Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:30:49 (17372): wrapper (7.7.26015): starting
09:30:49 (17372): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:30:49] Arguments: --nthreads 8
[2025-11-27 09:30:49] Threads: 8
[2025-11-27 09:30:49] Checking for CVMFS
[2025-11-27 09:30:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:30:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:30:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:30:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:30:50] 2.11.2.0 2873 61962 93260 153368 3 81 10755228 20275200 1 130560 0 15860077 99.842 3617294 31126 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 09:30:50] CVMFS is ok
[2025-11-27 09:30:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:30:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:30:50] Further information can be found at the LHC@home message board.
[2025-11-27 09:30:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:30:50] Checking for apptainer binary...
[2025-11-27 09:30:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:30:50] Running /usr/bin/apptainer --version
[2025-11-27 09:30:50] apptainer version 1.3.2-1.el7
[2025-11-27 09:30:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:30:51] c-115-13.aglt2.org
[2025-11-27 09:30:51] apptainer works
[2025-11-27 09:30:51] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:30:51] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:30:51] Starting ATLAS job with PandaID=6898376983
[2025-11-27 09:30:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:45:25]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:45:25] 2025-11-28 01:44:51,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,381 | INFO     | time since job start (40424s) is within the limit (172800.0s)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,523 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 20:45:25] 2025-11-28 01:44:52,526 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-27 20:45:25] 2025-11-28 01:44:52,529 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898376983/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,530 | INFO     | extracted standard info from prmon json
[2025-11-27 20:45:25] 2025-11-28 01:44:52,530 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:45:25] 2025-11-28 01:44:52,530 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:45:25] 2025-11-28 01:44:52,544 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:45:25] 2025-11-28 01:44:52,544 | INFO     | sum of square deviations: 89960527326.80977
[2025-11-27 20:45:25] 2025-11-28 01:44:52,553 | INFO     | sum of deviations: 693168667392.2047
[2025-11-27 20:45:25] 2025-11-28 01:44:52,553 | INFO     | mean x: 1764274061.1178248
[2025-11-27 20:45:25] 2025-11-28 01:44:52,553 | INFO     | mean y: 3302936.2537764353
[2025-11-27 20:45:25] 2025-11-28 01:44:52,553 | INFO     | intersect: -13590875935.296913
[2025-11-27 20:45:25] 2025-11-28 01:44:52,554 | INFO     | chi2: 5.202867115296122
[2025-11-27 20:45:25] 2025-11-28 01:44:52,554 | INFO     | sum of square deviations: 87937628092.38657
[2025-11-27 20:45:25] 2025-11-28 01:44:52,563 | INFO     | sum of deviations: 904641492372.3909
[2025-11-27 20:45:25] 2025-11-28 01:44:52,563 | INFO     | mean x: 1764273908.6225266
[2025-11-27 20:45:25] 2025-11-28 01:44:52,563 | INFO     | mean y: 3318861.933028919
[2025-11-27 20:45:25] 2025-11-28 01:44:52,563 | INFO     | intersect: -18146310782.08206
[2025-11-27 20:45:25] 2025-11-28 01:44:52,564 | INFO     | chi2: 2.8747917642388403
[2025-11-27 20:45:25] 2025-11-28 01:44:52,564 | INFO     | current chi2=2.8747917642388403 (change=44.74600829632719 %)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,565 | INFO     | sum of square deviations: 85945247737.68643
