Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 14:27:14 (30648): vboxwrapper version 26210
2025-11-27 14:27:14 (30648): BOINC client version: 8.0.2
2025-11-27 14:27:15 (30648): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-11-27 14:27:15 (30648): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 14:27:15 (30648): Create VM. (boinc_05bc2887818e1ce4, slot#1)
2025-11-27 14:27:16 (30648): Setting Memory Size for VM. (6200MB)
2025-11-27 14:27:16 (30648): Setting CPU Count for VM. (4)
2025-11-27 14:27:16 (30648): Setting Chipset Options for VM.
2025-11-27 14:27:16 (30648): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 14:27:17 (30648): Setting Boot Options for VM.
2025-11-27 14:27:17 (30648): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 14:27:18 (30648): Enabling VM Network Access.
2025-11-27 14:27:18 (30648): Disabling USB Support for VM.
2025-11-27 14:27:18 (30648): Disabling COM Port Support for VM.
2025-11-27 14:27:18 (30648): Disabling LPT Port Support for VM.
2025-11-27 14:27:19 (30648): Disabling Audio Support for VM.
2025-11-27 14:27:19 (30648): Disabling Clipboard Support for VM.
2025-11-27 14:27:19 (30648): Disabling Drag and Drop Support for VM.
2025-11-27 14:27:19 (30648): Adding storage controller(s) to VM.
2025-11-27 14:27:20 (30648): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 14:27:20 (30648): Adding VirtualBox Guest Additions to VM.
2025-11-27 14:27:20 (30648): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 14:27:21 (30648): forwarding host port 50430 to guest port 80
2025-11-27 14:27:21 (30648): Enabling remote desktop for VM.
2025-11-27 14:27:21 (30648): Enabling shared directory for VM.
2025-11-27 14:27:22 (30648): Starting VM using VBoxManage interface. (boinc_05bc2887818e1ce4, slot#1)
2025-11-27 14:27:27 (30648): Successfully started VM. (PID = '33188')
2025-11-27 14:27:27 (30648): Reporting VM Process ID to BOINC.
2025-11-27 14:27:27 (30648): Guest Log: BIOS: VirtualBox 7.0.12
2025-11-27 14:27:27 (30648): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 14:27:27 (30648): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 14:27:27 (30648): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 14:27:27 (30648): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 14:27:27 (30648): Detected: Web Application Enabled (http://localhost:50430)
2025-11-27 14:27:27 (30648): Detected: Remote Desktop Enabled (localhost:50431)
2025-11-27 14:27:27 (30648): Preference change detected
2025-11-27 14:27:27 (30648): Setting CPU throttle for VM. (100%)
2025-11-27 14:27:28 (30648): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 14:27:29 (30648): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 14:27:29 (30648): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 14:27:31 (30648): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 14:27:31 (30648): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 14:27:31 (30648): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 14:27:36 (30648): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 14:27:36 (30648): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 14:27:39 (30648): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.000077 main     Log opened 2025-11-27T14:27:37.883134000Z
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.000140 main     OS Product: Linux
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.000181 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.000201 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.000219 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.000220 main     Process ID: 1360
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.000220 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 14:27:39 (30648): Guest Log: 00:00:00.001367 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 14:27:40 (30648): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 14:27:40 (30648): Guest Log: [INFO] Mounting shared directory
2025-11-27 14:27:40 (30648): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 14:27:43 (30648): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 14:27:43 (30648): Guest Log: [INFO] Detected branch: prod
2025-11-27 14:27:43 (30648): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 14:27:43 (30648): Guest Log: Copying input files
2025-11-27 14:27:44 (30648): Guest Log: Copied input files into RunAtlas.
2025-11-27 14:27:44 (30648): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-11-27 14:27:49 (30648): Guest Log: 00:00:10.004673 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 096 620 000ns (GuestNow=1 764 250 069 788 540 000 ns GuestLast=1 764 253 657 885 160 000 ns fSetTimeLastLoop=true )
2025-11-27 14:27:52 (30648): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 14:27:52 (30648): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 14:27:52 (30648): Guest Log: 2.6.3.0 1635 0 29580 153364 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-11-27 14:27:53 (30648): Guest Log: copied the webapp to /var/www
2025-11-27 14:27:53 (30648): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-27 14:27:53 (30648): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-27 14:27:53 (30648): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 14:27:53 (30648): Guest Log:  *** Starting ATLAS job. (PandaID=6891564478 taskID=47493068) ***
2025-11-27 16:07:32 (30648): Status Report: Elapsed Time: '6000.000000'
2025-11-27 16:07:32 (30648): Status Report: CPU Time: '22727.875000'
2025-11-27 17:47:36 (30648): Status Report: Elapsed Time: '12000.000000'
2025-11-27 17:47:36 (30648): Status Report: CPU Time: '46653.796875'
2025-11-27 19:27:40 (30648): Status Report: Elapsed Time: '18000.000000'
2025-11-27 19:27:40 (30648): Status Report: CPU Time: '70585.125000'
2025-11-27 21:07:45 (30648): Status Report: Elapsed Time: '24000.000000'
2025-11-27 21:07:45 (30648): Status Report: CPU Time: '94415.328125'
2025-11-27 21:11:18 (30648): Guest Log:  *** Job finished ***
2025-11-27 21:11:18 (30648): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:08,137 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:08,137 | INFO     | traces error code: 0
