Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:49:36 (3763637): wrapper (7.7.26015): starting
13:49:36 (3763637): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 13:49:36] Arguments: --nthreads 8
[2025-11-27 13:49:36] Threads: 8
[2025-11-27 13:49:36] Checking for CVMFS
[2025-11-27 13:49:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 13:49:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 13:49:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 13:49:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 13:49:38] 2.13.3.0 11285 31826 333564 153379 1 509 29287098 32935936 47668 16776704 0 235663657 99.613 246278376 37665 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 13:49:38] CVMFS is ok
[2025-11-27 13:49:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 13:49:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 13:49:38] Further information can be found at the LHC@home message board.
[2025-11-27 13:49:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 13:49:38] Checking for apptainer binary...
[2025-11-27 13:49:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 13:49:38] Running /usr/bin/apptainer --version
[2025-11-27 13:49:38] apptainer version 1.4.4-1.el9
[2025-11-27 13:49:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 13:49:38] c7-3-29.aglt2.org
[2025-11-27 13:49:38] apptainer works
[2025-11-27 13:49:38] Set ATHENA_PROC_NUMBER=8
[2025-11-27 13:49:38] Set ATHENA_CORE_NUMBER=8
[2025-11-27 13:49:38] Starting ATLAS job with PandaID=6898376986
[2025-11-27 13:49:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:18:40]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:18:40] 2025-11-28 04:17:34,696 | INFO     | time since job start (34026s) is within the limit (172800.0s)
[2025-11-27 23:18:40] 2025-11-28 04:17:36,703 | INFO     | time since job start (34028s) is within the limit (172800.0s)
[2025-11-27 23:18:40] 2025-11-28 04:17:36,861 | INFO     | monitor loop #1748: job 0:6898376986 is in state 'finished'
[2025-11-27 23:18:40] 2025-11-28 04:17:36,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:18:40] 2025-11-28 04:17:38,710 | INFO     | time since job start (34030s) is within the limit (172800.0s)
[2025-11-27 23:18:40] 2025-11-28 04:17:39,370 | INFO     | monitor loop #1749: job 0:6898376986 is in state 'finished'
[2025-11-27 23:18:40] 2025-11-28 04:17:39,371 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:18:40] 2025-11-28 04:17:40,717 | INFO     | time since job start (34032s) is within the limit (172800.0s)
[2025-11-27 23:18:40] 2025-11-28 04:17:41,878 | INFO     | monitor loop #1750: job 0:6898376986 is in state 'finished'
[2025-11-27 23:18:40] 2025-11-28 04:17:41,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:18:40] 2025-11-28 04:17:42,749 | INFO     | time since job start (34034s) is within the limit (172800.0s)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,082 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 23:18:40] 2025-11-28 04:17:44,091 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3108.5010520833334
[2025-11-27 23:18:40] 2025-11-28 04:17:44,320 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6898376986/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,384 | INFO     | monitor loop #1751: job 0:6898376986 is in state 'finished'
[2025-11-27 23:18:40] 2025-11-28 04:17:44,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,395 | INFO     | extracted standard info from prmon json
[2025-11-27 23:18:40] 2025-11-28 04:17:44,395 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:18:40] 2025-11-28 04:17:44,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:18:40] 2025-11-28 04:17:44,449 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:18:40] 2025-11-28 04:17:44,450 | INFO     | sum of square deviations: 53297309921.647514
[2025-11-27 23:18:40] 2025-11-28 04:17:44,456 | INFO     | sum of deviations: 402637023464.7346
[2025-11-27 23:18:40] 2025-11-28 04:17:44,456 | INFO     | mean x: 1764286473.0251799
[2025-11-27 23:18:40] 2025-11-28 04:17:44,456 | INFO     | mean y: 3804862.161870504
[2025-11-27 23:18:40] 2025-11-28 04:17:44,456 | INFO     | intersect: -13324579911.521177
[2025-11-27 23:18:40] 2025-11-28 04:17:44,457 | INFO     | chi2: 21.712394153915977
[2025-11-27 23:18:40] 2025-11-28 04:17:44,458 | INFO     | sum of square deviations: 51872423425.25597
[2025-11-27 23:18:40] 2025-11-28 04:17:44,464 | INFO     | sum of deviations: 680532292275.2736
[2025-11-27 23:18:40] 2025-11-28 04:17:44,465 | INFO     | mean x: 1764286320.5299456
[2025-11-27 23:18:40] 2025-11-28 04:17:44,465 | INFO     | mean y: 3834592.4682395644
[2025-11-27 23:18:40] 2025-11-28 04:17:44,465 | INFO     | intersect: -23142448820.918037
[2025-11-27 23:18:40] 2025-11-28 04:17:44,465 | INFO     | chi2: 17.47350539389147
[2025-11-27 23:18:40] 2025-11-28 04:17:44,465 | INFO     | current chi2=17.47350539389147 (change=19.52289890269882 %)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,465 | INFO     | right removable region: 550
[2025-11-27 23:18:40] 2025-11-28 04:17:44,466 | INFO     | sum of square deviations: 51872245305.25602
[2025-11-27 23:18:40] 2025-11-28 04:17:44,472 | INFO     | sum of deviations: 102476794161.12314
[2025-11-27 23:18:40] 2025-11-28 04:17:44,472 | INFO     | mean x: 1764286625.5299456
[2025-11-27 23:18:40] 2025-11-28 04:17:44,472 | INFO     | mean y: 3836977.780399274