[2025-11-27 20:45:25] 2025-11-28 01:44:52,580 | INFO     | sum of deviations: 960598832863.8175
[2025-11-27 20:45:25] 2025-11-28 01:44:52,580 | INFO     | mean x: 1764273756.1257668
[2025-11-27 20:45:25] 2025-11-28 01:44:52,580 | INFO     | mean y: 3323131.8680981593
[2025-11-27 20:45:25] 2025-11-28 01:44:52,581 | INFO     | intersect: -19715734705.503563
[2025-11-27 20:45:25] 2025-11-28 01:44:52,581 | INFO     | chi2: 2.575276842790296
[2025-11-27 20:45:25] 2025-11-28 01:44:52,581 | INFO     | current chi2=2.575276842790296 (change=10.418664933383344 %)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,581 | INFO     | right removable region: 651
[2025-11-27 20:45:25] 2025-11-28 01:44:52,582 | INFO     | sum of square deviations: 87937378602.38657
[2025-11-27 20:45:25] 2025-11-28 01:44:52,598 | INFO     | sum of deviations: 477734573118.7862
[2025-11-27 20:45:25] 2025-11-28 01:44:52,598 | INFO     | mean x: 1764274213.6225266
[2025-11-27 20:45:25] 2025-11-28 01:44:52,598 | INFO     | mean y: 3319145.1765601216
[2025-11-27 20:45:25] 2025-11-28 01:44:52,598 | INFO     | intersect: -9581396725.425539
[2025-11-27 20:45:25] 2025-11-28 01:44:52,599 | INFO     | chi2: 2.7480683477204564
[2025-11-27 20:45:25] 2025-11-28 01:44:52,599 | INFO     | current chi2=2.7480683477204564 (change=47.18165413755624 %)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,600 | INFO     | sum of square deviations: 85944828423.68642
[2025-11-27 20:45:25] 2025-11-28 01:44:52,615 | INFO     | sum of deviations: 440549245923.5982
[2025-11-27 20:45:25] 2025-11-28 01:44:52,615 | INFO     | mean x: 1764274366.1257668
[2025-11-27 20:45:25] 2025-11-28 01:44:52,616 | INFO     | mean y: 3321988.5536809815
[2025-11-27 20:45:25] 2025-11-28 01:44:52,616 | INFO     | intersect: -9040267437.99558
[2025-11-27 20:45:25] 2025-11-28 01:44:52,616 | INFO     | chi2: 2.716908324114178
[2025-11-27 20:45:25] 2025-11-28 01:44:52,616 | INFO     | current chi2=2.716908324114178 (change=1.1338882321513597 %)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,617 | INFO     | left removable region: 20
[2025-11-27 20:45:25] 2025-11-28 01:44:52,617 | INFO     | sum of square deviations: 77905069470.16496
[2025-11-27 20:45:25] 2025-11-28 01:44:52,625 | INFO     | sum of deviations: 662385222053.2504
[2025-11-27 20:45:25] 2025-11-28 01:44:52,625 | INFO     | mean x: 1764274335.6354992
[2025-11-27 20:45:25] 2025-11-28 01:44:52,625 | INFO     | mean y: 3346080.792393027
[2025-11-27 20:45:25] 2025-11-28 01:44:52,625 | INFO     | intersect: -14997336872.456455
[2025-11-27 20:45:25] 2025-11-28 01:44:52,626 | INFO     | chi2: 0.06303841337363927
[2025-11-27 20:45:25] 2025-11-28 01:44:52,626 | INFO     | current memory leak: 8.50 B/s (using 631 data points, chi2=0.06)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,626 | INFO     | could have reported an average CPU frequency of 2394 MHz (26 samples)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | ..............................
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . Timing measurements:
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . get job = 0 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . initial setup = 3 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . payload setup = 8 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . stage-in = 0 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . payload execution = 40380 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . stage-out = 3 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,627 | INFO     | . log creation = 0 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,628 | INFO     | ..............................