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:08,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,828 | INFO     | PID=6036 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,829 | INFO     | found 0 job(s) in 20 queues
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,829 | CRITICAL | thread 'MainThread' is not alive
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,829 | INFO     | [monitor] control thread has ended
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,873 [wrapper] ==== pilot stdout END ====
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,876 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,879 [wrapper] pilotpid: 6036
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,882 [wrapper] Pilot exit status: 0
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,891 [wrapper] pandaids: 6891564478
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,908 [wrapper] cleanup supervisor_pilot 30094 6037
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,915 [wrapper] Test setup, not cleaning
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,917 [wrapper] apfmon messages muted
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,920 [wrapper] ==== wrapper stdout END ====
2025-11-27 21:11:18 (30648): Guest Log: 2025-11-27 20:11:17,923 [wrapper] ==== wrapper stderr END ====
2025-11-27 21:11:18 (30648): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 21:11:18 (30648): Guest Log:     "exeErrorCode": 0,
2025-11-27 21:11:18 (30648): Guest Log:     "exeErrorDiag": "",
2025-11-27 21:11:18 (30648): Guest Log:     "pilotErrorCode": 0,
2025-11-27 21:11:18 (30648): Guest Log:     "pilotErrorDiag": "",
2025-11-27 21:11:18 (30648): Guest Log:  *** Listing of results directory ***
2025-11-27 21:11:18 (30648): Guest Log: total 905268
2025-11-27 21:11:18 (30648): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:15 pilot3.tar.gz
2025-11-27 21:11:18 (30648): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:29 queuedata.json
2025-11-27 21:11:18 (30648): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:29 runpilot2-wrapper.sh
2025-11-27 21:11:18 (30648): Guest Log: -rwxr-xr-x. 1 atlas atlas      9331 Nov 27 13:27 init_data.xml
2025-11-27 21:11:18 (30648): Guest Log: -rwxr-xr-x. 1 atlas atlas    590095 Nov 27 13:27 input.tar.gz
2025-11-27 21:11:18 (30648): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 27 13:27 start_atlas.sh
2025-11-27 21:11:18 (30648): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 13:27 EVNT.47493065._000122.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 21:11:18 (30648): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 27 13:27 pandaJob.out
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas    991566 Nov 27 13:28 agis_schedconf.cvmfs.json
2025-11-27 21:11:18 (30648): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 13:28 pilot3
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas 914241658 Nov 27 20:10 HITS.47493068._001220.pool.root.1
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas      1042 Nov 27 20:10 memory_monitor_summary.json
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 20:10 pilot_heartbeat.json
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 20:10 agis_ddmendpoints.agis.ALL.json
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas   1234196 Nov 27 20:10 log.47493068._001220.job.log.tgz.1
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas      8658 Nov 27 20:10 heartbeat.json
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas       814 Nov 27 20:11 pilotlog.txt
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas   3216854 Nov 27 20:11 log.47493068._001220.job.log.1
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 20:11 output.list
2025-11-27 21:11:18 (30648): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 20:11 runtime_log
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas   4474880 Nov 27 20:11 result.tar.gz
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas       652 Nov 27 20:11 ZpiKDmYpcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8FFKDmPBToJo.diag
2025-11-27 21:11:18 (30648): Guest Log: -rw-r--r--. 1 atlas atlas      8619 Nov 27 20:11 runtime_log.err
2025-11-27 21:11:18 (30648): Guest Log: Looking for outputfile HITS.47493068._001220.pool.root.1
2025-11-27 21:11:18 (30648): Guest Log: HITS file was successfully produced
2025-11-27 21:11:18 (30648): Guest Log: -rw-------. 1 atlas atlas 914241658 Nov 27 20:10 /home/atlas/RunAtlas/HITS.47493068._001220.pool.root.1
2025-11-27 21:11:21 (30648): Guest Log: Successfully finished the ATLAS job!
2025-11-27 21:11:21 (30648): Guest Log: Copying the results back to the shared directory!
2025-11-27 21:11:21 (30648): Guest Log:  *** Contents of shared directory: ***
2025-11-27 21:11:21 (30648): Guest Log: total 1298656
2025-11-27 21:11:21 (30648): Guest Log: -rwxrwxrwx. 1 root root 410489171 Nov 27 13:27 ATLAS.root_0
2025-11-27 21:11:21 (30648): Guest Log: -rwxrwxrwx. 1 root root 914241658 Nov 27 20:11 HITS.pool.root.1
2025-11-27 21:11:21 (30648): Guest Log: -rwxrwxrwx. 1 root root      9331 Nov 27 13:27 init_data.xml
2025-11-27 21:11:21 (30648): Guest Log: -rwxrwxrwx. 1 root root    590095 Nov 27 13:26 input.tar.gz
2025-11-27 21:11:21 (30648): Guest Log: -rwxrwxrwx. 1 root root   4474880 Nov 27 20:11 result.tar.gz
2025-11-27 21:11:21 (30648): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 27 13:26 start_atlas.sh
2025-11-27 21:11:21 (30648): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 21:11:21 (30648): VM Completion File Detected.
2025-11-27 21:11:21 (30648): Powering off VM.
2025-11-27 21:11:21 (30648): Successfully stopped VM.
2025-11-27 21:11:21 (30648): Deregistering VM. (boinc_05bc2887818e1ce4, slot#1)
2025-11-27 21:11:21 (30648): Removing network bandwidth throttle group from VM.
2025-11-27 21:11:22 (30648): Removing VM from VirtualBox.
2025-11-27 21:11:27 (30648): called boinc_finish(0)

</stderr_txt>
]]>

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