Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:23 (4167648): wrapper (7.7.26015): starting
15:56:23 (4167648): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 15:56:23] Arguments: --nthreads 3
[2025-11-27 15:56:23] Threads: 3
[2025-11-27 15:56:23] Checking for CVMFS
[2025-11-27 15:56:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 15:56:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 15:56:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 15:56:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 15:56:24] 2.9.2.0 3252557 437 70100 153368 0 129 36025439 36864001 0 130560 0 2729173 99.999 18592 11782 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 15:56:24] CVMFS is ok
[2025-11-27 15:56:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 15:56:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 15:56:24] Further information can be found at the LHC@home message board.
[2025-11-27 15:56:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 15:56:24] Checking for apptainer binary...
[2025-11-27 15:56:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 15:56:24] Running /usr/bin/apptainer --version
[2025-11-27 15:56:24] apptainer version 1.4.1-1.1
[2025-11-27 15:56:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 15:56:24] thA335
[2025-11-27 15:56:24] apptainer works
[2025-11-27 15:56:24] Set ATHENA_PROC_NUMBER=3
[2025-11-27 15:56:24] Set ATHENA_CORE_NUMBER=3
[2025-11-27 15:56:24] Starting ATLAS job with PandaID=6898377108
[2025-11-27 15:56:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:00:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:00:40] NAME="CentOS Linux"
[2025-11-27 16:00:40] VERSION="7 (Core)"
[2025-11-27 16:00:40] ID="centos"
[2025-11-27 16:00:40] ID_LIKE="rhel fedora"
[2025-11-27 16:00:40] VERSION_ID="7"
[2025-11-27 16:00:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:00:40] ANSI_COLOR="0;31"
[2025-11-27 16:00:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:00:40] HOME_URL="https://www.centos.org/"
[2025-11-27 16:00:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:00:40] 
[2025-11-27 16:00:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:00:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:00:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:00:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:00:40] 
[2025-11-27 16:00:40] 2025-11-27 14:59:47,908 | INFO     | ***************************************
[2025-11-27 16:00:40] 2025-11-27 14:59:48,411 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | INFO     | sufficient remaining disk space (825574293504 B)
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | INFO     | update_server=False
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | INFO     | aborting loop
[2025-11-27 16:00:40] 2025-11-27 14:59:48,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:00:40] 2025-11-27 14:59:48,554 | INFO     | all job control threads have been joined
[2025-11-27 16:00:40] 2025-11-27 14:59:48,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:00:40] 2025-11-27 14:59:49,423 | INFO     | all data control threads have been joined
[2025-11-27 16:00:40] 2025-11-27 14:59:49,431 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:49,432 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:49,432 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:49,541 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:49,560 | INFO     | [job] control thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:49,718 | INFO     | all payload control threads have been joined
[2025-11-27 16:00:40] 2025-11-27 14:59:49,748 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,341 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,385 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,429 | INFO     | [data] control thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,588 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,685 | INFO     | [job] validate thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,724 | INFO     | [payload] control thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,765 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,837 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:50,873 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:00:40] 2025-11-27 14:59:51,390 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:00:40] 2025-11-27 14:59:55,398 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:00:40] 2025-11-27 15:00:18,855 | INFO     | PID=4171377 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:00:40] 2025-11-27 15:00:18,855 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:00:40] 2025-11-27 15:00:18,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:00:40] 2025-11-27 15:00:18,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:00:40] 2025-11-27 15:00:33,864 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:00:40] 2025-11-27 15:00:35,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370046035776)>', '<ExcThread(monitor, started 140369194907392)>']
[2025-11-27 16:00:40] 2025-11-27 15:00:35,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:00:40] 2025-11-27 15:00:35,946 | INFO     | [monitor] control thread has ended