[2025-11-27 20:45:25] 2025-11-28 01:44:52,707 | INFO     | 
[2025-11-27 20:45:25] 2025-11-28 01:44:52,707 | INFO     | job summary report
[2025-11-27 20:45:25] 2025-11-28 01:44:52,707 | INFO     | --------------------------------------------------
[2025-11-27 20:45:25] 2025-11-28 01:44:52,707 | INFO     | PanDA job id: 6898376983
[2025-11-27 20:45:25] 2025-11-28 01:44:52,708 | INFO     | task id: 47556161
[2025-11-27 20:45:25] 2025-11-28 01:44:52,708 | INFO     | errors: (none)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:45:25] 2025-11-28 01:44:52,708 | INFO     | pilot state: finished 
[2025-11-27 20:45:25] 2025-11-28 01:44:52,708 | INFO     | transexitcode: 0
[2025-11-27 20:45:25] 2025-11-28 01:44:52,709 | INFO     | exeerrorcode: 0
[2025-11-27 20:45:25] 2025-11-28 01:44:52,709 | INFO     | exeerrordiag: 
[2025-11-27 20:45:25] 2025-11-28 01:44:52,709 | INFO     | exitcode: 0
[2025-11-27 20:45:25] 2025-11-28 01:44:52,709 | INFO     | exitmsg: OK
[2025-11-27 20:45:25] 2025-11-28 01:44:52,709 | INFO     | cpuconsumptiontime: 313982 s
[2025-11-27 20:45:25] 2025-11-28 01:44:52,709 | INFO     | nevents: 1000
[2025-11-27 20:45:25] 2025-11-28 01:44:52,710 | INFO     | neventsw: 0
[2025-11-27 20:45:25] 2025-11-28 01:44:52,710 | INFO     | pid: 27724
[2025-11-27 20:45:25] 2025-11-28 01:44:52,710 | INFO     | pgrp: 27724
[2025-11-27 20:45:25] 2025-11-28 01:44:52,710 | INFO     | corecount: 8
[2025-11-27 20:45:25] 2025-11-28 01:44:52,710 | INFO     | event service: False
[2025-11-27 20:45:25] 2025-11-28 01:44:52,711 | INFO     | sizes: {0: 2284138, 1: 2284337, 6: 2284599, 11: 2284627, 40393: 2327010, 40396: 2336004, 40398: 2336188, 40407: 2336462}
[2025-11-27 20:45:25] 2025-11-28 01:44:52,711 | INFO     | --------------------------------------------------
[2025-11-27 20:45:25] 2025-11-28 01:44:52,711 | INFO     | 
[2025-11-27 20:45:25] 2025-11-28 01:44:52,711 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:45:25] 2025-11-28 01:44:52,738 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,740 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,740 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,740 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,740 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,741 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,741 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,741 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,742 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,742 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,742 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,742 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,742 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,743 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:45:25] 2025-11-28 01:44:52,743 | INFO     | job 6898376983 has completed (purged errors)
[2025-11-27 20:45:25] 2025-11-28 01:44:52,743 | INFO     | overall cleanup function is called
[2025-11-27 20:45:25] 2025-11-28 01:44:53,757 | INFO     | --- collectZombieJob: --- 10, [27724]
[2025-11-27 20:45:25] 2025-11-28 01:44:53,758 | INFO     | zombie collector waiting for pid 27724
[2025-11-27 20:45:25] 2025-11-28 01:44:53,758 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:45:25] 2025-11-28 01:44:53,758 | INFO     | collected zombie processes
[2025-11-27 20:45:25] 2025-11-28 01:44:53,758 | INFO     | will attempt to kill all subprocesses of pid=27724
[2025-11-27 20:45:25] 2025-11-28 01:44:53,845 | INFO     | process IDs to be killed: [27724] (in reverse order)
[2025-11-27 20:45:25] 2025-11-28 01:44:53,901 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:45:25] 2025-11-28 01:44:53,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:45:25] 2025-11-28 01:44:53,907 | INFO     | did not find any defunct processes belonging to 27724
[2025-11-27 20:45:25] 2025-11-28 01:44:53,911 | INFO     | did not find any defunct processes belonging to 27724
[2025-11-27 20:45:25] 2025-11-28 01:44:53,914 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:45:25] 2025-11-28 01:44:53,914 | INFO     | ready for new job
[2025-11-27 20:45:25] 2025-11-28 01:44:53,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:45:25] 2025-11-28 01:44:53,917 | INFO     | ***************************************
[2025-11-27 20:45:25] 2025-11-28 01:44:53,917 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:45:25] 2025-11-28 01:44:53,918 | INFO     | ***************************************
[2025-11-27 20:45:25] 2025-11-28 01:44:53,918 | INFO     | 
[2025-11-27 20:45:25] 2025-11-28 01:44:53,918 | INFO     | architecture information:
[2025-11-27 20:45:25] 2025-11-28 01:44:53,919 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:45:25] 2025-11-28 01:44:53,937 | INFO     | cat /etc/os-release:
[2025-11-27 20:45:25] NAME="CentOS Linux"