[2025-11-27 23:18:40] 2025-11-28 04:17:44,472 | INFO     | intersect: -3481619190.5751114
[2025-11-27 23:18:40] 2025-11-28 04:17:44,473 | INFO     | chi2: 17.373066537701
[2025-11-27 23:18:40] 2025-11-28 04:17:44,473 | INFO     | current chi2=17.373066537701 (change=19.98548656336155 %)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,473 | INFO     | left removable region: 10
[2025-11-27 23:18:40] 2025-11-28 04:17:44,474 | INFO     | sum of square deviations: 48827267369.25919
[2025-11-27 23:18:40] 2025-11-28 04:17:44,480 | INFO     | sum of deviations: 209134285311.55493
[2025-11-27 23:18:40] 2025-11-28 04:17:44,480 | INFO     | mean x: 1764286595.0370371
[2025-11-27 23:18:40] 2025-11-28 04:17:44,480 | INFO     | mean y: 3898822.322222222
[2025-11-27 23:18:40] 2025-11-28 04:17:44,480 | INFO     | intersect: -7552797180.0865965
[2025-11-27 23:18:40] 2025-11-28 04:17:44,481 | INFO     | chi2: 9.622186953029038
[2025-11-27 23:18:40] 2025-11-28 04:17:44,481 | INFO     | current memory leak: 4.28 B/s (using 540 data points, chi2=9.62)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | could have reported an average CPU frequency of 3172 MHz (22 samples)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | ..............................
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . Timing measurements:
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . get job = 0 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . initial setup = 5 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . payload setup = 39 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . stage-in = 0 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . payload execution = 33900 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . stage-out = 13 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | . log creation = 1 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,482 | INFO     | ..............................
[2025-11-27 23:18:40] 2025-11-28 04:17:44,924 | INFO     | 
[2025-11-27 23:18:40] 2025-11-28 04:17:44,929 | INFO     | job summary report
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | --------------------------------------------------
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | PanDA job id: 6898376986
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | task id: 47556161
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | errors: (none)
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | pilot state: finished 
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | transexitcode: 0
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | exeerrorcode: 0
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | exeerrordiag: 
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | exitcode: 0
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | exitmsg: OK
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | cpuconsumptiontime: 193978 s
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | nevents: 1000
[2025-11-27 23:18:40] 2025-11-28 04:17:44,930 | INFO     | neventsw: 0
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | pid: 3779863
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | pgrp: 3779863
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | corecount: 8
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | event service: False
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | sizes: {0: 2284144, 1: 2284343, 11: 2284343, 22: 2284371, 26: 2284661, 33: 2284689, 33942: 2324640, 33956: 2333634, 33958: 2333690, 33979: 2333936}
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | --------------------------------------------------
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | 
[2025-11-27 23:18:40] 2025-11-28 04:17:44,931 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 23:18:40] 2025-11-28 04:17:45,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:18:40] 2025-11-28 04:17:45,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,188 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:18:40] 2025-11-28 04:17:45,188 | INFO     | job 6898376986 has completed (purged errors)
[2025-11-27 23:18:40] 2025-11-28 04:17:45,188 | INFO     | overall cleanup function is called
[2025-11-27 23:18:40] 2025-11-28 04:17:46,068 | INFO     | PID=3771225 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:18:40] 2025-11-28 04:17:46,068 | INFO     | .. there are 74 such processes running
[2025-11-27 23:18:40] 2025-11-28 04:17:46,737 | INFO     | --- collectZombieJob: --- 10, [3779863]
[2025-11-27 23:18:40] 2025-11-28 04:17:46,737 | INFO     | zombie collector waiting for pid 3779863
[2025-11-27 23:18:40] 2025-11-28 04:17:46,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:18:40] 2025-11-28 04:17:46,738 | INFO     | collected zombie processes
[2025-11-27 23:18:40] 2025-11-28 04:17:46,738 | INFO     | will attempt to kill all subprocesses of pid=3779863
[2025-11-27 23:18:40] 2025-11-28 04:17:52,880 | INFO     | process IDs to be killed: [3779863] (in reverse order)
[2025-11-27 23:18:40] 2025-11-28 04:17:53,262 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:18:40] 2025-11-28 04:17:53,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:18:40] 2025-11-28 04:17:53,297 | INFO     | did not find any defunct processes belonging to 3779863
