Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:08:23 (986004): wrapper (7.7.26015): starting
10:08:23 (986004): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 10:08:23] Arguments: --nthreads 8
[2025-11-27 10:08:23] Threads: 8
[2025-11-27 10:08:23] Checking for CVMFS
[2025-11-27 10:08:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:08:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:08:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:08:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:08:25] 2.13.3.0 7385 31587 241400 153369 3 146 27067069 32503809 72730 16776704 0 461938628 99.665 391636714 48610 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 10:08:25] CVMFS is ok
[2025-11-27 10:08:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:08:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:08:25] Further information can be found at the LHC@home message board.
[2025-11-27 10:08:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:08:25] Checking for apptainer binary...
[2025-11-27 10:08:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:08:25] Running /usr/bin/apptainer --version
[2025-11-27 10:08:26] apptainer version 1.4.4-1.el9
[2025-11-27 10:08:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:08:26] c8-7-1.aglt2.org
[2025-11-27 10:08:26] apptainer works
[2025-11-27 10:08:26] Set ATHENA_PROC_NUMBER=8
[2025-11-27 10:08:26] Set ATHENA_CORE_NUMBER=8
[2025-11-27 10:08:26] Starting ATLAS job with PandaID=6898376950
[2025-11-27 10:08:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:47:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:47:24] 2025-11-27 23:46:16,010 | INFO     | monitor loop #1748: job 0:6898376950 is in state 'finished'
[2025-11-27 18:47:24] 2025-11-27 23:46:16,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:47:24] 2025-11-27 23:46:17,339 | INFO     | time since job start (30954s) is within the limit (172800.0s)
[2025-11-27 18:47:24] 2025-11-27 23:46:18,526 | INFO     | monitor loop #1749: job 0:6898376950 is in state 'finished'
[2025-11-27 18:47:24] 2025-11-27 23:46:18,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:47:24] 2025-11-27 23:46:19,413 | INFO     | time since job start (30956s) is within the limit (172800.0s)
[2025-11-27 18:47:24] 2025-11-27 23:46:21,031 | INFO     | monitor loop #1750: job 0:6898376950 is in state 'finished'
[2025-11-27 18:47:24] 2025-11-27 23:46:21,031 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:47:24] 2025-11-27 23:46:21,420 | INFO     | time since job start (30958s) is within the limit (172800.0s)
[2025-11-27 18:47:24] 2025-11-27 23:46:23,427 | INFO     | time since job start (30960s) is within the limit (172800.0s)
[2025-11-27 18:47:24] 2025-11-27 23:46:23,536 | INFO     | monitor loop #1751: job 0:6898376950 is in state 'finished'
[2025-11-27 18:47:24] 2025-11-27 23:46:23,536 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:47:24] 2025-11-27 23:46:25,435 | INFO     | time since job start (30962s) is within the limit (172800.0s)
[2025-11-27 18:47:24] 2025-11-27 23:46:26,041 | INFO     | monitor loop #1752: job 0:6898376950 is in state 'finished'
[2025-11-27 18:47:24] 2025-11-27 23:46:26,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:47:24] 2025-11-27 23:46:26,443 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:47:24] 2025-11-27 23:46:26,453 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1412734375
[2025-11-27 18:47:24] 2025-11-27 23:46:26,490 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898376950/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:47:24] 2025-11-27 23:46:26,491 | INFO     | extracted standard info from prmon json
[2025-11-27 18:47:24] 2025-11-27 23:46:26,491 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:47:24] 2025-11-27 23:46:26,491 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:47:24] 2025-11-27 23:46:26,507 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:47:24] 2025-11-27 23:46:26,507 | INFO     | sum of square deviations: 39461897395.95635
[2025-11-27 18:47:24] 2025-11-27 23:46:26,567 | INFO     | sum of deviations: 567031526388.8721
[2025-11-27 18:47:24] 2025-11-27 23:46:26,567 | INFO     | mean x: 1764271787.1610339
[2025-11-27 18:47:24] 2025-11-27 23:46:26,567 | INFO     | mean y: 2757110.013916501
[2025-11-27 18:47:24] 2025-11-27 23:46:26,568 | INFO     | intersect: -25348221693.687874
[2025-11-27 18:47:24] 2025-11-27 23:46:26,568 | INFO     | chi2: 27.875699626732427
[2025-11-27 18:47:24] 2025-11-27 23:46:26,568 | INFO     | sum of square deviations: 38296928081.64868
[2025-11-27 18:47:24] 2025-11-27 23:46:26,575 | INFO     | sum of deviations: 727617316769.1237
[2025-11-27 18:47:24] 2025-11-27 23:46:26,575 | INFO     | mean x: 1764271634.6726909
[2025-11-27 18:47:24] 2025-11-27 23:46:26,575 | INFO     | mean y: 2778126.8473895583
[2025-11-27 18:47:24] 2025-11-27 23:46:26,575 | INFO     | intersect: -33517262700.854294
[2025-11-27 18:47:24] 2025-11-27 23:46:26,575 | INFO     | chi2: 24.549904787976427
[2025-11-27 18:47:24] 2025-11-27 23:46:26,575 | INFO     | current chi2=24.549904787976427 (change=11.930803112710423 %)
[2025-11-27 18:47:24] 2025-11-27 23:46:26,575 | INFO     | right removable region: 497
[2025-11-27 18:47:24] 2025-11-27 23:46:26,576 | INFO     | sum of square deviations: 38296571841.64868
