Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:51:29 (3236528): wrapper (7.7.26015): starting
08:51:29 (3236528): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 08:51:29] Arguments: --nthreads 9
[2025-11-27 08:51:29] Threads: 9
[2025-11-27 08:51:29] Checking for CVMFS
[2025-11-27 08:51:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:51:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:51:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:51:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:51:29] 2.13.3.0 14106 31524 273320 153366 1 483 27563463 40960000 60344 16776704 0 398361784 99.750 262226227 47227 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 08:51:29] CVMFS is ok
[2025-11-27 08:51:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:51:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:51:29] Further information can be found at the LHC@home message board.
[2025-11-27 08:51:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:51:29] Checking for apptainer binary...
[2025-11-27 08:51:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:51:29] Running /usr/bin/apptainer --version
[2025-11-27 08:51:29] apptainer version 1.4.4-1.el9
[2025-11-27 08:51:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:51:29] c8-7-5.aglt2.org
[2025-11-27 08:51:29] apptainer works
[2025-11-27 08:51:29] Set ATHENA_PROC_NUMBER=9
[2025-11-27 08:51:29] Set ATHENA_CORE_NUMBER=9
[2025-11-27 08:51:29] Starting ATLAS job with PandaID=6898377758
[2025-11-27 08:51:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:21:42]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:21:42] 2025-11-27 21:20:21,472 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:21:42] 2025-11-27 21:20:22,933 | INFO     | time since job start (26915s) is within the limit (172800.0s)
[2025-11-27 16:21:42] 2025-11-27 21:20:23,998 | INFO     | monitor loop #1430: job 0:6898377758 is in state 'finished'
[2025-11-27 16:21:42] 2025-11-27 21:20:23,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:21:42] 2025-11-27 21:20:24,955 | INFO     | time since job start (26917s) is within the limit (172800.0s)
[2025-11-27 16:21:42] 2025-11-27 21:20:26,503 | INFO     | monitor loop #1431: job 0:6898377758 is in state 'finished'
[2025-11-27 16:21:42] 2025-11-27 21:20:26,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:21:42] 2025-11-27 21:20:26,962 | INFO     | time since job start (26919s) is within the limit (172800.0s)
[2025-11-27 16:21:42] 2025-11-27 21:20:28,979 | INFO     | time since job start (26921s) is within the limit (172800.0s)
[2025-11-27 16:21:42] 2025-11-27 21:20:29,022 | INFO     | monitor loop #1432: job 0:6898377758 is in state 'finished'
[2025-11-27 16:21:42] 2025-11-27 21:20:29,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:21:42] 2025-11-27 21:20:30,995 | INFO     | time since job start (26923s) is within the limit (172800.0s)
[2025-11-27 16:21:42] 2025-11-27 21:20:31,545 | INFO     | monitor loop #1433: job 0:6898377758 is in state 'finished'
[2025-11-27 16:21:42] 2025-11-27 21:20:31,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:21:42] 2025-11-27 21:20:33,003 | INFO     | time since job start (26926s) is within the limit (172800.0s)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,062 | INFO     | monitor loop #1434: job 0:6898377758 is in state 'finished'
[2025-11-27 16:21:42] 2025-11-27 21:20:34,062 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,498 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:21:42] 2025-11-27 21:20:34,503 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3793.8471171875003
[2025-11-27 16:21:42] 2025-11-27 21:20:34,517 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898377758/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,517 | INFO     | extracted standard info from prmon json
[2025-11-27 16:21:42] 2025-11-27 21:20:34,518 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:21:42] 2025-11-27 21:20:34,518 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:21:42] 2025-11-27 21:20:34,522 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:21:42] 2025-11-27 21:20:34,524 | INFO     | sum of square deviations: 26412991774.172657
[2025-11-27 16:21:42] 2025-11-27 21:20:34,526 | INFO     | sum of deviations: -494991103779.9727
[2025-11-27 16:21:42] 2025-11-27 21:20:34,526 | INFO     | mean x: 1764264930.6772728
[2025-11-27 16:21:42] 2025-11-27 21:20:34,527 | INFO     | mean y: 2895323.422727273
[2025-11-27 16:21:42] 2025-11-27 21:20:34,527 | INFO     | intersect: 33065997484.0107
[2025-11-27 16:21:42] 2025-11-27 21:20:34,527 | INFO     | chi2: 26.342599636711608
[2025-11-27 16:21:42] 2025-11-27 21:20:34,527 | INFO     | sum of square deviations: 25522863297.162994
[2025-11-27 16:21:42] 2025-11-27 21:20:34,556 | INFO     | sum of deviations: -342798547308.4557
[2025-11-27 16:21:42] 2025-11-27 21:20:34,556 | INFO     | mean x: 1764264778.1908045
[2025-11-27 16:21:42] 2025-11-27 21:20:34,556 | INFO     | mean y: 2921388.1862068963
[2025-11-27 16:21:42] 2025-11-27 21:20:34,556 | INFO     | intersect: 23698828700.376686
[2025-11-27 16:21:42] 2025-11-27 21:20:34,557 | INFO     | chi2: 22.24263446205391
