Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:14:35 (512541): wrapper (7.7.26015): starting
09:14:35 (512541): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:14:35] Arguments: --nthreads 8
[2025-11-27 09:14:35] Threads: 8
[2025-11-27 09:14:35] Checking for CVMFS
[2025-11-27 09:14:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:14:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:14:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:14:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:14:37] 2.13.3.0 7385 31533 267448 153366 1 638 23483856 32503809 71807 16776704 0 460900884 99.665 391020359 48629 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 09:14:37] CVMFS is ok
[2025-11-27 09:14:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:14:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:14:37] Further information can be found at the LHC@home message board.
[2025-11-27 09:14:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:14:37] Checking for apptainer binary...
[2025-11-27 09:14:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:14:37] Running /usr/bin/apptainer --version
[2025-11-27 09:14:37] apptainer version 1.4.4-1.el9
[2025-11-27 09:14:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:14:37] c8-7-1.aglt2.org
[2025-11-27 09:14:37] apptainer works
[2025-11-27 09:14:37] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:14:37] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:14:38] Starting ATLAS job with PandaID=6898377072
[2025-11-27 09:14:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:46:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:46:38] 2025-11-27 22:45:46,940 | INFO     | monitor loop #1705: job 0:6898377072 is in state 'finished'
[2025-11-27 17:46:38] 2025-11-27 22:45:46,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:46:38] 2025-11-27 22:45:48,257 | INFO     | time since job start (30611s) is within the limit (172800.0s)
[2025-11-27 17:46:38] 2025-11-27 22:45:49,458 | INFO     | monitor loop #1706: job 0:6898377072 is in state 'finished'
[2025-11-27 17:46:38] 2025-11-27 22:45:49,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:46:38] 2025-11-27 22:45:50,283 | INFO     | time since job start (30613s) is within the limit (172800.0s)
[2025-11-27 17:46:38] 2025-11-27 22:45:51,977 | INFO     | monitor loop #1707: job 0:6898377072 is in state 'finished'
[2025-11-27 17:46:38] 2025-11-27 22:45:51,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:46:38] 2025-11-27 22:45:52,296 | INFO     | time since job start (30615s) is within the limit (172800.0s)
[2025-11-27 17:46:38] 2025-11-27 22:45:54,303 | INFO     | time since job start (30617s) is within the limit (172800.0s)
[2025-11-27 17:46:38] 2025-11-27 22:45:54,482 | INFO     | monitor loop #1708: job 0:6898377072 is in state 'finished'
[2025-11-27 17:46:38] 2025-11-27 22:45:54,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:46:38] 2025-11-27 22:45:57,004 | INFO     | monitor loop #1709: job 0:6898377072 is in state 'finished'
[2025-11-27 17:46:38] 2025-11-27 22:45:57,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:46:38] 2025-11-27 22:45:58,248 | INFO     | PID=524567 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 17:46:38] 2025-11-27 22:45:58,248 | INFO     | .. there are 113 such processes running
[2025-11-27 17:46:38] 2025-11-27 22:45:58,866 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:46:38] 2025-11-27 22:45:58,873 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3796.0569687500015
[2025-11-27 17:46:38] 2025-11-27 22:45:58,900 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6898377072/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:46:38] 2025-11-27 22:45:58,901 | INFO     | extracted standard info from prmon json
[2025-11-27 17:46:38] 2025-11-27 22:45:58,901 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:46:38] 2025-11-27 22:45:58,901 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:46:38] 2025-11-27 22:45:58,964 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:46:38] 2025-11-27 22:45:58,964 | INFO     | sum of square deviations: 38527751576.42473
[2025-11-27 17:46:38] 2025-11-27 22:45:58,972 | INFO     | sum of deviations: 222258508984.2964
[2025-11-27 17:46:38] 2025-11-27 22:45:58,972 | INFO     | mean x: 1764268286.8476954
[2025-11-27 17:46:38] 2025-11-27 22:45:58,972 | INFO     | mean y: 2799411.214428858
[2025-11-27 17:46:38] 2025-11-27 22:45:58,972 | INFO     | intersect: -10174893883.584265
[2025-11-27 17:46:38] 2025-11-27 22:45:58,972 | INFO     | chi2: 16.46041535255359
[2025-11-27 17:46:38] 2025-11-27 22:45:58,972 | INFO     | sum of square deviations: 37381282345.29544
[2025-11-27 17:46:38] 2025-11-27 22:45:58,979 | INFO     | sum of deviations: 393682200756.0569
[2025-11-27 17:46:38] 2025-11-27 22:45:58,980 | INFO     | mean x: 1764268134.3562753
[2025-11-27 17:46:38] 2025-11-27 22:45:58,980 | INFO     | mean y: 2822210.4655870446
[2025-11-27 17:46:38] 2025-11-27 22:45:58,980 | INFO     | intersect: -18577625497.064007
[2025-11-27 17:46:38] 2025-11-27 22:45:58,980 | INFO     | chi2: 12.720868996404583
[2025-11-27 17:46:38] 2025-11-27 22:45:58,980 | INFO     | current chi2=12.720868996404583 (change=22.718420380375584 %)
[2025-11-27 17:46:38] 2025-11-27 22:45:58,980 | INFO     | right removable region: 493
