Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:18:18 (3487172): wrapper (7.7.26015): starting
09:18:18 (3487172): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:18:18] Arguments: --nthreads 8
[2025-11-27 09:18:18] Threads: 8
[2025-11-27 09:18:18] Checking for CVMFS
[2025-11-27 09:18:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:18:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:18:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:18:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:18:20] 2.13.3.0 14106 31551 257216 153368 2 247 27752073 40960000 65524 16776704 0 398827525 99.750 262284320 47229 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 09:18:20] CVMFS is ok
[2025-11-27 09:18:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:18:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:18:20] Further information can be found at the LHC@home message board.
[2025-11-27 09:18:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:18:20] Checking for apptainer binary...
[2025-11-27 09:18:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:18:20] Running /usr/bin/apptainer --version
[2025-11-27 09:18:20] apptainer version 1.4.4-1.el9
[2025-11-27 09:18:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:18:21] c8-7-5.aglt2.org
[2025-11-27 09:18:21] apptainer works
[2025-11-27 09:18:21] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:18:21] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:18:21] Starting ATLAS job with PandaID=6898377081
[2025-11-27 09:18:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:06:52]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:06:52] 2025-11-27 23:05:38,089 | INFO     | 31560s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 18:06:52] 2025-11-27 23:05:40,058 | INFO     | monitor loop #1760: job 0:6898377081 is in state 'finished'
[2025-11-27 18:06:52] 2025-11-27 23:05:40,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:06:52] 2025-11-27 23:05:40,096 | INFO     | time since job start (31553s) is within the limit (172800.0s)
[2025-11-27 18:06:52] 2025-11-27 23:05:42,118 | INFO     | time since job start (31555s) is within the limit (172800.0s)
[2025-11-27 18:06:52] 2025-11-27 23:05:42,565 | INFO     | monitor loop #1761: job 0:6898377081 is in state 'finished'
[2025-11-27 18:06:52] 2025-11-27 23:05:42,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:06:52] 2025-11-27 23:05:44,126 | INFO     | time since job start (31557s) is within the limit (172800.0s)
[2025-11-27 18:06:52] 2025-11-27 23:05:45,070 | INFO     | monitor loop #1762: job 0:6898377081 is in state 'finished'
[2025-11-27 18:06:52] 2025-11-27 23:05:45,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:06:52] 2025-11-27 23:05:46,132 | INFO     | time since job start (31559s) is within the limit (172800.0s)
[2025-11-27 18:06:52] 2025-11-27 23:05:47,575 | INFO     | monitor loop #1763: job 0:6898377081 is in state 'finished'
[2025-11-27 18:06:52] 2025-11-27 23:05:47,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:06:52] 2025-11-27 23:05:48,142 | INFO     | time since job start (31561s) is within the limit (172800.0s)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,078 | INFO     | monitor loop #1764: job 0:6898377081 is in state 'finished'
[2025-11-27 18:06:52] 2025-11-27 23:05:50,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,150 | INFO     | time since job start (31563s) is within the limit (172800.0s)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,743 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:06:52] 2025-11-27 23:05:50,756 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9940624999995
[2025-11-27 18:06:52] 2025-11-27 23:05:50,806 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898377081/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,819 | INFO     | extracted standard info from prmon json
[2025-11-27 18:06:52] 2025-11-27 23:05:50,819 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:06:52] 2025-11-27 23:05:50,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:06:52] 2025-11-27 23:05:50,836 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:06:52] 2025-11-27 23:05:50,837 | INFO     | sum of square deviations: 41863560041.968925
[2025-11-27 18:06:52] 2025-11-27 23:05:50,853 | INFO     | sum of deviations: 96080174313.89047
[2025-11-27 18:06:52] 2025-11-27 23:05:50,853 | INFO     | mean x: 1764269013.0077972
[2025-11-27 18:06:52] 2025-11-27 23:05:50,853 | INFO     | mean y: 2736733.0272904485
[2025-11-27 18:06:52] 2025-11-27 23:05:50,853 | INFO     | intersect: -4046399894.064308
[2025-11-27 18:06:52] 2025-11-27 23:05:50,854 | INFO     | chi2: 28.219865553738362
[2025-11-27 18:06:52] 2025-11-27 23:05:50,854 | INFO     | sum of square deviations: 40651546156.8405
[2025-11-27 18:06:52] 2025-11-27 23:05:50,864 | INFO     | sum of deviations: 260369434380.61047
[2025-11-27 18:06:52] 2025-11-27 23:05:50,864 | INFO     | mean x: 1764268860.5177166
[2025-11-27 18:06:52] 2025-11-27 23:05:50,865 | INFO     | mean y: 2757396.0433070865
[2025-11-27 18:06:52] 2025-11-27 23:05:50,865 | INFO     | intersect: -11297223262.405144
[2025-11-27 18:06:52] 2025-11-27 23:05:50,865 | INFO     | chi2: 24.573456129076316