[2025-11-27 16:21:42] 2025-11-27 21:20:34,557 | INFO     | current chi2=22.24263446205391 (change=15.56401126388414 %)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,557 | INFO     | right removable region: 434
[2025-11-27 16:21:42] 2025-11-27 21:20:34,557 | INFO     | sum of square deviations: 25522600633.917366
[2025-11-27 16:21:42] 2025-11-27 21:20:34,579 | INFO     | sum of deviations: -607199215229.6758
[2025-11-27 16:21:42] 2025-11-27 21:20:34,579 | INFO     | mean x: 1764265083.1862068
[2025-11-27 16:21:42] 2025-11-27 21:20:34,579 | INFO     | mean y: 2914469.6873563216
[2025-11-27 16:21:42] 2025-11-27 21:20:34,579 | INFO     | intersect: 41975924561.149956
[2025-11-27 16:21:42] 2025-11-27 21:20:34,579 | INFO     | chi2: 24.302981953814555
[2025-11-27 16:21:42] 2025-11-27 21:20:34,579 | INFO     | current chi2=24.302981953814555 (change=7.742659080824346 %)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,579 | INFO     | left removable region: 10
[2025-11-27 16:21:42] 2025-11-27 21:20:34,580 | INFO     | sum of square deviations: 23635077562.959877
[2025-11-27 16:21:42] 2025-11-27 21:20:34,601 | INFO     | sum of deviations: -442816309155.98334
[2025-11-27 16:21:42] 2025-11-27 21:20:34,601 | INFO     | mean x: 1764265052.7004716
[2025-11-27 16:21:42] 2025-11-27 21:20:34,601 | INFO     | mean y: 2950145.4174528304
[2025-11-27 16:21:42] 2025-11-27 21:20:34,601 | INFO     | intersect: 33057436086.011593
[2025-11-27 16:21:42] 2025-11-27 21:20:34,602 | INFO     | chi2: 19.259422025188258
[2025-11-27 16:21:42] 2025-11-27 21:20:34,602 | INFO     | current memory leak: -18.74 B/s (using 424 data points, chi2=19.26)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,602 | INFO     | could have reported an average CPU frequency of 3797 MHz (18 samples)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,602 | INFO     | ..............................
[2025-11-27 16:21:42] 2025-11-27 21:20:34,602 | INFO     | . Timing measurements:
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | . get job = 0 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | . initial setup = 2 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | . payload setup = 7 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | . stage-in = 0 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | . payload execution = 26842 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | . stage-out = 7 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | . log creation = 2 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,603 | INFO     | ..............................
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | 
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | job summary report
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | --------------------------------------------------
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | PanDA job id: 6898377758
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | task id: 47556161
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | errors: (none)
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | pilot state: finished 
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | transexitcode: 0
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | exeerrorcode: 0
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | exeerrordiag: 
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | exitcode: 0
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | exitmsg: OK
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | cpuconsumptiontime: 135709 s
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | nevents: 1000
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | neventsw: 0
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | pid: 3259353
[2025-11-27 16:21:42] 2025-11-27 21:20:34,914 | INFO     | pgrp: 3259353
[2025-11-27 16:21:42] 2025-11-27 21:20:34,915 | INFO     | corecount: 9
[2025-11-27 16:21:42] 2025-11-27 21:20:34,915 | INFO     | event service: False
[2025-11-27 16:21:42] 2025-11-27 21:20:34,915 | INFO     | sizes: {0: 2284144, 1: 2284343, 9: 2284605, 11: 2284633, 26850: 2321675, 26851: 2321674, 26860: 2330936, 26910: 2331126}
[2025-11-27 16:21:42] 2025-11-27 21:20:34,915 | INFO     | --------------------------------------------------
[2025-11-27 16:21:42] 2025-11-27 21:20:34,915 | INFO     | 
[2025-11-27 16:21:42] 2025-11-27 21:20:34,915 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | job 6898377758 has completed (purged errors)
[2025-11-27 16:21:42] 2025-11-27 21:20:35,011 | INFO     | overall cleanup function is called
[2025-11-27 16:21:42] 2025-11-27 21:20:36,046 | INFO     | --- collectZombieJob: --- 10, [3259353]
[2025-11-27 16:21:42] 2025-11-27 21:20:36,046 | INFO     | zombie collector waiting for pid 3259353
[2025-11-27 16:21:42] 2025-11-27 21:20:36,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:21:42] 2025-11-27 21:20:36,046 | INFO     | collected zombie processes
[2025-11-27 16:21:42] 2025-11-27 21:20:36,046 | INFO     | will attempt to kill all subprocesses of pid=3259353
[2025-11-27 16:21:42] 2025-11-27 21:20:38,216 | INFO     | process IDs to be killed: [3259353] (in reverse order)