[2025-11-27 17:46:38] 2025-11-27 22:45:58,980 | INFO     | sum of square deviations: 37381024315.29543
[2025-11-27 17:46:38] 2025-11-27 22:45:58,985 | INFO     | sum of deviations: 30472963833.971603
[2025-11-27 17:46:38] 2025-11-27 22:45:58,985 | INFO     | mean x: 1764268439.3562753
[2025-11-27 17:46:38] 2025-11-27 22:45:58,985 | INFO     | mean y: 2824909.767206478
[2025-11-27 17:46:38] 2025-11-27 22:45:58,985 | INFO     | intersect: -1435404494.8754842
[2025-11-27 17:46:38] 2025-11-27 22:45:58,985 | INFO     | chi2: 12.473331401481094
[2025-11-27 17:46:38] 2025-11-27 22:45:58,985 | INFO     | current chi2=12.473331401481094 (change=24.222256034711535 %)
[2025-11-27 17:46:38] 2025-11-27 22:45:58,985 | INFO     | left removable region: 10
[2025-11-27 17:46:38] 2025-11-27 22:45:58,992 | INFO     | sum of square deviations: 34939115709.29597
[2025-11-27 17:46:38] 2025-11-27 22:45:59,003 | INFO     | sum of deviations: 132331918058.30048
[2025-11-27 17:46:38] 2025-11-27 22:45:59,003 | INFO     | mean x: 1764268408.873706
[2025-11-27 17:46:38] 2025-11-27 22:45:59,003 | INFO     | mean y: 2868891.480331263
[2025-11-27 17:46:38] 2025-11-27 22:45:59,003 | INFO     | intersect: -6679298581.172853
[2025-11-27 17:46:38] 2025-11-27 22:45:59,003 | INFO     | chi2: 6.113507129214144
[2025-11-27 17:46:38] 2025-11-27 22:45:59,003 | INFO     | current memory leak: 3.79 B/s (using 483 data points, chi2=6.11)
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | could have reported an average CPU frequency of 3796 MHz (20 samples)
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | ..............................
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | . Timing measurements:
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | . get job = 0 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | . initial setup = 4 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | . payload setup = 48 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | . stage-in = 0 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | . payload execution = 30462 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,004 | INFO     | . stage-out = 6 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,005 | INFO     | . log creation = 2 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,005 | INFO     | ..............................
[2025-11-27 17:46:38] 2025-11-27 22:45:59,330 | INFO     | time since job start (30622s) is within the limit (172800.0s)
[2025-11-27 17:46:38] 2025-11-27 22:45:59,347 | INFO     | 
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | job summary report
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | --------------------------------------------------
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | PanDA job id: 6898377072
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | task id: 47556161
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | errors: (none)
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | pilot state: finished 
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | transexitcode: 0
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | exeerrorcode: 0
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | exeerrordiag: 
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | exitcode: 0
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | exitmsg: OK
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | cpuconsumptiontime: 135704 s
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | nevents: 1000
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | neventsw: 0
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | pid: 548681
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | pgrp: 548681
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | corecount: 8
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | event service: False
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | sizes: {0: 2284316, 1: 2284316, 12: 2284344, 22: 2284372, 27: 2284662, 33: 2284690, 30512: 2323467, 30519: 2332519, 30558: 2332709}
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | --------------------------------------------------
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | 
[2025-11-27 17:46:38] 2025-11-27 22:45:59,348 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 17:46:38] 2025-11-27 22:45:59,567 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:46:38] 2025-11-27 22:45:59,568 | INFO     | job 6898377072 has completed (purged errors)
[2025-11-27 17:46:38] 2025-11-27 22:45:59,569 | INFO     | overall cleanup function is called
[2025-11-27 17:46:38] 2025-11-27 22:46:00,597 | INFO     | --- collectZombieJob: --- 10, [548681]
[2025-11-27 17:46:38] 2025-11-27 22:46:00,597 | INFO     | zombie collector waiting for pid 548681
[2025-11-27 17:46:38] 2025-11-27 22:46:00,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:46:38] 2025-11-27 22:46:00,597 | INFO     | collected zombie processes
[2025-11-27 17:46:38] 2025-11-27 22:46:00,597 | INFO     | will attempt to kill all subprocesses of pid=548681
[2025-11-27 17:46:38] 2025-11-27 22:46:02,778 | INFO     | process IDs to be killed: [548681] (in reverse order)