[2025-11-27 20:45:25] VERSION="7 (Core)"
[2025-11-27 20:45:25] ID="centos"
[2025-11-27 20:45:25] ID_LIKE="rhel fedora"
[2025-11-27 20:45:25] VERSION_ID="7"
[2025-11-27 20:45:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:45:25] ANSI_COLOR="0;31"
[2025-11-27 20:45:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:45:25] HOME_URL="https://www.centos.org/"
[2025-11-27 20:45:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:45:25] 
[2025-11-27 20:45:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:45:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:45:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:45:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:45:25] 
[2025-11-27 20:45:25] 2025-11-28 01:44:53,937 | INFO     | ***************************************
[2025-11-27 20:45:25] 2025-11-28 01:44:54,440 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:45:25] 2025-11-28 01:44:54,461 | INFO     | sufficient remaining disk space (17461936128 B)
[2025-11-27 20:45:25] 2025-11-28 01:44:54,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:45:25] 2025-11-28 01:44:54,462 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:45:25] 2025-11-28 01:44:54,462 | INFO     | update_server=False
[2025-11-27 20:45:25] 2025-11-28 01:44:54,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:45:25] 2025-11-28 01:44:54,463 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:45:25] 2025-11-28 01:44:54,485 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 20:45:25] 2025-11-28 01:44:54,485 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 20:45:25] 2025-11-28 01:44:54,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:45:25] 2025-11-28 01:44:54,486 | INFO     | will abort loop
[2025-11-27 20:45:25] 2025-11-28 01:44:54,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:45:25] 2025-11-28 01:44:55,220 | INFO     | all payload control threads have been joined
[2025-11-27 20:45:25] 2025-11-28 01:44:55,271 | INFO     | all data control threads have been joined
[2025-11-27 20:45:25] 2025-11-28 01:44:55,398 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:45:25] 2025-11-28 01:44:55,466 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:55,468 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:55,491 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:55,670 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:55,731 | INFO     | all job control threads have been joined
[2025-11-27 20:45:25] 2025-11-28 01:44:55,766 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:55,966 | INFO     | [job] validate thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,033 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,200 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,226 | INFO     | [payload] control thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,273 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,276 | INFO     | [data] control thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,439 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,737 | INFO     | [job] control thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:56,914 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:57,399 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:44:58,790 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:45:25] 2025-11-28 01:45:15,326 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:45:25] 2025-11-28 01:45:15,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139644430243648)>', '<ExcThread(monitor, started 139643454473984)>']
[2025-11-27 20:45:25] 2025-11-28 01:45:20,724 | INFO     | all workflow threads have been joined
[2025-11-27 20:45:25] 2025-11-28 01:45:20,724 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:45:25] 2025-11-28 01:45:20,724 | INFO     | traces error code: 0
[2025-11-27 20:45:25] 2025-11-28 01:45:20,725 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:45:25] 2025-11-28 01:45:25,602 | INFO     | PID=21229 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 20:45:25] 2025-11-28 01:45:25,603 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:45:25] 2025-11-28 01:45:25,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:45:25] 2025-11-28 01:45:25,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:45:25] 2025-11-28 01:45:25,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:45:25] 2025-11-28 01:45:25,603 | INFO     | [monitor] control thread has ended
[2025-11-27 20:45:25] 2025-11-28 01:45:25,698 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:45:25] 2025-11-28 01:45:25,703 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:45:25] 2025-11-28 01:45:25,708 [wrapper] pilotpid: 21229
[2025-11-27 20:45:25] 2025-11-28 01:45:25,712 [wrapper] Pilot exit status: 0
[2025-11-27 20:45:25] 2025-11-28 01:45:25,729 [wrapper] pandaids: 6898376983