[2025-11-27 16:21:42] 2025-11-27 21:20:38,663 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:21:42] 2025-11-27 21:20:38,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:21:42] 2025-11-27 21:20:38,782 | INFO     | did not find any defunct processes belonging to 3259353
[2025-11-27 16:21:42] 2025-11-27 21:20:38,861 | INFO     | did not find any defunct processes belonging to 3259353
[2025-11-27 16:21:42] 2025-11-27 21:20:38,895 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:21:42] 2025-11-27 21:20:38,895 | INFO     | ready for new job
[2025-11-27 16:21:42] 2025-11-27 21:20:38,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:21:42] 2025-11-27 21:20:38,912 | INFO     | ***************************************
[2025-11-27 16:21:42] 2025-11-27 21:20:38,914 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:21:42] 2025-11-27 21:20:38,914 | INFO     | ***************************************
[2025-11-27 16:21:42] 2025-11-27 21:20:38,914 | INFO     | 
[2025-11-27 16:21:42] 2025-11-27 21:20:38,926 | INFO     | architecture information:
[2025-11-27 16:21:42] 2025-11-27 21:20:38,941 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:21:42] 2025-11-27 21:20:39,020 | INFO     | cat /etc/os-release:
[2025-11-27 16:21:42] NAME="CentOS Linux"
[2025-11-27 16:21:42] VERSION="7 (Core)"
[2025-11-27 16:21:42] ID="centos"
[2025-11-27 16:21:42] ID_LIKE="rhel fedora"
[2025-11-27 16:21:42] VERSION_ID="7"
[2025-11-27 16:21:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:21:42] ANSI_COLOR="0;31"
[2025-11-27 16:21:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:21:42] HOME_URL="https://www.centos.org/"
[2025-11-27 16:21:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:21:42] 
[2025-11-27 16:21:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:21:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:21:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:21:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:21:42] 
[2025-11-27 16:21:42] 2025-11-27 21:20:39,020 | INFO     | ***************************************
[2025-11-27 16:21:42] 2025-11-27 21:20:39,524 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 16:21:42] 2025-11-27 21:20:39,658 | INFO     | sufficient remaining disk space (161239531520 B)
[2025-11-27 16:21:42] 2025-11-27 21:20:39,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:21:42] 2025-11-27 21:20:39,659 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:21:42] 2025-11-27 21:20:39,659 | INFO     | update_server=False
[2025-11-27 16:21:42] 2025-11-27 21:20:39,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:21:42] 2025-11-27 21:20:39,680 | INFO     | all data control threads have been joined
[2025-11-27 16:21:42] 2025-11-27 21:20:39,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:21:42] 2025-11-27 21:20:40,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:21:42] 2025-11-27 21:20:40,083 | INFO     | aborting loop
[2025-11-27 16:21:42] 2025-11-27 21:20:40,288 | INFO     | all payload control threads have been joined
[2025-11-27 16:21:42] 2025-11-27 21:20:40,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:21:42] 2025-11-27 21:20:40,665 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:40,685 | INFO     | [data] control thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:40,709 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:21:42] 2025-11-27 21:20:40,759 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:40,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:40,812 | INFO     | all job control threads have been joined
[2025-11-27 16:21:42] 2025-11-27 21:20:41,090 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,236 | INFO     | [job] validate thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,308 | INFO     | [payload] control thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,446 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,675 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,817 | INFO     | [job] control thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,836 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,940 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:41,944 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:42,202 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:42,571 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:20:44,736 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:21:42] 2025-11-27 21:21:10,715 | INFO     | PID=3244324 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:21:42] 2025-11-27 21:21:10,715 | INFO     | .. there are 97 such processes running
[2025-11-27 16:21:42] 2025-11-27 21:21:10,715 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:21:42] 2025-11-27 21:21:10,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:21:42] 2025-11-27 21:21:10,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:21:42] 2025-11-27 21:21:34,412 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:21:42] 2025-11-27 21:21:35,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140163205818176)>', '<ExcThread(monitor, started 140162365388544)>']
[2025-11-27 16:21:42] 2025-11-27 21:21:35,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:21:42] 2025-11-27 21:21:35,898 | INFO     | [monitor] control thread has ended