[2025-11-27 18:47:24] 2025-11-27 23:46:26,593 | INFO     | sum of deviations: 361232769323.1355
[2025-11-27 18:47:24] 2025-11-27 23:46:26,594 | INFO     | mean x: 1764271939.6726909
[2025-11-27 18:47:24] 2025-11-27 23:46:26,594 | INFO     | mean y: 2784040.3995983936
[2025-11-27 18:47:24] 2025-11-27 23:46:26,594 | INFO     | intersect: -16638727404.600523
[2025-11-27 18:47:24] 2025-11-27 23:46:26,594 | INFO     | chi2: 22.66492750168251
[2025-11-27 18:47:24] 2025-11-27 23:46:26,594 | INFO     | current chi2=22.66492750168251 (change=18.692883747580836 %)
[2025-11-27 18:47:24] 2025-11-27 23:46:26,594 | INFO     | left removable region: 10
[2025-11-27 18:47:24] 2025-11-27 23:46:26,594 | INFO     | sum of square deviations: 35814490213.67996
[2025-11-27 18:47:24] 2025-11-27 23:46:26,616 | INFO     | sum of deviations: 374472979658.9058
[2025-11-27 18:47:24] 2025-11-27 23:46:26,616 | INFO     | mean x: 1764271909.1991787
[2025-11-27 18:47:24] 2025-11-27 23:46:26,616 | INFO     | mean y: 2835945.7638603696
[2025-11-27 18:47:24] 2025-11-27 23:46:26,616 | INFO     | intersect: -18444227095.60725
[2025-11-27 18:47:24] 2025-11-27 23:46:26,617 | INFO     | chi2: 14.325569910744303
[2025-11-27 18:47:24] 2025-11-27 23:46:26,622 | INFO     | current memory leak: 10.46 B/s (using 487 data points, chi2=14.33)
[2025-11-27 18:47:24] 2025-11-27 23:46:26,622 | INFO     | could have reported an average CPU frequency of 3796 MHz (20 samples)
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | ..............................
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . Timing measurements:
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . get job = 0 s
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . initial setup = 4 s
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . payload setup = 97 s
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . stage-in = 0 s
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . payload execution = 30695 s
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . stage-out = 6 s
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | . log creation = 1 s
[2025-11-27 18:47:24] 2025-11-27 23:46:26,623 | INFO     | ..............................
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | 
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | job summary report
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | --------------------------------------------------
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | PanDA job id: 6898376950
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | task id: 47556161
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | errors: (none)
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | pilot state: finished 
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | transexitcode: 0
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | exeerrorcode: 0
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | exeerrordiag: 
[2025-11-27 18:47:24] 2025-11-27 23:46:27,219 | INFO     | exitcode: 0
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | exitmsg: OK
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | cpuconsumptiontime: 134376 s
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | nevents: 1000
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | neventsw: 0
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | pid: 1051759
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | pgrp: 1051759
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | corecount: 8
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | event service: False
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 49: 2284901, 56: 2284929, 30797: 2323550, 30804: 2332908, 30861: 23
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | --------------------------------------------------
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | 
[2025-11-27 18:47:24] 2025-11-27 23:46:27,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 18:47:24] 2025-11-27 23:46:27,516 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,516 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,516 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,516 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | job 6898376950 has completed (purged errors)
[2025-11-27 18:47:24] 2025-11-27 23:46:27,517 | INFO     | overall cleanup function is called
[2025-11-27 18:47:24] 2025-11-27 23:46:28,625 | INFO     | --- collectZombieJob: --- 10, [1051759]
[2025-11-27 18:47:24] 2025-11-27 23:46:28,625 | INFO     | zombie collector waiting for pid 1051759
[2025-11-27 18:47:24] 2025-11-27 23:46:28,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:47:24] 2025-11-27 23:46:28,625 | INFO     | collected zombie processes
[2025-11-27 18:47:24] 2025-11-27 23:46:28,625 | INFO     | will attempt to kill all subprocesses of pid=1051759
[2025-11-27 18:47:24] 2025-11-27 23:46:30,717 | INFO     | PID=1006703 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:47:24] 2025-11-27 23:46:30,749 | INFO     | .. there are 106 such processes running
[2025-11-27 18:47:24] 2025-11-27 23:46:32,675 | INFO     | process IDs to be killed: [1051759] (in reverse order)
