Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:53:33 (13540): wrapper (7.7.26015): starting
08:53:33 (13540): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:53:33] Arguments: --nthreads 8
[2025-11-27 08:53:33] Threads: 8
[2025-11-27 08:53:33] Checking for CVMFS
[2025-11-27 08:53:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:53:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:53:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:53:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:53:33] 2.11.2.0 7040 119208 142484 153366 2 90 17530733 18432000 1692 130560 0 86235425 99.975 4929776 31304 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 08:53:33] CVMFS is ok
[2025-11-27 08:53:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:53:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:53:33] Further information can be found at the LHC@home message board.
[2025-11-27 08:53:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:53:33] Checking for apptainer binary...
[2025-11-27 08:53:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:53:33] Running /usr/bin/apptainer --version
[2025-11-27 08:53:33] apptainer version 1.3.2-1.el7
[2025-11-27 08:53:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:53:34] c-206-7.aglt2.org
[2025-11-27 08:53:34] apptainer works
[2025-11-27 08:53:34] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:53:34] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:53:34] Starting ATLAS job with PandaID=6898377133
[2025-11-27 08:53:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 04:39:54]  *** The last 200 lines of the pilot log: ***
[2025-11-28 04:39:54] 2025-11-28 09:39:21,114 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898377133/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,115 | INFO     | extracted standard info from prmon json
[2025-11-28 04:39:54] 2025-11-28 09:39:21,115 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 04:39:54] 2025-11-28 09:39:21,115 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 04:39:54] 2025-11-28 09:39:21,146 | INFO     | fitting pss+swap vs Time
[2025-11-28 04:39:54] 2025-11-28 09:39:21,148 | INFO     | sum of square deviations: 491556201437.37585
[2025-11-28 04:39:54] 2025-11-28 09:39:21,153 | INFO     | monitor loop #5098: job 0:6898377133 is in state 'finished'
[2025-11-28 04:39:54] 2025-11-28 09:39:21,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,192 | INFO     | sum of deviations: 2354397018120.7812
[2025-11-28 04:39:54] 2025-11-28 09:39:21,192 | INFO     | mean x: 1764287181.055746
[2025-11-28 04:39:54] 2025-11-28 09:39:21,193 | INFO     | mean y: 2862730.7264150945
[2025-11-28 04:39:54] 2025-11-28 09:39:21,193 | INFO     | intersect: -8447508693.822818
[2025-11-28 04:39:54] 2025-11-28 09:39:21,195 | INFO     | chi2: 5.339155348861826
[2025-11-28 04:39:54] 2025-11-28 09:39:21,196 | INFO     | sum of square deviations: 485259843808.32556
[2025-11-28 04:39:54] 2025-11-28 09:39:21,240 | INFO     | sum of deviations: 2685922548326.879
[2025-11-28 04:39:54] 2025-11-28 09:39:21,240 | INFO     | mean x: 1764287028.5581396
[2025-11-28 04:39:54] 2025-11-28 09:39:21,240 | INFO     | mean y: 2870757.5943152453
[2025-11-28 04:39:54] 2025-11-28 09:39:21,240 | INFO     | intersect: -9762491804.729523
[2025-11-28 04:39:54] 2025-11-28 09:39:21,242 | INFO     | chi2: 2.92534269883666
[2025-11-28 04:39:54] 2025-11-28 09:39:21,242 | INFO     | current chi2=2.92534269883666 (change=45.209635088436414 %)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,244 | INFO     | sum of square deviations: 479017487191.7616
[2025-11-28 04:39:54] 2025-11-28 09:39:21,287 | INFO     | sum of deviations: 2802249610725.39