[2025-11-27 23:18:40] 2025-11-28 04:17:53,331 | INFO     | did not find any defunct processes belonging to 3779863
[2025-11-27 23:18:40] 2025-11-28 04:17:53,367 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:18:40] 2025-11-28 04:17:53,394 | INFO     | ready for new job
[2025-11-27 23:18:40] 2025-11-28 04:17:53,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:18:40] 2025-11-28 04:17:53,398 | INFO     | ***************************************
[2025-11-27 23:18:40] 2025-11-28 04:17:53,398 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:18:40] 2025-11-28 04:17:53,398 | INFO     | ***************************************
[2025-11-27 23:18:40] 2025-11-28 04:17:53,398 | INFO     | 
[2025-11-27 23:18:40] 2025-11-28 04:17:53,486 | INFO     | architecture information:
[2025-11-27 23:18:40] 2025-11-28 04:17:53,679 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:18:40] 2025-11-28 04:17:53,832 | INFO     | cat /etc/os-release:
[2025-11-27 23:18:40] NAME="CentOS Linux"
[2025-11-27 23:18:40] VERSION="7 (Core)"
[2025-11-27 23:18:40] ID="centos"
[2025-11-27 23:18:40] ID_LIKE="rhel fedora"
[2025-11-27 23:18:40] VERSION_ID="7"
[2025-11-27 23:18:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:18:40] ANSI_COLOR="0;31"
[2025-11-27 23:18:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:18:40] HOME_URL="https://www.centos.org/"
[2025-11-27 23:18:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:18:40] 
[2025-11-27 23:18:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:18:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:18:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:18:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:18:40] 
[2025-11-27 23:18:40] 2025-11-28 04:17:53,832 | INFO     | ***************************************
[2025-11-27 23:18:40] 2025-11-28 04:17:54,350 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 23:18:40] 2025-11-28 04:17:54,493 | INFO     | sufficient remaining disk space (67976036352 B)
[2025-11-27 23:18:40] 2025-11-28 04:17:54,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:18:40] 2025-11-28 04:17:54,494 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:18:40] 2025-11-28 04:17:54,494 | INFO     | update_server=False
[2025-11-27 23:18:40] 2025-11-28 04:17:54,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:18:40] 2025-11-28 04:17:54,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:18:40] 2025-11-28 04:17:54,511 | INFO     | all data control threads have been joined
[2025-11-27 23:18:40] 2025-11-28 04:17:54,797 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 23:18:40] 2025-11-28 04:17:54,798 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 23:18:40] 2025-11-28 04:17:54,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:18:40] 2025-11-28 04:17:54,798 | INFO     | will abort loop
[2025-11-27 23:18:40] 2025-11-28 04:17:55,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:18:40] 2025-11-28 04:17:55,490 | INFO     | all payload control threads have been joined
[2025-11-27 23:18:40] 2025-11-28 04:17:55,491 | INFO     | all job control threads have been joined
[2025-11-27 23:18:40] 2025-11-28 04:17:55,500 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:55,506 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:55,517 | INFO     | [data] control thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:55,803 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:55,813 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:55,829 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:55,835 | INFO     | [job] validate thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:56,313 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:56,496 | INFO     | [payload] control thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:56,497 | INFO     | [job] control thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:56,877 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:56,878 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:56,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:18:40] 2025-11-28 04:17:56,955 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:56,960 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:17:57,019 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:18:00,972 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:18:40] 2025-11-28 04:18:19,220 | INFO     | PID=3771225 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 23:18:40] 2025-11-28 04:18:19,220 | INFO     | .. there are 74 such processes running
[2025-11-27 23:18:40] 2025-11-28 04:18:19,220 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:18:40] 2025-11-28 04:18:19,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:18:40] 2025-11-28 04:18:19,221 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:18:40] 2025-11-28 04:18:31,922 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:18:40] 2025-11-28 04:18:32,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140044106032960)>', '<ExcThread(monitor, started 140043750455040)>']
[2025-11-27 23:18:40] 2025-11-28 04:18:33,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:18:40] 2025-11-28 04:18:33,304 | INFO     | [monitor] control thread has ended
[2025-11-27 23:18:40] 2025-11-28 04:18:37,612 | INFO     | all workflow threads have been joined