[2025-11-27 18:47:24] 2025-11-27 23:46:33,840 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:47:24] 2025-11-27 23:46:33,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:47:24] 2025-11-27 23:46:33,930 | INFO     | did not find any defunct processes belonging to 1051759
[2025-11-27 18:47:24] 2025-11-27 23:46:34,010 | INFO     | did not find any defunct processes belonging to 1051759
[2025-11-27 18:47:24] 2025-11-27 23:46:34,014 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:47:24] 2025-11-27 23:46:34,014 | INFO     | ready for new job
[2025-11-27 18:47:24] 2025-11-27 23:46:34,015 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:47:24] 2025-11-27 23:46:34,024 | INFO     | ***************************************
[2025-11-27 18:47:24] 2025-11-27 23:46:34,024 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:47:24] 2025-11-27 23:46:34,024 | INFO     | ***************************************
[2025-11-27 18:47:24] 2025-11-27 23:46:34,024 | INFO     | 
[2025-11-27 18:47:24] 2025-11-27 23:46:34,051 | INFO     | architecture information:
[2025-11-27 18:47:24] 2025-11-27 23:46:34,060 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:47:24] 2025-11-27 23:46:34,162 | INFO     | cat /etc/os-release:
[2025-11-27 18:47:24] NAME="CentOS Linux"
[2025-11-27 18:47:24] VERSION="7 (Core)"
[2025-11-27 18:47:24] ID="centos"
[2025-11-27 18:47:24] ID_LIKE="rhel fedora"
[2025-11-27 18:47:24] VERSION_ID="7"
[2025-11-27 18:47:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:47:24] ANSI_COLOR="0;31"
[2025-11-27 18:47:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:47:24] HOME_URL="https://www.centos.org/"
[2025-11-27 18:47:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:47:24] 
[2025-11-27 18:47:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:47:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:47:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:47:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:47:24] 
[2025-11-27 18:47:24] 2025-11-27 23:46:34,163 | INFO     | ***************************************
[2025-11-27 18:47:24] 2025-11-27 23:46:34,674 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 18:47:24] 2025-11-27 23:46:34,962 | INFO     | sufficient remaining disk space (84674609152 B)
[2025-11-27 18:47:24] 2025-11-27 23:46:34,967 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:47:24] 2025-11-27 23:46:34,967 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:47:24] 2025-11-27 23:46:34,967 | INFO     | update_server=False
[2025-11-27 18:47:24] 2025-11-27 23:46:34,967 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:47:24] 2025-11-27 23:46:34,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:47:24] 2025-11-27 23:46:34,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:47:24] 2025-11-27 23:46:34,968 | INFO     | aborting loop
[2025-11-27 18:47:24] 2025-11-27 23:46:35,040 | INFO     | all payload control threads have been joined
[2025-11-27 18:47:24] 2025-11-27 23:46:35,110 | INFO     | all data control threads have been joined
[2025-11-27 18:47:24] 2025-11-27 23:46:35,384 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:47:24] 2025-11-27 23:46:35,973 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:35,973 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:36,045 | INFO     | [payload] control thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:36,116 | INFO     | [data] control thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:36,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:47:24] 2025-11-27 23:46:36,315 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:36,392 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:36,499 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:36,591 | INFO     | all job control threads have been joined
[2025-11-27 18:47:24] 2025-11-27 23:46:36,887 | INFO     | [job] validate thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:37,002 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:37,027 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:37,252 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:37,391 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:37,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:37,447 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:37,597 | INFO     | [job] control thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:46:38,976 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:47:24] 2025-11-27 23:47:06,952 | INFO     | PID=1006703 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:47:24] 2025-11-27 23:47:06,952 | INFO     | .. there are 106 such processes running
[2025-11-27 18:47:24] 2025-11-27 23:47:06,952 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:47:24] 2025-11-27 23:47:06,952 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:47:24] 2025-11-27 23:47:06,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:47:24] 2025-11-27 23:47:17,041 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:47:24] 2025-11-27 23:47:17,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796844009280)>', '<ExcThread(monitor, started 139796185855744)>']
[2025-11-27 18:47:24] 2025-11-27 23:47:18,058 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:47:24] 2025-11-27 23:47:18,058 | INFO     | [monitor] control thread has ended
[2025-11-27 18:47:24] 2025-11-27 23:47:22,434 | INFO     | all workflow threads have been joined