[2025-11-28 04:39:54] 2025-11-28 09:39:21,287 | INFO     | mean x: 1764286876.0605536
[2025-11-28 04:39:54] 2025-11-28 09:39:21,288 | INFO     | mean y: 2873598.337370242
[2025-11-28 04:39:54] 2025-11-28 09:39:21,288 | INFO     | intersect: -10318194721.386448
[2025-11-28 04:39:54] 2025-11-28 09:39:21,289 | INFO     | chi2: 2.524096384981137
[2025-11-28 04:39:54] 2025-11-28 09:39:21,290 | INFO     | current chi2=2.524096384981137 (change=13.716215676716766 %)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,290 | INFO     | right removable region: 1155
[2025-11-28 04:39:54] 2025-11-28 09:39:21,291 | INFO     | sum of square deviations: 485259448528.32587
[2025-11-28 04:39:54] 2025-11-28 09:39:21,336 | INFO     | sum of deviations: 2047047055699.5588
[2025-11-28 04:39:54] 2025-11-28 09:39:21,336 | INFO     | mean x: 1764287333.5581396
[2025-11-28 04:39:54] 2025-11-28 09:39:21,336 | INFO     | mean y: 2870166.6658053403
[2025-11-28 04:39:54] 2025-11-28 09:39:21,336 | INFO     | intersect: -7439703496.806916
[2025-11-28 04:39:54] 2025-11-28 09:39:21,338 | INFO     | chi2: 3.269129912962183
[2025-11-28 04:39:54] 2025-11-28 09:39:21,338 | INFO     | current chi2=3.269129912962183 (change=38.770653795284694 %)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,341 | INFO     | sum of square deviations: 479016838152.0008
[2025-11-28 04:39:54] 2025-11-28 09:39:21,371 | INFO     | sum of deviations: 1958850648992.296
[2025-11-28 04:39:54] 2025-11-28 09:39:21,372 | INFO     | mean x: 1764287486.0588236
[2025-11-28 04:39:54] 2025-11-28 09:39:21,372 | INFO     | mean y: 2872320.922145329
[2025-11-28 04:39:54] 2025-11-28 09:39:21,372 | INFO     | intersect: -7211854619.383591
[2025-11-28 04:39:54] 2025-11-28 09:39:21,373 | INFO     | chi2: 3.191988308483846
[2025-11-28 04:39:54] 2025-11-28 09:39:21,374 | INFO     | current chi2=3.191988308483846 (change=2.359698345803538 %)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,374 | INFO     | left removable region: 20
[2025-11-28 04:39:54] 2025-11-28 09:39:21,375 | INFO     | sum of square deviations: 453382941186.99005
[2025-11-28 04:39:54] 2025-11-28 09:39:21,413 | INFO     | sum of deviations: 2301072867481.6353
[2025-11-28 04:39:54] 2025-11-28 09:39:21,413 | INFO     | mean x: 1764287455.5647578
[2025-11-28 04:39:54] 2025-11-28 09:39:21,413 | INFO     | mean y: 2887068.6308370046
[2025-11-28 04:39:54] 2025-11-28 09:39:21,414 | INFO     | intersect: -8951472757.545109
[2025-11-28 04:39:54] 2025-11-28 09:39:21,415 | INFO     | chi2: 0.25749611441872405
[2025-11-28 04:39:54] 2025-11-28 09:39:21,416 | INFO     | current memory leak: 5.08 B/s (using 1135 data points, chi2=0.26)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,417 | INFO     | could have reported an average CPU frequency of 2606 MHz (42 samples)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,418 | INFO     | ..............................
[2025-11-28 04:39:54] 2025-11-28 09:39:21,418 | INFO     | . Timing measurements:
[2025-11-28 04:39:54] 2025-11-28 09:39:21,418 | INFO     | . get job = 0 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,418 | INFO     | . initial setup = 2 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,419 | INFO     | . payload setup = 4 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,419 | INFO     | . stage-in = 0 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,419 | INFO     | . payload execution = 71103 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,419 | INFO     | . stage-out = 4 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,420 | INFO     | . log creation = 0 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,420 | INFO     | ..............................