[2025-11-27 16:00:40] 2025-11-27 15:00:40,204 | INFO     | all workflow threads have been joined
[2025-11-27 16:00:40] 2025-11-27 15:00:40,205 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:00:40] 2025-11-27 15:00:40,205 | INFO     | traces error code: 0
[2025-11-27 16:00:40] 2025-11-27 15:00:40,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:00:40] 2025-11-27 15:00:40,251 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:00:40] 2025-11-27 15:00:40,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:00:40] 2025-11-27 15:00:40,257 [wrapper] pilotpid: 4171377
[2025-11-27 16:00:40] 2025-11-27 15:00:40,260 [wrapper] Pilot exit status: 0
[2025-11-27 16:00:40] 2025-11-27 15:00:40,267 [wrapper] pandaids: 6898377108
[2025-11-27 16:00:40] 2025-11-27 15:00:40,284 [wrapper] cleanup supervisor_pilot 4171383 4171378
[2025-11-27 16:00:40] 2025-11-27 15:00:40,287 [wrapper] Test setup, not cleaning
[2025-11-27 16:00:40] 2025-11-27 15:00:40,289 [wrapper] apfmon messages muted
[2025-11-27 16:00:40] 2025-11-27 15:00:40,292 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:00:40] 2025-11-27 15:00:40,294 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:00:40]  *** Error codes and diagnostics ***
[2025-11-27 16:00:40]     "exeErrorCode": 65,
[2025-11-27 16:00:40]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:00:40]     "pilotErrorCode": 1305,
[2025-11-27 16:00:40]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 16:00:40]  *** Listing of results directory ***
[2025-11-27 16:00:40] total 402944
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc    576529 Nov 26 17:12 pilot3.tar.gz
[2025-11-27 16:00:40] -rwx------ 1 boinc boinc     36292 Nov 26 17:14 runpilot2-wrapper.sh
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc      5112 Nov 26 17:14 queuedata.json
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc       100 Nov 27 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:00:40] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 15:56 run_atlas
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc       105 Nov 27 15:56 job.xml
[2025-11-27 16:00:40] -rw-r--r-- 2 boinc boinc 408423072 Nov 27 15:56 EVNT.47483658._002570.pool.root.1
[2025-11-27 16:00:40] drwxrwx--x 2 boinc boinc      4096 Nov 27 15:56 shared
[2025-11-27 16:00:40] -rw-r--r-- 2 boinc boinc    590101 Nov 27 15:56 input.tar.gz
[2025-11-27 16:00:40] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:56 start_atlas.sh
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:56 boinc_setup_complete
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc      6196 Nov 27 15:56 init_data.xml
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:56 boinc_lockfile
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc      2785 Nov 27 15:56 pandaJob.out
[2025-11-27 16:00:40] -rw------- 1 boinc boinc    991580 Nov 27 15:56 agis_schedconf.cvmfs.json
[2025-11-27 16:00:40] -rw------- 1 boinc boinc   1516240 Nov 27 15:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:00:40] drwx------ 5 boinc boinc      4096 Nov 27 15:56 pilot3
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc       523 Nov 27 15:57 boinc_task_state.xml
[2025-11-27 16:00:40] -rw------- 1 boinc boinc       981 Nov 27 15:57 memory_monitor_summary.json
[2025-11-27 16:00:40] -rw------- 1 boinc boinc     56020 Nov 27 15:57 log.47556161._005523.job.log.tgz.1
[2025-11-27 16:00:40] -rw------- 1 boinc boinc        95 Nov 27 15:59 pilot_heartbeat.json
[2025-11-27 16:00:40] -rw------- 1 boinc boinc      8386 Nov 27 15:59 heartbeat.json
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc      8192 Nov 27 16:00 boinc_mmap_file
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc        22 Nov 27 16:00 wrapper_checkpoint.txt
[2025-11-27 16:00:40] -rw------- 1 boinc boinc      4752 Nov 27 16:00 pilotlog.txt
[2025-11-27 16:00:40] -rw------- 1 boinc boinc     92202 Nov 27 16:00 log.47556161._005523.job.log.1
[2025-11-27 16:00:40] -rw------- 1 boinc boinc       186 Nov 27 16:00 output.list
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc       620 Nov 27 16:00 runtime_log
[2025-11-27 16:00:40] -rw------- 1 boinc boinc    163840 Nov 27 16:00 result.tar.gz
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc      8744 Nov 27 16:00 runtime_log.err
[2025-11-27 16:00:40] -rw------- 1 boinc boinc       649 Nov 27 16:00 LAiKDmyKXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm67MKDmbirmMm.diag
[2025-11-27 16:00:40] -rw-r--r-- 1 boinc boinc      9083 Nov 27 16:00 stderr.txt
[2025-11-27 16:00:40] No HITS result produced
[2025-11-27 16:00:40]  *** Contents of shared directory: ***
[2025-11-27 16:00:40] total 399612
[2025-11-27 16:00:40] -rw-r--r-- 2 boinc boinc 408423072 Nov 27 15:56 ATLAS.root_0
[2025-11-27 16:00:40] -rw-r--r-- 2 boinc boinc    590101 Nov 27 15:56 input.tar.gz
[2025-11-27 16:00:40] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:56 start_atlas.sh
[2025-11-27 16:00:40] -rw------- 1 boinc boinc    163840 Nov 27 16:00 result.tar.gz
16:00:41 (4167648): run_atlas exited; CPU time 30.448116
16:00:41 (4167648): called boinc_finish(0)

</stderr_txt>
]]>

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