[2025-11-27 16:21:42] 2025-11-27 21:21:40,462 | INFO     | all workflow threads have been joined
[2025-11-27 16:21:42] 2025-11-27 21:21:40,462 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:21:42] 2025-11-27 21:21:40,462 | INFO     | traces error code: 0
[2025-11-27 16:21:42] 2025-11-27 21:21:40,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:21:42] 2025-11-27 21:21:40,940 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:21:42] 2025-11-27 21:21:40,949 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:21:42] 2025-11-27 21:21:40,962 [wrapper] pilotpid: 3244324
[2025-11-27 16:21:42] 2025-11-27 21:21:40,998 [wrapper] Pilot exit status: 0
[2025-11-27 16:21:42] 2025-11-27 21:21:41,142 [wrapper] pandaids: 6898377758
[2025-11-27 16:21:42] 2025-11-27 21:21:41,434 [wrapper] cleanup supervisor_pilot 2402757 3244325
[2025-11-27 16:21:42] 2025-11-27 21:21:41,594 [wrapper] Test setup, not cleaning
[2025-11-27 16:21:42] 2025-11-27 21:21:41,609 [wrapper] apfmon messages muted
[2025-11-27 16:21:42] 2025-11-27 21:21:41,647 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:21:42] 2025-11-27 21:21:41,692 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:21:42]  *** Error codes and diagnostics ***
[2025-11-27 16:21:42]     "exeErrorCode": 0,
[2025-11-27 16:21:42]     "exeErrorDiag": "",
[2025-11-27 16:21:42]     "pilotErrorCode": 0,
[2025-11-27 16:21:42]     "pilotErrorDiag": "",
[2025-11-27 16:21:42]  *** Listing of results directory ***
[2025-11-27 16:21:42] total 1309248
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 16:21:42] -rwx------. 1 boincer umatlas     36292 Nov 26 11:32 runpilot2-wrapper.sh
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:32 queuedata.json
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:21:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:51 run_atlas
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:51 job.xml
[2025-11-27 16:21:42] -rw-r--r--. 2 boincer umatlas 411312622 Nov 27 08:51 EVNT.47483658._002579.pool.root.1
[2025-11-27 16:21:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:51 start_atlas.sh
[2025-11-27 16:21:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:51 shared
[2025-11-27 16:21:42] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 08:51 input.tar.gz
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:51 boinc_lockfile
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 08:51 pandaJob.out
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas        57 Nov 27 08:51 setup.sh.local
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas    991588 Nov 27 08:51 agis_schedconf.cvmfs.json
[2025-11-27 16:21:42] drwx------. 5 boincer umatlas      4096 Nov 27 08:51 pilot3
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:46 boinc_task_state.xml
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas 915450735 Nov 27 16:18 HITS.47556161._005616.pool.root.1
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas      1061 Nov 27 16:19 memory_monitor_summary.json
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:19 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas   1806360 Nov 27 16:19 log.47556161._005616.job.log.tgz.1
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas        95 Nov 27 16:20 pilot_heartbeat.json
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas      8592 Nov 27 16:20 heartbeat.json
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 16:21 init_data.xml
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:21 boinc_mmap_file
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas      4825 Nov 27 16:21 pilotlog.txt
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:21 wrapper_checkpoint.txt
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas   3186068 Nov 27 16:21 log.47556161._005616.job.log.1
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas       353 Nov 27 16:21 output.list
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:21 runtime_log
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas   5007360 Nov 27 16:21 result.tar.gz
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 16:21 runtime_log.err
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas       660 Nov 27 16:21 1nFNDmpcXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm91JKDmEcIzTn.diag
[2025-11-27 16:21:42] -rw-r--r--. 1 boincer umatlas     21797 Nov 27 16:21 stderr.txt
[2025-11-27 16:21:42] HITS file was successfully produced:
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas 915450735 Nov 27 16:18 shared/HITS.pool.root.1
[2025-11-27 16:21:42]  *** Contents of shared directory: ***
[2025-11-27 16:21:42] total 1301168
[2025-11-27 16:21:42] -rw-r--r--. 2 boincer umatlas 411312622 Nov 27 08:51 ATLAS.root_0
[2025-11-27 16:21:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:51 start_atlas.sh
[2025-11-27 16:21:42] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 08:51 input.tar.gz
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas 915450735 Nov 27 16:18 HITS.pool.root.1
[2025-11-27 16:21:42] -rw-------. 1 boincer umatlas   5007360 Nov 27 16:21 result.tar.gz
16:21:44 (3236528): run_atlas exited; CPU time 136128.179919
16:21:44 (3236528): called boinc_finish(0)

</stderr_txt>
]]>

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