[2025-11-28 04:39:54] 2025-11-28 09:39:21,767 | INFO     | PID=17367 has CPU usage=17.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 04:39:54] 2025-11-28 09:39:21,767 | INFO     | .. there are 3 such processes running
[2025-11-28 04:39:54] 2025-11-28 09:39:21,859 | INFO     | 
[2025-11-28 04:39:54] 2025-11-28 09:39:21,859 | INFO     | job summary report
[2025-11-28 04:39:54] 2025-11-28 09:39:21,859 | INFO     | --------------------------------------------------
[2025-11-28 04:39:54] 2025-11-28 09:39:21,860 | INFO     | PanDA job id: 6898377133
[2025-11-28 04:39:54] 2025-11-28 09:39:21,860 | INFO     | task id: 47556161
[2025-11-28 04:39:54] 2025-11-28 09:39:21,860 | INFO     | errors: (none)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,860 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 04:39:54] 2025-11-28 09:39:21,860 | INFO     | pilot state: finished 
[2025-11-28 04:39:54] 2025-11-28 09:39:21,860 | INFO     | transexitcode: 0
[2025-11-28 04:39:54] 2025-11-28 09:39:21,861 | INFO     | exeerrorcode: 0
[2025-11-28 04:39:54] 2025-11-28 09:39:21,861 | INFO     | exeerrordiag: 
[2025-11-28 04:39:54] 2025-11-28 09:39:21,861 | INFO     | exitcode: 0
[2025-11-28 04:39:54] 2025-11-28 09:39:21,861 | INFO     | exitmsg: OK
[2025-11-28 04:39:54] 2025-11-28 09:39:21,861 | INFO     | cpuconsumptiontime: 546428 s
[2025-11-28 04:39:54] 2025-11-28 09:39:21,861 | INFO     | nevents: 1000
[2025-11-28 04:39:54] 2025-11-28 09:39:21,861 | INFO     | neventsw: 0
[2025-11-28 04:39:54] 2025-11-28 09:39:21,862 | INFO     | pid: 23903
[2025-11-28 04:39:54] 2025-11-28 09:39:21,862 | INFO     | pgrp: 23903
[2025-11-28 04:39:54] 2025-11-28 09:39:21,862 | INFO     | corecount: 8
[2025-11-28 04:39:54] 2025-11-28 09:39:21,862 | INFO     | event service: False
[2025-11-28 04:39:54] 2025-11-28 09:39:21,862 | INFO     | sizes: {0: 2284315, 3: 2284577, 11: 2284605, 71112: 2341570, 71117: 2350564, 71119: 2350620, 71123: 2350994}
[2025-11-28 04:39:54] 2025-11-28 09:39:21,862 | INFO     | --------------------------------------------------
[2025-11-28 04:39:54] 2025-11-28 09:39:21,863 | INFO     | 
[2025-11-28 04:39:54] 2025-11-28 09:39:21,863 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 04:39:54] 2025-11-28 09:39:21,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,882 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,882 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,883 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,883 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,883 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,883 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,884 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,884 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,884 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 04:39:54] 2025-11-28 09:39:21,885 | INFO     | job 6898377133 has completed (purged errors)
[2025-11-28 04:39:54] 2025-11-28 09:39:21,885 | INFO     | overall cleanup function is called
[2025-11-28 04:39:54] 2025-11-28 09:39:22,902 | INFO     | --- collectZombieJob: --- 10, [23903]
[2025-11-28 04:39:54] 2025-11-28 09:39:22,917 | INFO     | zombie collector waiting for pid 23903
[2025-11-28 04:39:54] 2025-11-28 09:39:22,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 04:39:54] 2025-11-28 09:39:22,917 | INFO     | collected zombie processes
[2025-11-28 04:39:54] 2025-11-28 09:39:22,918 | INFO     | will attempt to kill all subprocesses of pid=23903
[2025-11-28 04:39:54] 2025-11-28 09:39:23,088 | INFO     | process IDs to be killed: [23903] (in reverse order)
[2025-11-28 04:39:54] 2025-11-28 09:39:23,150 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 04:39:54] 2025-11-28 09:39:23,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 04:39:54] 2025-11-28 09:39:23,156 | INFO     | did not find any defunct processes belonging to 23903
[2025-11-28 04:39:54] 2025-11-28 09:39:23,161 | INFO     | did not find any defunct processes belonging to 23903
[2025-11-28 04:39:54] 2025-11-28 09:39:23,166 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 04:39:54] 2025-11-28 09:39:23,166 | INFO     | ready for new job
[2025-11-28 04:39:54] 2025-11-28 09:39:23,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 04:39:54] 2025-11-28 09:39:23,171 | INFO     | ***************************************
[2025-11-28 04:39:54] 2025-11-28 09:39:23,171 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 04:39:54] 2025-11-28 09:39:23,171 | INFO     | ***************************************
[2025-11-28 04:39:54] 2025-11-28 09:39:23,171 | INFO     | 
[2025-11-28 04:39:54] 2025-11-28 09:39:23,172 | INFO     | architecture information:
[2025-11-28 04:39:54] 2025-11-28 09:39:23,173 | INFO     | executing command: cat /etc/os-release
[2025-11-28 04:39:54] 2025-11-28 09:39:23,187 | INFO     | cat /etc/os-release:
[2025-11-28 04:39:54] NAME="CentOS Linux"
[2025-11-28 04:39:54] VERSION="7 (Core)"