[2025-11-27 18:06:52] 2025-11-27 23:05:50,865 | INFO     | current chi2=24.573456129076316 (change=12.921427345988883 %)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,865 | INFO     | right removable region: 507
[2025-11-27 18:06:52] 2025-11-27 23:05:50,865 | INFO     | sum of square deviations: 40651230786.84049
[2025-11-27 18:06:52] 2025-11-27 23:05:50,889 | INFO     | sum of deviations: -104852624545.11673
[2025-11-27 18:06:52] 2025-11-27 23:05:50,889 | INFO     | mean x: 1764269165.5177166
[2025-11-27 18:06:52] 2025-11-27 23:05:50,889 | INFO     | mean y: 2762003.624015748
[2025-11-27 18:06:52] 2025-11-27 23:05:50,889 | INFO     | intersect: 4553380738.3571205
[2025-11-27 18:06:52] 2025-11-27 23:05:50,889 | INFO     | chi2: 23.751646276579844
[2025-11-27 18:06:52] 2025-11-27 23:05:50,889 | INFO     | current chi2=23.751646276579844 (change=15.83359519785735 %)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,889 | INFO     | left removable region: 10
[2025-11-27 18:06:52] 2025-11-27 23:05:50,890 | INFO     | sum of square deviations: 38067329213.19527
[2025-11-27 18:06:52] 2025-11-27 23:05:50,902 | INFO     | sum of deviations: -80732294140.1409
[2025-11-27 18:06:52] 2025-11-27 23:05:50,902 | INFO     | mean x: 1764269135.0402415
[2025-11-27 18:06:52] 2025-11-27 23:05:50,902 | INFO     | mean y: 2811049.5070422534
[2025-11-27 18:06:52] 2025-11-27 23:05:50,902 | INFO     | intersect: 3744431428.3559227
[2025-11-27 18:06:52] 2025-11-27 23:05:50,902 | INFO     | chi2: 15.836201432967124
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | current memory leak: -2.12 B/s (using 497 data points, chi2=15.84)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | could have reported an average CPU frequency of 3796 MHz (21 samples)
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | ..............................
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | . Timing measurements:
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | . get job = 0 s
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | . initial setup = 9 s
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | . payload setup = 59 s
[2025-11-27 18:06:52] 2025-11-27 23:05:50,903 | INFO     | . stage-in = 0 s
[2025-11-27 18:06:52] 2025-11-27 23:05:50,904 | INFO     | . payload execution = 31348 s
[2025-11-27 18:06:52] 2025-11-27 23:05:50,904 | INFO     | . stage-out = 14 s
[2025-11-27 18:06:52] 2025-11-27 23:05:50,904 | INFO     | . log creation = 4 s
[2025-11-27 18:06:52] 2025-11-27 23:05:50,904 | INFO     | ..............................
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | 
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | job summary report
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | --------------------------------------------------
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | PanDA job id: 6898377081
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | task id: 47556161
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | errors: (none)
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | pilot state: finished 
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | transexitcode: 0
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | exeerrorcode: 0
[2025-11-27 18:06:52] 2025-11-27 23:05:51,117 | INFO     | exeerrordiag: 
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | exitcode: 0
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | exitmsg: OK
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | cpuconsumptiontime: 134770 s
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | nevents: 1000
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | neventsw: 0
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | pid: 3519390
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | pgrp: 3519390
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | corecount: 8
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | event service: False
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 45: 2284689, 56: 2284845, 31410: 2323770, 31425: 2332792, 31426: 2332848, 31475: 2333094}
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | --------------------------------------------------
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | 
[2025-11-27 18:06:52] 2025-11-27 23:05:51,118 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,220 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,224 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | job 6898377081 has completed (purged errors)
[2025-11-27 18:06:52] 2025-11-27 23:05:51,225 | INFO     | overall cleanup function is called
[2025-11-27 18:06:52] 2025-11-27 23:05:52,257 | INFO     | --- collectZombieJob: --- 10, [3519390]
[2025-11-27 18:06:52] 2025-11-27 23:05:52,257 | INFO     | zombie collector waiting for pid 3519390
[2025-11-27 18:06:52] 2025-11-27 23:05:52,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:06:52] 2025-11-27 23:05:52,257 | INFO     | collected zombie processes
[2025-11-27 18:06:52] 2025-11-27 23:05:52,257 | INFO     | will attempt to kill all subprocesses of pid=3519390
[2025-11-27 18:06:52] 2025-11-27 23:05:54,790 | INFO     | process IDs to be killed: [3519390] (in reverse order)
