Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:53:46 (3310240): wrapper (7.7.26015): starting
08:53:46 (3310240): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 08:53:46] Arguments: --nthreads 9
[2025-11-27 08:53:46] Threads: 9
[2025-11-27 08:53:46] Checking for CVMFS
[2025-11-27 08:53:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:53:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:53:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:53:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:53:48] 2.13.3.0 14106 31526 292852 153366 3 727 27623391 40960001 61945 16776704 0 398554000 99.750 262242829 47226 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 08:53:48] CVMFS is ok
[2025-11-27 08:53:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:53:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:53:48] Further information can be found at the LHC@home message board.
[2025-11-27 08:53:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:53:48] Checking for apptainer binary...
[2025-11-27 08:53:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:53:48] Running /usr/bin/apptainer --version
[2025-11-27 08:53:48] apptainer version 1.4.4-1.el9
[2025-11-27 08:53:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:53:48] c8-7-5.aglt2.org
[2025-11-27 08:53:48] apptainer works
[2025-11-27 08:53:48] Set ATHENA_PROC_NUMBER=9
[2025-11-27 08:53:48] Set ATHENA_CORE_NUMBER=9
[2025-11-27 08:53:48] Starting ATLAS job with PandaID=6897998658
[2025-11-27 08:53:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:45:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:45:57] 2025-11-28 00:45:07,180 | INFO     | time since job start (39043s) is within the limit (172800.0s)
[2025-11-27 19:45:57] 2025-11-28 00:45:08,958 | INFO     | monitor loop #2154: job 0:6897998658 is in state 'finished'
[2025-11-27 19:45:57] 2025-11-28 00:45:08,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:45:57] 2025-11-28 00:45:09,190 | INFO     | time since job start (39045s) is within the limit (172800.0s)
[2025-11-27 19:45:57] 2025-11-28 00:45:11,197 | INFO     | time since job start (39047s) is within the limit (172800.0s)
[2025-11-27 19:45:57] 2025-11-28 00:45:11,463 | INFO     | monitor loop #2155: job 0:6897998658 is in state 'finished'
[2025-11-27 19:45:57] 2025-11-28 00:45:11,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:45:57] 2025-11-28 00:45:13,204 | INFO     | time since job start (39049s) is within the limit (172800.0s)
[2025-11-27 19:45:57] 2025-11-28 00:45:13,971 | INFO     | monitor loop #2156: job 0:6897998658 is in state 'finished'
[2025-11-27 19:45:57] 2025-11-28 00:45:13,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:45:57] 2025-11-28 00:45:15,259 | INFO     | time since job start (39051s) is within the limit (172800.0s)
[2025-11-27 19:45:57] 2025-11-28 00:45:16,496 | INFO     | monitor loop #2157: job 0:6897998658 is in state 'finished'
[2025-11-27 19:45:57] 2025-11-28 00:45:16,496 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:45:57] 2025-11-28 00:45:17,305 | INFO     | time since job start (39053s) is within the limit (172800.0s)
[2025-11-27 19:45:57] 2025-11-28 00:45:19,025 | INFO     | monitor loop #2158: job 0:6897998658 is in state 'finished'
[2025-11-27 19:45:57] 2025-11-28 00:45:19,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:45:57] 2025-11-28 00:45:19,325 | INFO     | time since job start (39055s) is within the limit (172800.0s)
[2025-11-27 19:45:57] 2025-11-28 00:45:20,874 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:45:57] 2025-11-28 00:45:20,893 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9888046875
[2025-11-27 19:45:57] 2025-11-28 00:45:20,906 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897998658/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:45:57] 2025-11-28 00:45:20,906 | INFO     | extracted standard info from prmon json