[2025-11-28 04:39:54] ID="centos"
[2025-11-28 04:39:54] ID_LIKE="rhel fedora"
[2025-11-28 04:39:54] VERSION_ID="7"
[2025-11-28 04:39:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 04:39:54] ANSI_COLOR="0;31"
[2025-11-28 04:39:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 04:39:54] HOME_URL="https://www.centos.org/"
[2025-11-28 04:39:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 04:39:54] 
[2025-11-28 04:39:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 04:39:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 04:39:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 04:39:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 04:39:54] 
[2025-11-28 04:39:54] 2025-11-28 09:39:23,188 | INFO     | ***************************************
[2025-11-28 04:39:54] 2025-11-28 09:39:23,691 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 04:39:54] 2025-11-28 09:39:23,709 | INFO     | sufficient remaining disk space (25702694912 B)
[2025-11-28 04:39:54] 2025-11-28 09:39:23,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 04:39:54] 2025-11-28 09:39:23,709 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 04:39:54] 2025-11-28 09:39:23,709 | INFO     | update_server=False
[2025-11-28 04:39:54] 2025-11-28 09:39:23,709 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 04:39:54] 2025-11-28 09:39:23,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 04:39:54] 2025-11-28 09:39:24,089 | INFO     | all data control threads have been joined
[2025-11-28 04:39:54] 2025-11-28 09:39:24,176 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 04:39:54] 2025-11-28 09:39:24,182 | INFO     | all payload control threads have been joined
[2025-11-28 04:39:54] 2025-11-28 09:39:24,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:39:54] 2025-11-28 09:39:24,685 | INFO     | aborting loop
[2025-11-28 04:39:54] 2025-11-28 09:39:24,715 | INFO     | [job] retrieve thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:24,727 | INFO     | [payload] validate_post thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:24,799 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,092 | INFO     | [data] control thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,185 | INFO     | [payload] control thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,198 | INFO     | [payload] failed_post thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,206 | INFO     | all job control threads have been joined
[2025-11-28 04:39:54] 2025-11-28 09:39:25,221 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,314 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,692 | INFO     | [job] job monitor thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,869 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,949 | INFO     | [data] copytool_in thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:25,949 | INFO     | [job] validate thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:26,182 | INFO     | [data] copytool_out thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:26,213 | INFO     | [job] control thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:26,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 04:39:54] 2025-11-28 09:39:27,600 | INFO     | [job] queue monitor thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:27,716 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 04:39:54] 2025-11-28 09:39:41,245 | INFO     | [monitor] cgroup control has ended
[2025-11-28 04:39:54] 2025-11-28 09:39:42,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483463542592)>', '<ExcThread(monitor, started 140482810214144)>']
[2025-11-28 04:39:54] 2025-11-28 09:39:47,519 | INFO     | all workflow threads have been joined
[2025-11-28 04:39:54] 2025-11-28 09:39:47,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 04:39:54] 2025-11-28 09:39:47,519 | INFO     | traces error code: 0
[2025-11-28 04:39:54] 2025-11-28 09:39:47,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 04:39:54] 2025-11-28 09:39:54,037 | INFO     | PID=17367 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 04:39:54] 2025-11-28 09:39:54,044 | INFO     | .. there are 3 such processes running
[2025-11-28 04:39:54] 2025-11-28 09:39:54,044 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 04:39:54] 2025-11-28 09:39:54,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 04:39:54] 2025-11-28 09:39:54,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 04:39:54] 2025-11-28 09:39:54,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 04:39:54] 2025-11-28 09:39:54,045 | CRITICAL | thread 'MainThread' is not alive
[2025-11-28 04:39:54] 2025-11-28 09:39:54,045 | INFO     | [monitor] control thread has ended
[2025-11-28 04:39:54] 2025-11-28 09:39:54,170 [wrapper] ==== pilot stdout END ====
[2025-11-28 04:39:54] 2025-11-28 09:39:54,173 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 04:39:54] 2025-11-28 09:39:54,175 [wrapper] pilotpid: 17367