[2025-11-27 17:46:38] 2025-11-27 22:46:05,171 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:46:38] 2025-11-27 22:46:05,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:46:38] 2025-11-27 22:46:05,737 | INFO     | did not find any defunct processes belonging to 548681
[2025-11-27 17:46:38] 2025-11-27 22:46:05,959 | INFO     | did not find any defunct processes belonging to 548681
[2025-11-27 17:46:38] 2025-11-27 22:46:05,960 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:46:38] 2025-11-27 22:46:05,961 | INFO     | ready for new job
[2025-11-27 17:46:38] 2025-11-27 22:46:05,961 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:46:38] 2025-11-27 22:46:05,963 | INFO     | ***************************************
[2025-11-27 17:46:38] 2025-11-27 22:46:05,963 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:46:38] 2025-11-27 22:46:05,963 | INFO     | ***************************************
[2025-11-27 17:46:38] 2025-11-27 22:46:05,963 | INFO     | 
[2025-11-27 17:46:38] 2025-11-27 22:46:05,968 | INFO     | architecture information:
[2025-11-27 17:46:38] 2025-11-27 22:46:05,968 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:46:38] 2025-11-27 22:46:06,077 | INFO     | cat /etc/os-release:
[2025-11-27 17:46:38] NAME="CentOS Linux"
[2025-11-27 17:46:38] VERSION="7 (Core)"
[2025-11-27 17:46:38] ID="centos"
[2025-11-27 17:46:38] ID_LIKE="rhel fedora"
[2025-11-27 17:46:38] VERSION_ID="7"
[2025-11-27 17:46:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:46:38] ANSI_COLOR="0;31"
[2025-11-27 17:46:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:46:38] HOME_URL="https://www.centos.org/"
[2025-11-27 17:46:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:46:38] 
[2025-11-27 17:46:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:46:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:46:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:46:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:46:38] 
[2025-11-27 17:46:38] 2025-11-27 22:46:06,077 | INFO     | ***************************************
[2025-11-27 17:46:38] 2025-11-27 22:46:06,581 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 17:46:38] 2025-11-27 22:46:06,637 | INFO     | sufficient remaining disk space (84462796800 B)
[2025-11-27 17:46:38] 2025-11-27 22:46:06,637 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:46:38] 2025-11-27 22:46:06,638 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:46:38] 2025-11-27 22:46:06,638 | INFO     | update_server=False
[2025-11-27 17:46:38] 2025-11-27 22:46:06,638 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:46:38] 2025-11-27 22:46:06,638 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:46:38] 2025-11-27 22:46:06,638 | INFO     | aborting loop
[2025-11-27 17:46:38] 2025-11-27 22:46:06,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:46:38] 2025-11-27 22:46:06,691 | INFO     | all payload control threads have been joined
[2025-11-27 17:46:38] 2025-11-27 22:46:06,720 | INFO     | all data control threads have been joined
[2025-11-27 17:46:38] 2025-11-27 22:46:06,826 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:46:38] 2025-11-27 22:46:07,646 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:07,646 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:07,697 | INFO     | [payload] control thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:07,726 | INFO     | [data] control thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:07,863 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:08,077 | INFO     | all job control threads have been joined
[2025-11-27 17:46:38] 2025-11-27 22:46:08,115 | INFO     | [job] validate thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:08,120 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:08,138 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:08,343 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:08,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:46:38] 2025-11-27 22:46:08,647 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:08,763 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:08,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:09,084 | INFO     | [job] control thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:09,203 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:09,412 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:10,835 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:46:38] 2025-11-27 22:46:30,478 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:46:38] 2025-11-27 22:46:31,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692365588288)>', '<ExcThread(monitor, started 140692013688576)>']
[2025-11-27 17:46:38] 2025-11-27 22:46:35,852 | INFO     | PID=524567 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 17:46:38] 2025-11-27 22:46:35,852 | INFO     | .. there are 113 such processes running
[2025-11-27 17:46:38] 2025-11-27 22:46:35,853 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:46:38] 2025-11-27 22:46:35,853 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:46:38] 2025-11-27 22:46:35,853 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:46:38] 2025-11-27 22:46:35,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:46:38] 2025-11-27 22:46:35,853 | INFO     | [monitor] control thread has ended