[2025-11-27 19:45:57] 2025-11-28 00:45:20,906 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:45:57] 2025-11-28 00:45:20,906 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:45:57] 2025-11-28 00:45:20,912 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:45:57] 2025-11-28 00:45:20,912 | INFO     | sum of square deviations: 80527004671.42896
[2025-11-27 19:45:57] 2025-11-28 00:45:20,917 | INFO     | sum of deviations: 682759589023.4016
[2025-11-27 19:45:57] 2025-11-28 00:45:20,917 | INFO     | mean x: 1764271180.0846395
[2025-11-27 19:45:57] 2025-11-28 00:45:20,917 | INFO     | mean y: 2935158.918495298
[2025-11-27 19:45:57] 2025-11-28 00:45:20,917 | INFO     | intersect: -14955687364.73541
[2025-11-27 19:45:57] 2025-11-28 00:45:20,918 | INFO     | chi2: 21.88261470271951
[2025-11-27 19:45:57] 2025-11-28 00:45:20,918 | INFO     | sum of square deviations: 78648849886.27495
[2025-11-27 19:45:57] 2025-11-28 00:45:20,923 | INFO     | sum of deviations: 906204925469.6747
[2025-11-27 19:45:57] 2025-11-28 00:45:20,923 | INFO     | mean x: 1764271027.5971563
[2025-11-27 19:45:57] 2025-11-28 00:45:20,923 | INFO     | mean y: 2953306.4849921013
[2025-11-27 19:45:57] 2025-11-28 00:45:20,923 | INFO     | intersect: -20325266335.42732
[2025-11-27 19:45:57] 2025-11-28 00:45:20,923 | INFO     | chi2: 18.377138767330138
[2025-11-27 19:45:57] 2025-11-28 00:45:20,923 | INFO     | current chi2=18.377138767330138 (change=16.019456463553794 %)
[2025-11-27 19:45:57] 2025-11-28 00:45:20,923 | INFO     | right removable region: 632
[2025-11-27 19:45:57] 2025-11-28 00:45:20,924 | INFO     | sum of square deviations: 78648233176.27496
[2025-11-27 19:45:57] 2025-11-28 00:45:20,928 | INFO     | sum of deviations: 419170734583.8546
[2025-11-27 19:45:57] 2025-11-28 00:45:20,929 | INFO     | mean x: 1764271332.5971563
[2025-11-27 19:45:57] 2025-11-28 00:45:20,929 | INFO     | mean y: 2956551.4739336492
[2025-11-27 19:45:57] 2025-11-28 00:45:20,929 | INFO     | intersect: -9400063460.844322
[2025-11-27 19:45:57] 2025-11-28 00:45:20,929 | INFO     | chi2: 17.563041950673878
[2025-11-27 19:45:57] 2025-11-28 00:45:20,929 | INFO     | current chi2=17.563041950673878 (change=19.7397468754445 %)
[2025-11-27 19:45:57] 2025-11-28 00:45:20,929 | INFO     | left removable region: 10
[2025-11-27 19:45:57] 2025-11-28 00:45:20,929 | INFO     | sum of square deviations: 74618985782.21863
[2025-11-27 19:45:57] 2025-11-28 00:45:20,934 | INFO     | sum of deviations: 451145412364.53046
[2025-11-27 19:45:57] 2025-11-28 00:45:20,934 | INFO     | mean x: 1764271302.125402
[2025-11-27 19:45:57] 2025-11-28 00:45:20,934 | INFO     | mean y: 3000017.377813505
[2025-11-27 19:45:57] 2025-11-28 00:45:20,934 | INFO     | intersect: -10663761206.67974
[2025-11-27 19:45:57] 2025-11-28 00:45:20,939 | INFO     | chi2: 9.42033818079849
[2025-11-27 19:45:57] 2025-11-28 00:45:20,939 | INFO     | current memory leak: 6.05 B/s (using 622 data points, chi2=9.42)
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | could have reported an average CPU frequency of 3797 MHz (25 samples)
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | ..............................
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . Timing measurements:
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . get job = 0 s
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . initial setup = 2 s
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . payload setup = 19 s
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . stage-in = 0 s
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . payload execution = 38944 s
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . stage-out = 5 s
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | . log creation = 2 s
[2025-11-27 19:45:57] 2025-11-28 00:45:20,940 | INFO     | ..............................