[2025-11-28 04:39:54] 2025-11-28 09:39:54,177 [wrapper] Pilot exit status: 0
[2025-11-28 04:39:54] 2025-11-28 09:39:54,186 [wrapper] pandaids: 6898377133
[2025-11-28 04:39:54] 2025-11-28 09:39:54,215 [wrapper] cleanup supervisor_pilot  4206 17368
[2025-11-28 04:39:54] 2025-11-28 09:39:54,218 [wrapper] Test setup, not cleaning
[2025-11-28 04:39:54] 2025-11-28 09:39:54,220 [wrapper] apfmon messages muted
[2025-11-28 04:39:54] 2025-11-28 09:39:54,222 [wrapper] ==== wrapper stdout END ====
[2025-11-28 04:39:54] 2025-11-28 09:39:54,225 [wrapper] ==== wrapper stderr END ====
[2025-11-28 04:39:54]  *** Error codes and diagnostics ***
[2025-11-28 04:39:54]     "exeErrorCode": 0,
[2025-11-28 04:39:54]     "exeErrorDiag": "",
[2025-11-28 04:39:54]     "pilotErrorCode": 0,
[2025-11-28 04:39:54]     "pilotErrorDiag": "",
[2025-11-28 04:39:54]  *** Listing of results directory ***
[2025-11-28 04:39:54] total 1341456
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 11:18 queuedata.json
[2025-11-28 04:39:54] -rwx------ 1 boincer umatlas     36292 Nov 26 11:20 runpilot2-wrapper.sh
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas       100 Nov 27 08:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 04:39:54] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 08:53 run_atlas
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas       105 Nov 27 08:53 job.xml
[2025-11-28 04:39:54] -rw-r--r-- 2 boincer umatlas 409560181 Nov 27 08:53 EVNT.47483658._002572.pool.root.1
[2025-11-28 04:39:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 08:53 start_atlas.sh
[2025-11-28 04:39:54] drwxrwx--x 2 boincer umatlas      4096 Nov 27 08:53 shared
[2025-11-28 04:39:54] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 08:53 input.tar.gz
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas         0 Nov 27 08:53 boinc_lockfile
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 08:53 pandaJob.out
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas        57 Nov 27 08:53 setup.sh.local
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas    991588 Nov 27 08:53 agis_schedconf.cvmfs.json
[2025-11-28 04:39:54] drwx------ 5 boincer umatlas      4096 Nov 27 08:53 pilot3
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas       533 Nov 28 04:26 boinc_task_state.xml
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas      5952 Nov 28 04:29 init_data.xml
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas 935817966 Nov 28 04:38 HITS.47556161._005548.pool.root.1
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas      1068 Nov 28 04:39 memory_monitor_summary.json
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas        95 Nov 28 04:39 pilot_heartbeat.json
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas   1516240 Nov 28 04:39 agis_ddmendpoints.agis.ALL.json
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas   2322323 Nov 28 04:39 log.47556161._005548.job.log.tgz.1
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas      8661 Nov 28 04:39 heartbeat.json
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 04:39 boinc_mmap_file
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas        29 Nov 28 04:39 wrapper_checkpoint.txt
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas       890 Nov 28 04:39 pilotlog.txt
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas   9855461 Nov 28 04:39 log.47556161._005548.job.log.1
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas       353 Nov 28 04:39 output.list
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas       620 Nov 28 04:39 runtime_log
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas  12195840 Nov 28 04:39 result.tar.gz
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas      9338 Nov 28 04:39 runtime_log.err
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas       667 Nov 28 04:39 77XKDmtQXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk8MKDmWk0dqn.diag
[2025-11-28 04:39:54] -rw-r--r-- 1 boincer umatlas     21352 Nov 28 04:39 stderr.txt
[2025-11-28 04:39:54] HITS file was successfully produced:
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas 935817966 Nov 28 04:38 shared/HITS.pool.root.1
[2025-11-28 04:39:54]  *** Contents of shared directory: ***
[2025-11-28 04:39:54] total 1326364
[2025-11-28 04:39:54] -rw-r--r-- 2 boincer umatlas 409560181 Nov 27 08:53 ATLAS.root_0
[2025-11-28 04:39:54] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 08:53 start_atlas.sh
[2025-11-28 04:39:54] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 08:53 input.tar.gz
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas 935817966 Nov 28 04:38 HITS.pool.root.1
[2025-11-28 04:39:54] -rw------- 1 boincer umatlas  12195840 Nov 28 04:39 result.tar.gz
04:39:56 (13540): run_atlas exited; CPU time 545071.600936
04:39:56 (13540): called boinc_finish(0)

</stderr_txt>
]]>

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