[2025-11-27 23:18:40] 2025-11-28 04:18:37,613 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:18:40] 2025-11-28 04:18:37,613 | INFO     | traces error code: 0
[2025-11-27 23:18:40] 2025-11-28 04:18:37,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:18:40] 2025-11-28 04:18:39,545 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:18:40] 2025-11-28 04:18:39,552 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:18:40] 2025-11-28 04:18:39,556 [wrapper] pilotpid: 3771225
[2025-11-27 23:18:40] 2025-11-28 04:18:39,562 [wrapper] Pilot exit status: 0
[2025-11-27 23:18:40] 2025-11-28 04:18:39,612 [wrapper] pandaids: 6898376986
[2025-11-27 23:18:40] 2025-11-28 04:18:39,842 [wrapper] cleanup supervisor_pilot 2717910 3771226
[2025-11-27 23:18:40] 2025-11-28 04:18:39,860 [wrapper] Test setup, not cleaning
[2025-11-27 23:18:40] 2025-11-28 04:18:39,890 [wrapper] apfmon messages muted
[2025-11-27 23:18:40] 2025-11-28 04:18:39,913 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:18:40] 2025-11-28 04:18:39,921 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:18:40]  *** Error codes and diagnostics ***
[2025-11-27 23:18:40]     "exeErrorCode": 0,
[2025-11-27 23:18:40]     "exeErrorDiag": "",
[2025-11-27 23:18:40]     "pilotErrorCode": 0,
[2025-11-27 23:18:40]     "pilotErrorDiag": "",
[2025-11-27 23:18:40]  *** Listing of results directory ***
[2025-11-27 23:18:40] total 1317732
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:04 pilot3.tar.gz
[2025-11-27 23:18:40] -rwx------. 1 boincer umatlas     36292 Nov 26 11:04 runpilot2-wrapper.sh
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:04 queuedata.json
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas       100 Nov 27 13:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:18:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 13:49 run_atlas
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas       105 Nov 27 13:49 job.xml
[2025-11-27 23:18:40] -rw-r--r--. 2 boincer umatlas 411670656 Nov 27 13:49 EVNT.47483658._002564.pool.root.1
[2025-11-27 23:18:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 13:49 start_atlas.sh
[2025-11-27 23:18:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 13:49 shared
[2025-11-27 23:18:40] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 13:49 input.tar.gz
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas         0 Nov 27 13:49 boinc_lockfile
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 13:49 pandaJob.out
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas        57 Nov 27 13:49 setup.sh.local
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas    991223 Nov 27 13:50 agis_schedconf.cvmfs.json
[2025-11-27 23:18:40] drwx------. 5 boincer umatlas      4096 Nov 27 13:50 pilot3
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:56 boinc_task_state.xml
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas 922355429 Nov 27 23:15 HITS.47556161._005464.pool.root.1
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas      1087 Nov 27 23:17 memory_monitor_summary.json
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas   1516240 Nov 27 23:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas   1797522 Nov 27 23:17 log.47556161._005464.job.log.tgz.1
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas        95 Nov 27 23:17 pilot_heartbeat.json
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas      8654 Nov 27 23:17 heartbeat.json
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas      6946 Nov 27 23:18 init_data.xml
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas      5010 Nov 27 23:18 pilotlog.txt
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas        29 Nov 27 23:18 wrapper_checkpoint.txt
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas   3911538 Nov 27 23:18 log.47556161._005464.job.log.1
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas       353 Nov 27 23:18 output.list
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas       620 Nov 27 23:18 runtime_log
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 23:18 boinc_mmap_file
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas   5724160 Nov 27 23:18 result.tar.gz
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 23:18 runtime_log.err
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas       665 Nov 27 23:18 C9VMDm5AXi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmT7MKDm7fxhTm.diag
[2025-11-27 23:18:40] -rw-r--r--. 1 boincer umatlas     21847 Nov 27 23:18 stderr.txt
[2025-11-27 23:18:40] HITS file was successfully produced:
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas 922355429 Nov 27 23:15 shared/HITS.pool.root.1
[2025-11-27 23:18:40]  *** Contents of shared directory: ***
[2025-11-27 23:18:40] total 1308960
[2025-11-27 23:18:40] -rw-r--r--. 2 boincer umatlas 411670656 Nov 27 13:49 ATLAS.root_0
[2025-11-27 23:18:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 13:49 start_atlas.sh
[2025-11-27 23:18:40] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 13:49 input.tar.gz
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas 922355429 Nov 27 23:15 HITS.pool.root.1
[2025-11-27 23:18:40] -rw-------. 1 boincer umatlas   5724160 Nov 27 23:18 result.tar.gz
23:18:41 (3763637): run_atlas exited; CPU time 194303.578423
23:18:41 (3763637): called boinc_finish(0)

</stderr_txt>
]]>

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