[2025-11-27 19:45:57] 2025-11-28 00:45:21,066 | INFO     | 
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | job summary report
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | --------------------------------------------------
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | PanDA job id: 6897998658
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | task id: 47556161
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | errors: (none)
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | pilot state: finished 
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | transexitcode: 0
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | exeerrorcode: 0
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | exeerrordiag: 
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | exitcode: 0
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | exitmsg: OK
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | cpuconsumptiontime: 134532 s
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | nevents: 1000
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | neventsw: 0
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | pid: 3327573
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | pgrp: 3327573
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | corecount: 9
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | event service: False
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | sizes: {0: 2284031, 1: 2284286, 12: 2284286, 15: 2284576, 22: 2284604, 38967: 2327230, 38973: 2336252, 38977: 2336308, 39021: 2336618}
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | --------------------------------------------------
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | 
[2025-11-27 19:45:57] 2025-11-28 00:45:21,067 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,124 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | job 6897998658 has completed (purged errors)
[2025-11-27 19:45:57] 2025-11-28 00:45:21,125 | INFO     | overall cleanup function is called
[2025-11-27 19:45:57] 2025-11-28 00:45:22,149 | INFO     | --- collectZombieJob: --- 10, [3327573]
[2025-11-27 19:45:57] 2025-11-28 00:45:22,149 | INFO     | zombie collector waiting for pid 3327573
[2025-11-27 19:45:57] 2025-11-28 00:45:22,149 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:45:57] 2025-11-28 00:45:22,149 | INFO     | collected zombie processes
[2025-11-27 19:45:57] 2025-11-28 00:45:22,149 | INFO     | will attempt to kill all subprocesses of pid=3327573
[2025-11-27 19:45:57] 2025-11-28 00:45:24,138 | INFO     | process IDs to be killed: [3327573] (in reverse order)
[2025-11-27 19:45:57] 2025-11-28 00:45:24,376 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:45:57] 2025-11-28 00:45:24,376 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:45:57] 2025-11-28 00:45:24,448 | INFO     | did not find any defunct processes belonging to 3327573
[2025-11-27 19:45:57] 2025-11-28 00:45:24,519 | INFO     | did not find any defunct processes belonging to 3327573
[2025-11-27 19:45:57] 2025-11-28 00:45:24,523 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:45:57] 2025-11-28 00:45:24,524 | INFO     | ready for new job
[2025-11-27 19:45:57] 2025-11-28 00:45:24,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:45:57] 2025-11-28 00:45:24,541 | INFO     | ***************************************
[2025-11-27 19:45:57] 2025-11-28 00:45:24,541 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:45:57] 2025-11-28 00:45:24,542 | INFO     | ***************************************
[2025-11-27 19:45:57] 2025-11-28 00:45:24,542 | INFO     | 
[2025-11-27 19:45:57] 2025-11-28 00:45:24,559 | INFO     | architecture information:
[2025-11-27 19:45:57] 2025-11-28 00:45:24,569 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:45:57] 2025-11-28 00:45:24,662 | INFO     | cat /etc/os-release:
[2025-11-27 19:45:57] NAME="CentOS Linux"
[2025-11-27 19:45:57] VERSION="7 (Core)"
[2025-11-27 19:45:57] ID="centos"
[2025-11-27 19:45:57] ID_LIKE="rhel fedora"
[2025-11-27 19:45:57] VERSION_ID="7"
[2025-11-27 19:45:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:45:57] ANSI_COLOR="0;31"
[2025-11-27 19:45:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:45:57] HOME_URL="https://www.centos.org/"
[2025-11-27 19:45:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:45:57] 
[2025-11-27 19:45:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:45:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:45:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:45:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:45:57] 
[2025-11-27 19:45:57] 2025-11-28 00:45:24,662 | INFO     | ***************************************
[2025-11-27 19:45:57] 2025-11-28 00:45:25,170 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 19:45:57] 2025-11-28 00:45:25,214 | INFO     | sufficient remaining disk space (161329709056 B)
[2025-11-27 19:45:57] 2025-11-28 00:45:25,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:45:57] 2025-11-28 00:45:25,214 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:45:57] 2025-11-28 00:45:25,214 | INFO     | update_server=False
[2025-11-27 19:45:57] 2025-11-28 00:45:25,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:45:57] 2025-11-28 00:45:25,215 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:45:57] 2025-11-28 00:45:25,215 | INFO     | aborting loop
[2025-11-27 19:45:57] 2025-11-28 00:45:25,271 | INFO     | all payload control threads have been joined
[2025-11-27 19:45:57] 2025-11-28 00:45:25,576 | INFO     | all job control threads have been joined
[2025-11-27 19:45:57] 2025-11-28 00:45:25,669 | INFO     | all data control threads have been joined
[2025-11-27 19:45:57] 2025-11-28 00:45:26,105 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:45:57] 2025-11-28 00:45:26,223 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,223 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,232 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,278 | INFO     | [payload] control thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,433 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,433 | INFO     | [job] validate thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:45:57] 2025-11-28 00:45:26,584 | INFO     | [job] control thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,675 | INFO     | [data] control thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:26,761 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:27,051 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:27,069 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:27,111 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:27,222 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:27,631 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:28,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:45:57] 2025-11-28 00:45:28,580 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:32,069 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:45:57] 2025-11-28 00:45:32,303 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:45:57] 2025-11-28 00:45:33,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497204414272)>', '<ExcThread(monitor, started 140496466851584)>']