[2025-11-27 18:06:52] 2025-11-27 23:05:55,494 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:06:52] 2025-11-27 23:05:55,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:06:52] 2025-11-27 23:05:55,548 | INFO     | did not find any defunct processes belonging to 3519390
[2025-11-27 18:06:52] 2025-11-27 23:05:55,615 | INFO     | did not find any defunct processes belonging to 3519390
[2025-11-27 18:06:52] 2025-11-27 23:05:55,625 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:06:52] 2025-11-27 23:05:55,625 | INFO     | ready for new job
[2025-11-27 18:06:52] 2025-11-27 23:05:55,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:06:52] 2025-11-27 23:05:55,634 | INFO     | ***************************************
[2025-11-27 18:06:52] 2025-11-27 23:05:55,634 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:06:52] 2025-11-27 23:05:55,634 | INFO     | ***************************************
[2025-11-27 18:06:52] 2025-11-27 23:05:55,634 | INFO     | 
[2025-11-27 18:06:52] 2025-11-27 23:05:55,647 | INFO     | architecture information:
[2025-11-27 18:06:52] 2025-11-27 23:05:55,647 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:06:52] 2025-11-27 23:05:55,742 | INFO     | cat /etc/os-release:
[2025-11-27 18:06:52] NAME="CentOS Linux"
[2025-11-27 18:06:52] VERSION="7 (Core)"
[2025-11-27 18:06:52] ID="centos"
[2025-11-27 18:06:52] ID_LIKE="rhel fedora"
[2025-11-27 18:06:52] VERSION_ID="7"
[2025-11-27 18:06:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:06:52] ANSI_COLOR="0;31"
[2025-11-27 18:06:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:06:52] HOME_URL="https://www.centos.org/"
[2025-11-27 18:06:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:06:52] 
[2025-11-27 18:06:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:06:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:06:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:06:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:06:52] 
[2025-11-27 18:06:52] 2025-11-27 23:05:55,742 | INFO     | ***************************************
[2025-11-27 18:06:52] 2025-11-27 23:05:56,246 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 18:06:52] 2025-11-27 23:05:56,285 | INFO     | sufficient remaining disk space (160226607104 B)
[2025-11-27 18:06:52] 2025-11-27 23:05:56,285 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:06:52] 2025-11-27 23:05:56,285 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:06:52] 2025-11-27 23:05:56,286 | INFO     | update_server=False
[2025-11-27 18:06:52] 2025-11-27 23:05:56,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:06:52] 2025-11-27 23:05:56,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:06:52] 2025-11-27 23:05:56,286 | INFO     | aborting loop
[2025-11-27 18:06:52] 2025-11-27 23:05:56,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:06:52] 2025-11-27 23:05:56,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:06:52] 2025-11-27 23:05:56,711 | INFO     | all data control threads have been joined
[2025-11-27 18:06:52] 2025-11-27 23:05:56,802 | INFO     | all job control threads have been joined
[2025-11-27 18:06:52] 2025-11-27 23:05:57,292 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,292 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,298 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,311 | INFO     | all payload control threads have been joined
[2025-11-27 18:06:52] 2025-11-27 23:05:57,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,717 | INFO     | [data] control thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,762 | INFO     | [job] validate thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,820 | INFO     | [job] control thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,831 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,831 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:57,897 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:58,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:06:52] 2025-11-27 23:05:58,338 | INFO     | [payload] control thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:58,526 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:58,569 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:58,620 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:05:58,650 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:06:02,324 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:06:52] 2025-11-27 23:06:25,412 | INFO     | PID=3496207 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:06:52] 2025-11-27 23:06:25,412 | INFO     | .. there are 98 such processes running
[2025-11-27 18:06:52] 2025-11-27 23:06:25,413 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:06:52] 2025-11-27 23:06:25,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:06:52] 2025-11-27 23:06:25,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:06:52] 2025-11-27 23:06:43,082 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:06:52] 2025-11-27 23:06:44,211 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799704000320)>', '<ExcThread(monitor, started 139799356757760)>']
[2025-11-27 18:06:52] 2025-11-27 23:06:44,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:06:52] 2025-11-27 23:06:44,544 | INFO     | [monitor] control thread has ended
[2025-11-27 18:06:52] 2025-11-27 23:06:49,237 | INFO     | all workflow threads have been joined
