Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:10:07 (36310): wrapper (7.7.26015): starting
16:10:07 (36310): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 16:10:07] Arguments: --nthreads 3
[2025-11-27 16:10:07] Threads: 3
[2025-11-27 16:10:07] Checking for CVMFS
[2025-11-27 16:10:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 16:10:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 16:10:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 16:10:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 16:10:07] 2.9.2.0 3252557 451 69688 153370 3 9 36033472 36864001 0 130560 0 2916972 99.999 21179 13009 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 16:10:07] CVMFS is ok
[2025-11-27 16:10:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 16:10:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 16:10:07] Further information can be found at the LHC@home message board.
[2025-11-27 16:10:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 16:10:07] Checking for apptainer binary...
[2025-11-27 16:10:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 16:10:07] Running /usr/bin/apptainer --version
[2025-11-27 16:10:07] apptainer version 1.4.1-1.1
[2025-11-27 16:10:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 16:10:07] thA335
[2025-11-27 16:10:07] apptainer works
[2025-11-27 16:10:07] Set ATHENA_PROC_NUMBER=3
[2025-11-27 16:10:07] Set ATHENA_CORE_NUMBER=3
[2025-11-27 16:10:07] Starting ATLAS job with PandaID=6898377013
[2025-11-27 16:10:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:14:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:14:21] 2025-11-27 15:13:33,322 | INFO     | sufficient remaining disk space (826375405568 B)
[2025-11-27 16:14:21] 2025-11-27 15:13:33,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:14:21] 2025-11-27 15:13:33,322 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:14:21] 2025-11-27 15:13:33,322 | INFO     | update_server=False
[2025-11-27 16:14:21] 2025-11-27 15:13:33,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:14:21] 2025-11-27 15:13:33,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:14:21] 2025-11-27 15:13:33,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:14:21] 2025-11-27 15:13:33,323 | INFO     | aborting loop
[2025-11-27 16:14:21] 2025-11-27 15:13:33,795 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:14:21] 2025-11-27 15:13:33,951 | INFO     | all job control threads have been joined
[2025-11-27 16:14:21] 2025-11-27 15:13:34,046 | INFO     | all data control threads have been joined
[2025-11-27 16:14:21] 2025-11-27 15:13:34,328 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:34,329 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:34,330 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:34,514 | INFO     | all payload control threads have been joined
[2025-11-27 16:14:21] 2025-11-27 15:13:34,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:34,894 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:34,957 | INFO     | [job] control thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,052 | INFO     | [data] control thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,359 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,447 | INFO     | [job] validate thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,520 | INFO     | [payload] control thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,533 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,594 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,738 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,802 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:35,873 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:13:36,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:14:21] 2025-11-27 15:13:40,097 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:14:21] 2025-11-27 15:14:03,094 | INFO     | PID=40040 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 16:14:21] 2025-11-27 15:14:03,094 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:14:21] 2025-11-27 15:14:03,094 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:14:21] 2025-11-27 15:14:03,094 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:14:21] 2025-11-27 15:14:14,281 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:14:21] 2025-11-27 15:14:15,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140519048173376)>', '<ExcThread(monitor, started 140517975258880)>']
[2025-11-27 16:14:21] 2025-11-27 15:14:16,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:14:21] 2025-11-27 15:14:16,163 | INFO     | [monitor] control thread has ended
[2025-11-27 16:14:21] 2025-11-27 15:14:20,992 | INFO     | all workflow threads have been joined
[2025-11-27 16:14:21] 2025-11-27 15:14:20,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:14:21] 2025-11-27 15:14:20,993 | INFO     | traces error code: 0