[2025-11-27 19:45:57] 2025-11-28 00:45:38,312 | INFO     | all workflow threads have been joined
[2025-11-27 19:45:57] 2025-11-28 00:45:38,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:45:57] 2025-11-28 00:45:38,312 | INFO     | traces error code: 0
[2025-11-27 19:45:57] 2025-11-28 00:45:38,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:45:57] 2025-11-28 00:45:54,868 | INFO     | PID=3315237 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:45:57] 2025-11-28 00:45:54,868 | INFO     | .. there are 98 such processes running
[2025-11-27 19:45:57] 2025-11-28 00:45:54,868 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:45:57] 2025-11-28 00:45:54,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:45:57] 2025-11-28 00:45:54,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:45:57] 2025-11-28 00:45:54,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:45:57] 2025-11-28 00:45:54,868 | INFO     | [monitor] control thread has ended
[2025-11-27 19:45:57] 2025-11-28 00:45:55,047 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:45:57] 2025-11-28 00:45:55,084 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:45:57] 2025-11-28 00:45:55,135 [wrapper] pilotpid: 3315237
[2025-11-27 19:45:57] 2025-11-28 00:45:55,159 [wrapper] Pilot exit status: 0
[2025-11-27 19:45:57] 2025-11-28 00:45:55,315 [wrapper] pandaids: 6897998658
[2025-11-27 19:45:57] 2025-11-28 00:45:56,094 [wrapper] cleanup supervisor_pilot  160560 3315238
[2025-11-27 19:45:57] 2025-11-28 00:45:56,158 [wrapper] Test setup, not cleaning
[2025-11-27 19:45:57] 2025-11-28 00:45:56,212 [wrapper] apfmon messages muted
[2025-11-27 19:45:57] 2025-11-28 00:45:56,242 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:45:57] 2025-11-28 00:45:56,293 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:45:57]  *** Error codes and diagnostics ***
[2025-11-27 19:45:57]     "exeErrorCode": 0,
[2025-11-27 19:45:57]     "exeErrorDiag": "",
[2025-11-27 19:45:57]     "pilotErrorCode": 0,
[2025-11-27 19:45:57]     "pilotErrorDiag": "",
[2025-11-27 19:45:57]  *** Listing of results directory ***
[2025-11-27 19:45:57] total 1307224
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:21 queuedata.json
[2025-11-27 19:45:57] -rwx------. 1 boincer umatlas     36292 Nov 25 21:24 runpilot2-wrapper.sh
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:45:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:53 run_atlas
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:53 job.xml
[2025-11-27 19:45:57] -rw-r--r--. 2 boincer umatlas 410607258 Nov 27 08:53 EVNT.47483658._002378.pool.root.1
[2025-11-27 19:45:57] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 08:53 input.tar.gz
[2025-11-27 19:45:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:53 start_atlas.sh
[2025-11-27 19:45:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:53 shared
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:53 boinc_lockfile
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas      2782 Nov 27 08:53 pandaJob.out
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas        57 Nov 27 08:53 setup.sh.local
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas    991588 Nov 27 08:54 agis_schedconf.cvmfs.json
[2025-11-27 19:45:57] drwx------. 5 boincer umatlas      4096 Nov 27 08:54 pilot3
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas       532 Nov 27 19:25 boinc_task_state.xml
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 19:37 init_data.xml
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas 910734738 Nov 27 19:43 HITS.47556161._003601.pool.root.1
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas      1059 Nov 27 19:44 memory_monitor_summary.json
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas   1948166 Nov 27 19:44 log.47556161._003601.job.log.tgz.1
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas        95 Nov 27 19:45 pilot_heartbeat.json
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas      8588 Nov 27 19:45 heartbeat.json
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:45 wrapper_checkpoint.txt
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas       823 Nov 27 19:45 pilotlog.txt
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas   4719549 Nov 27 19:45 log.47556161._003601.job.log.1
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas       353 Nov 27 19:45 output.list
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:45 runtime_log
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas   6686720 Nov 27 19:45 result.tar.gz
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas       660 Nov 27 19:45 ZUGLDm0NKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVjMKDmJ59CRm.diag
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 19:45 runtime_log.err
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:45 boinc_mmap_file
[2025-11-27 19:45:57] -rw-r--r--. 1 boincer umatlas     21779 Nov 27 19:45 stderr.txt
[2025-11-27 19:45:57] HITS file was successfully produced:
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas 910734738 Nov 27 19:43 shared/HITS.pool.root.1
[2025-11-27 19:45:57]  *** Contents of shared directory: ***
[2025-11-27 19:45:57] total 1297512
[2025-11-27 19:45:57] -rw-r--r--. 2 boincer umatlas 410607258 Nov 27 08:53 ATLAS.root_0
[2025-11-27 19:45:57] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 08:53 input.tar.gz
[2025-11-27 19:45:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:53 start_atlas.sh
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas 910734738 Nov 27 19:43 HITS.pool.root.1
[2025-11-27 19:45:57] -rw-------. 1 boincer umatlas   6686720 Nov 27 19:45 result.tar.gz
19:45:59 (3310240): run_atlas exited; CPU time 135294.766274
19:45:59 (3310240): called boinc_finish(0)

</stderr_txt>
]]>

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