[2025-11-27 18:06:52] 2025-11-27 23:06:49,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:06:52] 2025-11-27 23:06:49,239 | INFO     | traces error code: 0
[2025-11-27 18:06:52] 2025-11-27 23:06:49,239 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:06:52] 2025-11-27 23:06:50,386 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:06:52] 2025-11-27 23:06:50,405 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:06:52] 2025-11-27 23:06:50,435 [wrapper] pilotpid: 3496207
[2025-11-27 18:06:52] 2025-11-27 23:06:50,498 [wrapper] Pilot exit status: 0
[2025-11-27 18:06:52] 2025-11-27 23:06:50,764 [wrapper] pandaids: 6898377081
[2025-11-27 18:06:52] 2025-11-27 23:06:51,386 [wrapper] cleanup supervisor_pilot 3422897 3496208
[2025-11-27 18:06:52] 2025-11-27 23:06:51,479 [wrapper] Test setup, not cleaning
[2025-11-27 18:06:52] 2025-11-27 23:06:51,533 [wrapper] apfmon messages muted
[2025-11-27 18:06:52] 2025-11-27 23:06:51,596 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:06:52] 2025-11-27 23:06:51,648 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:06:52]  *** Error codes and diagnostics ***
[2025-11-27 18:06:52]     "exeErrorCode": 0,
[2025-11-27 18:06:52]     "exeErrorDiag": "",
[2025-11-27 18:06:52]     "pilotErrorCode": 0,
[2025-11-27 18:06:52]     "pilotErrorDiag": "",
[2025-11-27 18:06:52]  *** Listing of results directory ***
[2025-11-27 18:06:52] total 1309284
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:14 queuedata.json
[2025-11-27 18:06:52] -rwx------. 1 boincer umatlas     36292 Nov 26 11:15 runpilot2-wrapper.sh
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas       100 Nov 27 09:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:06:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 09:18 run_atlas
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas       105 Nov 27 09:18 job.xml
[2025-11-27 18:06:52] -rw-r--r--. 2 boincer umatlas 409967235 Nov 27 09:18 EVNT.47483658._002568.pool.root.1
[2025-11-27 18:06:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 09:18 start_atlas.sh
[2025-11-27 18:06:52] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 09:18 shared
[2025-11-27 18:06:52] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 09:18 input.tar.gz
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas         0 Nov 27 09:18 boinc_lockfile
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 09:18 pandaJob.out
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas        57 Nov 27 09:18 setup.sh.local
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas    991580 Nov 27 09:19 agis_schedconf.cvmfs.json
[2025-11-27 18:06:52] drwx------. 5 boincer umatlas      4096 Nov 27 09:19 pilot3
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:36 boinc_task_state.xml
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 18:01 init_data.xml
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas 915659463 Nov 27 18:03 HITS.47556161._005503.pool.root.1
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas      1052 Nov 27 18:04 memory_monitor_summary.json
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas   1765041 Nov 27 18:04 log.47556161._005503.job.log.tgz.1
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas        95 Nov 27 18:05 pilot_heartbeat.json
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas      8578 Nov 27 18:05 heartbeat.json
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:06 wrapper_checkpoint.txt
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas      4825 Nov 27 18:06 pilotlog.txt
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas   3815587 Nov 27 18:06 log.47556161._005503.job.log.1
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas       353 Nov 27 18:06 output.list
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:06 runtime_log
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas   5601280 Nov 27 18:06 result.tar.gz
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 18:06 runtime_log.err
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas       658 Nov 27 18:06 hGmKDmzLXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmI8MKDmW7EBgn.diag
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:06 boinc_mmap_file
[2025-11-27 18:06:52] -rw-r--r--. 1 boincer umatlas     21837 Nov 27 18:06 stderr.txt
[2025-11-27 18:06:52] HITS file was successfully produced:
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas 915659463 Nov 27 18:03 shared/HITS.pool.root.1
[2025-11-27 18:06:52]  *** Contents of shared directory: ***
[2025-11-27 18:06:52] total 1300632
[2025-11-27 18:06:52] -rw-r--r--. 2 boincer umatlas 409967235 Nov 27 09:18 ATLAS.root_0
[2025-11-27 18:06:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 09:18 start_atlas.sh
[2025-11-27 18:06:52] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 09:18 input.tar.gz
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas 915659463 Nov 27 18:03 HITS.pool.root.1
[2025-11-27 18:06:52] -rw-------. 1 boincer umatlas   5601280 Nov 27 18:06 result.tar.gz
18:06:53 (3487172): run_atlas exited; CPU time 135447.658382
18:06:53 (3487172): called boinc_finish(0)

</stderr_txt>
]]>

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