[2025-11-27 18:47:24] 2025-11-27 23:47:22,434 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:47:24] 2025-11-27 23:47:22,435 | INFO     | traces error code: 0
[2025-11-27 18:47:24] 2025-11-27 23:47:22,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:47:24] 2025-11-27 23:47:23,195 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:47:24] 2025-11-27 23:47:23,247 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:47:24] 2025-11-27 23:47:23,283 [wrapper] pilotpid: 1006703
[2025-11-27 18:47:24] 2025-11-27 23:47:23,311 [wrapper] Pilot exit status: 0
[2025-11-27 18:47:24] 2025-11-27 23:47:23,551 [wrapper] pandaids: 6898376950
[2025-11-27 18:47:24] 2025-11-27 23:47:23,968 [wrapper] cleanup supervisor_pilot 1625710 1006704
[2025-11-27 18:47:24] 2025-11-27 23:47:24,016 [wrapper] Test setup, not cleaning
[2025-11-27 18:47:24] 2025-11-27 23:47:24,060 [wrapper] apfmon messages muted
[2025-11-27 18:47:24] 2025-11-27 23:47:24,101 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:47:24] 2025-11-27 23:47:24,158 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:47:24]  *** Error codes and diagnostics ***
[2025-11-27 18:47:24]     "exeErrorCode": 0,
[2025-11-27 18:47:24]     "exeErrorDiag": "",
[2025-11-27 18:47:24]     "pilotErrorCode": 0,
[2025-11-27 18:47:24]     "pilotErrorDiag": "",
[2025-11-27 18:47:24]  *** Listing of results directory ***
[2025-11-27 18:47:24] total 1316976
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:45 pilot3.tar.gz
[2025-11-27 18:47:24] -rwx------. 1 boincer umatlas     36292 Nov 26 10:54 runpilot2-wrapper.sh
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:54 queuedata.json
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas       100 Nov 27 10:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:47:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 10:08 run_atlas
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas       105 Nov 27 10:08 job.xml
[2025-11-27 18:47:24] -rw-r--r--. 2 boincer umatlas 409066968 Nov 27 10:08 EVNT.47483658._002560.pool.root.1
[2025-11-27 18:47:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 10:08 start_atlas.sh
[2025-11-27 18:47:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 10:08 shared
[2025-11-27 18:47:24] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 10:08 input.tar.gz
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas         0 Nov 27 10:08 boinc_lockfile
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 10:08 pandaJob.out
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas        57 Nov 27 10:08 setup.sh.local
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas    991580 Nov 27 10:10 agis_schedconf.cvmfs.json
[2025-11-27 18:47:24] drwx------. 5 boincer umatlas      4096 Nov 27 10:10 pilot3
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:26 boinc_task_state.xml
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas      7172 Nov 27 18:39 init_data.xml
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas 924631473 Nov 27 18:44 HITS.47556161._005428.pool.root.1
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas      1053 Nov 27 18:45 memory_monitor_summary.json
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas   1739756 Nov 27 18:45 log.47556161._005428.job.log.tgz.1
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas        95 Nov 27 18:46 pilot_heartbeat.json
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas      8592 Nov 27 18:46 heartbeat.json
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:47 boinc_mmap_file
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas      4825 Nov 27 18:47 pilotlog.txt
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:47 wrapper_checkpoint.txt
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas   3742160 Nov 27 18:47 log.47556161._005428.job.log.1
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas       353 Nov 27 18:47 output.list
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:47 runtime_log
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas   5498880 Nov 27 18:47 result.tar.gz
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas       658 Nov 27 18:47 vQRKDm11Wi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmv0JKDmVqYOwn.diag
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 18:47 runtime_log.err
[2025-11-27 18:47:24] -rw-r--r--. 1 boincer umatlas     21894 Nov 27 18:47 stderr.txt
[2025-11-27 18:47:24] HITS file was successfully produced:
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas 924631473 Nov 27 18:44 shared/HITS.pool.root.1
[2025-11-27 18:47:24]  *** Contents of shared directory: ***
[2025-11-27 18:47:24] total 1308420
[2025-11-27 18:47:24] -rw-r--r--. 2 boincer umatlas 409066968 Nov 27 10:08 ATLAS.root_0
[2025-11-27 18:47:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 10:08 start_atlas.sh
[2025-11-27 18:47:24] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 10:08 input.tar.gz
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas 924631473 Nov 27 18:44 HITS.pool.root.1
[2025-11-27 18:47:24] -rw-------. 1 boincer umatlas   5498880 Nov 27 18:47 result.tar.gz
18:47:26 (986004): run_atlas exited; CPU time 135173.990744
18:47:26 (986004): called boinc_finish(0)

</stderr_txt>
]]>

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