[2025-11-27 16:14:21] 2025-11-27 15:14:20,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:14:21] 2025-11-27 15:14:21,042 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:14:21] 2025-11-27 15:14:21,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:14:21] 2025-11-27 15:14:21,049 [wrapper] pilotpid: 40040
[2025-11-27 16:14:21] 2025-11-27 15:14:21,052 [wrapper] Pilot exit status: 0
[2025-11-27 16:14:21] 2025-11-27 15:14:21,059 [wrapper] pandaids: 6898377013
[2025-11-27 16:14:21] 2025-11-27 15:14:21,076 [wrapper] cleanup supervisor_pilot   40046 40041
[2025-11-27 16:14:21] 2025-11-27 15:14:21,078 [wrapper] Test setup, not cleaning
[2025-11-27 16:14:21] 2025-11-27 15:14:21,081 [wrapper] apfmon messages muted
[2025-11-27 16:14:21] 2025-11-27 15:14:21,083 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:14:21] 2025-11-27 15:14:21,086 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:14:21]  *** Error codes and diagnostics ***
[2025-11-27 16:14:21]     "exeErrorCode": 65,
[2025-11-27 16:14:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:14:21]     "pilotErrorCode": 1305,
[2025-11-27 16:14:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:14:21]  *** Listing of results directory ***
[2025-11-27 16:14:21] total 406384
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:04 pilot3.tar.gz
[2025-11-27 16:14:21] -rwx------ 1 boinc boinc     36292 Nov 26 17:09 runpilot2-wrapper.sh
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:09 queuedata.json
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc       100 Nov 27 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:14:21] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 16:10 run_atlas
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc       105 Nov 27 16:10 job.xml
[2025-11-27 16:14:21] -rw-r--r-- 2 boinc boinc 411952500 Nov 27 16:10 EVNT.47483658._003199.pool.root.1
[2025-11-27 16:14:21] -rw-r--r-- 2 boinc boinc    590095 Nov 27 16:10 input.tar.gz
[2025-11-27 16:14:21] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:10 start_atlas.sh
[2025-11-27 16:14:21] drwxrwx--x 2 boinc boinc      4096 Nov 27 16:10 shared
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:10 boinc_setup_complete
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc      6196 Nov 27 16:10 init_data.xml
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc         0 Nov 27 16:10 boinc_lockfile
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc      2786 Nov 27 16:10 pandaJob.out
[2025-11-27 16:14:21] -rw------- 1 boinc boinc    991580 Nov 27 16:10 agis_schedconf.cvmfs.json
[2025-11-27 16:14:21] -rw------- 1 boinc boinc   1516240 Nov 27 16:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:14:21] drwx------ 5 boinc boinc      4096 Nov 27 16:10 pilot3
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc       523 Nov 27 16:11 boinc_task_state.xml
[2025-11-27 16:14:21] -rw------- 1 boinc boinc       955 Nov 27 16:11 memory_monitor_summary.json
[2025-11-27 16:14:21] -rw------- 1 boinc boinc     54671 Nov 27 16:11 log.47556173._001552.job.log.tgz.1
[2025-11-27 16:14:21] -rw------- 1 boinc boinc        95 Nov 27 16:13 pilot_heartbeat.json
[2025-11-27 16:14:21] -rw------- 1 boinc boinc      8379 Nov 27 16:13 heartbeat.json
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc        23 Nov 27 16:14 wrapper_checkpoint.txt
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc      8192 Nov 27 16:14 boinc_mmap_file
[2025-11-27 16:14:21] -rw------- 1 boinc boinc      4750 Nov 27 16:14 pilotlog.txt
[2025-11-27 16:14:21] -rw------- 1 boinc boinc     93601 Nov 27 16:14 log.47556173._001552.job.log.1
[2025-11-27 16:14:21] -rw------- 1 boinc boinc       186 Nov 27 16:14 output.list
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc       620 Nov 27 16:14 runtime_log
[2025-11-27 16:14:21] -rw------- 1 boinc boinc    163840 Nov 27 16:14 result.tar.gz
[2025-11-27 16:14:21] -rw------- 1 boinc boinc       648 Nov 27 16:14 x41KDm2FXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU7MKDmi62nYn.diag
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc      8744 Nov 27 16:14 runtime_log.err
[2025-11-27 16:14:21] -rw-r--r-- 1 boinc boinc      8118 Nov 27 16:14 stderr.txt
[2025-11-27 16:14:21] No HITS result produced
[2025-11-27 16:14:21]  *** Contents of shared directory: ***
[2025-11-27 16:14:21] total 403060
[2025-11-27 16:14:21] -rw-r--r-- 2 boinc boinc 411952500 Nov 27 16:10 ATLAS.root_0
[2025-11-27 16:14:21] -rw-r--r-- 2 boinc boinc    590095 Nov 27 16:10 input.tar.gz
[2025-11-27 16:14:21] -rw-r--r-- 2 boinc boinc     15847 Nov 27 16:10 start_atlas.sh
[2025-11-27 16:14:21] -rw------- 1 boinc boinc    163840 Nov 27 16:14 result.tar.gz
16:14:23 (36310): run_atlas exited; CPU time 31.169718
16:14:23 (36310): called boinc_finish(0)

</stderr_txt>
]]>

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