[2025-11-27 17:46:38] 2025-11-27 22:46:36,488 | INFO     | all workflow threads have been joined
[2025-11-27 17:46:38] 2025-11-27 22:46:36,488 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:46:38] 2025-11-27 22:46:36,488 | INFO     | traces error code: 0
[2025-11-27 17:46:38] 2025-11-27 22:46:36,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:46:38] 2025-11-27 22:46:36,637 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:46:38] 2025-11-27 22:46:36,649 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:46:38] 2025-11-27 22:46:36,682 [wrapper] pilotpid: 524567
[2025-11-27 17:46:38] 2025-11-27 22:46:36,699 [wrapper] Pilot exit status: 0
[2025-11-27 17:46:38] 2025-11-27 22:46:36,882 [wrapper] pandaids: 6898377072
[2025-11-27 17:46:38] 2025-11-27 22:46:37,355 [wrapper] cleanup supervisor_pilot 1006624 524568
[2025-11-27 17:46:38] 2025-11-27 22:46:37,480 [wrapper] Test setup, not cleaning
[2025-11-27 17:46:38] 2025-11-27 22:46:37,528 [wrapper] apfmon messages muted
[2025-11-27 17:46:38] 2025-11-27 22:46:37,563 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:46:38] 2025-11-27 22:46:37,594 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:46:38]  *** Error codes and diagnostics ***
[2025-11-27 17:46:38]     "exeErrorCode": 0,
[2025-11-27 17:46:38]     "exeErrorDiag": "",
[2025-11-27 17:46:38]     "pilotErrorCode": 0,
[2025-11-27 17:46:38]     "pilotErrorDiag": "",
[2025-11-27 17:46:38]  *** Listing of results directory ***
[2025-11-27 17:46:38] total 1326256
[2025-11-27 17:46:38] -rwx------. 1 boincer umatlas     36292 Nov 26 11:12 runpilot2-wrapper.sh
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:12 queuedata.json
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas       100 Nov 27 09:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:46:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 09:14 run_atlas
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas       105 Nov 27 09:14 job.xml
[2025-11-27 17:46:38] -rw-r--r--. 2 boincer umatlas 412522581 Nov 27 09:14 EVNT.47483658._002567.pool.root.1
[2025-11-27 17:46:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 09:14 start_atlas.sh
[2025-11-27 17:46:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 09:14 shared
[2025-11-27 17:46:38] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 09:14 input.tar.gz
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas         0 Nov 27 09:14 boinc_lockfile
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 09:14 pandaJob.out
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas        57 Nov 27 09:14 setup.sh.local
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas    991588 Nov 27 09:15 agis_schedconf.cvmfs.json
[2025-11-27 17:46:38] drwx------. 5 boincer umatlas      4096 Nov 27 09:15 pilot3
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:27 boinc_task_state.xml
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 17:36 init_data.xml
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas 930754784 Nov 27 17:44 HITS.47556161._005494.pool.root.1
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas      1052 Nov 27 17:45 memory_monitor_summary.json
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas   1737062 Nov 27 17:45 log.47556161._005494.job.log.tgz.1
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas      8592 Nov 27 17:45 heartbeat.json
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:46 wrapper_checkpoint.txt
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas        95 Nov 27 17:46 pilot_heartbeat.json
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas      4825 Nov 27 17:46 pilotlog.txt
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas   3703069 Nov 27 17:46 log.47556161._005494.job.log.1
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas       353 Nov 27 17:46 output.list
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:46 runtime_log
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas   5457920 Nov 27 17:46 result.tar.gz
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas      9351 Nov 27 17:46 runtime_log.err
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas       658 Nov 27 17:46 D9CNDmyIXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu7MKDmbgXKun.diag
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:46 boinc_mmap_file
[2025-11-27 17:46:38] -rw-r--r--. 1 boincer umatlas     21856 Nov 27 17:46 stderr.txt
[2025-11-27 17:46:38] HITS file was successfully produced:
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas 930754784 Nov 27 17:44 shared/HITS.pool.root.1
[2025-11-27 17:46:38]  *** Contents of shared directory: ***
[2025-11-27 17:46:38] total 1317736
[2025-11-27 17:46:38] -rw-r--r--. 2 boincer umatlas 412522581 Nov 27 09:14 ATLAS.root_0
[2025-11-27 17:46:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 09:14 start_atlas.sh
[2025-11-27 17:46:38] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 09:14 input.tar.gz
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas 930754784 Nov 27 17:44 HITS.pool.root.1
[2025-11-27 17:46:38] -rw-------. 1 boincer umatlas   5457920 Nov 27 17:46 result.tar.gz
17:47:01 (512541): run_atlas exited; CPU time 136369.537660
17:47:01 (512541): called boinc_finish(0)

</stderr_txt>
]]>

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