[2025-11-27 20:45:25] 2025-11-28 01:45:25,772 [wrapper] cleanup supervisor_pilot 26819 21230
[2025-11-27 20:45:25] 2025-11-28 01:45:25,777 [wrapper] Test setup, not cleaning
[2025-11-27 20:45:25] 2025-11-28 01:45:25,782 [wrapper] apfmon messages muted
[2025-11-27 20:45:25] 2025-11-28 01:45:25,786 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:45:25] 2025-11-28 01:45:25,791 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:45:25]  *** Error codes and diagnostics ***
[2025-11-27 20:45:25]     "exeErrorCode": 0,
[2025-11-27 20:45:25]     "exeErrorDiag": "",
[2025-11-27 20:45:25]     "pilotErrorCode": 0,
[2025-11-27 20:45:25]     "pilotErrorDiag": "",
[2025-11-27 20:45:25]  *** Listing of results directory ***
[2025-11-27 20:45:25] total 1318540
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 10:57 pilot3.tar.gz
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 10:59 queuedata.json
[2025-11-27 20:45:25] -rwx------ 1 boincer umatlas     36292 Nov 26 11:00 runpilot2-wrapper.sh
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas       100 Nov 27 09:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:45:25] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 09:30 run_atlas
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas       105 Nov 27 09:30 job.xml
[2025-11-27 20:45:25] -rw-r--r-- 2 boincer umatlas 411670656 Nov 27 09:30 EVNT.47483658._002564.pool.root.1
[2025-11-27 20:45:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 09:30 start_atlas.sh
[2025-11-27 20:45:25] drwxrwx--x 2 boincer umatlas      4096 Nov 27 09:30 shared
[2025-11-27 20:45:25] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 09:30 input.tar.gz
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas         0 Nov 27 09:30 boinc_lockfile
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas      2783 Nov 27 09:30 pandaJob.out
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas        57 Nov 27 09:30 setup.sh.local
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas    991580 Nov 27 09:31 agis_schedconf.cvmfs.json
[2025-11-27 20:45:25] drwx------ 5 boincer umatlas      4096 Nov 27 09:31 pilot3
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas       533 Nov 27 20:34 boinc_task_state.xml
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas      5913 Nov 27 20:38 init_data.xml
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas 919614200 Nov 27 20:44 HITS.47556161._005461.pool.root.1
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas        95 Nov 27 20:44 pilot_heartbeat.json
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas      1061 Nov 27 20:44 memory_monitor_summary.json
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas   1516240 Nov 27 20:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas   1915926 Nov 27 20:44 log.47556161._005461.job.log.tgz.1
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas      7966 Nov 27 20:44 heartbeat.json
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 20:45 boinc_mmap_file
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas        29 Nov 27 20:45 wrapper_checkpoint.txt
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas       745 Nov 27 20:45 pilotlog.txt
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas   5578377 Nov 27 20:45 log.47556161._005461.job.log.1
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas       353 Nov 27 20:45 output.list
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas       620 Nov 27 20:45 runtime_log
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas   7516160 Nov 27 20:45 result.tar.gz
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas       668 Nov 27 20:45 xghMDmx7Wi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG7MKDmQZY7Gn.diag
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas      9343 Nov 27 20:45 runtime_log.err
[2025-11-27 20:45:25] -rw-r--r-- 1 boincer umatlas     21300 Nov 27 20:45 stderr.txt
[2025-11-27 20:45:25] HITS file was successfully produced:
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas 919614200 Nov 27 20:44 shared/HITS.pool.root.1
[2025-11-27 20:45:25]  *** Contents of shared directory: ***
[2025-11-27 20:45:25] total 1308028
[2025-11-27 20:45:25] -rw-r--r-- 2 boincer umatlas 411670656 Nov 27 09:30 ATLAS.root_0
[2025-11-27 20:45:25] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 09:30 start_atlas.sh
[2025-11-27 20:45:25] -rw-r--r-- 2 boincer umatlas    590107 Nov 27 09:30 input.tar.gz
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas 919614200 Nov 27 20:44 HITS.pool.root.1
[2025-11-27 20:45:25] -rw------- 1 boincer umatlas   7516160 Nov 27 20:45 result.tar.gz
20:45:27 (17372): run_atlas exited; CPU time 312116.646407
20:45:27 (17372): called boinc_finish(0)

</stderr_txt>
]]>

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