Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:00:42 (232766): wrapper (7.7.26015): starting
09:00:42 (232766): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:00:42] Arguments: --nthreads 8
[2025-11-27 09:00:42] Threads: 8
[2025-11-27 09:00:42] Checking for CVMFS
[2025-11-27 09:00:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:00:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:00:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:00:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:00:44] 2.13.3.0 12213 31583 231164 153366 2 355 40028702 40960001 61644 16776704 0 296758571 99.729 211286280 35336 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 09:00:44] CVMFS is ok
[2025-11-27 09:00:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:00:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:00:44] Further information can be found at the LHC@home message board.
[2025-11-27 09:00:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:00:44] Checking for apptainer binary...
[2025-11-27 09:00:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:00:44] Running /usr/bin/apptainer --version
[2025-11-27 09:00:44] apptainer version 1.4.4-1.el9
[2025-11-27 09:00:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:00:44] c7-3-35.aglt2.org
[2025-11-27 09:00:44] apptainer works
[2025-11-27 09:00:44] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:00:44] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:00:44] Starting ATLAS job with PandaID=6898362939
[2025-11-27 09:00:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:34:54]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:34:54] 2025-11-28 11:34:02,152 | INFO     | time since job start (77562s) is within the limit (172800.0s)
[2025-11-28 06:34:54] 2025-11-28 11:34:03,016 | INFO     | monitor loop #4392: job 0:6898362939 is in state 'finished'
[2025-11-28 06:34:54] 2025-11-28 11:34:03,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:34:54] 2025-11-28 11:34:04,161 | INFO     | time since job start (77564s) is within the limit (172800.0s)
[2025-11-28 06:34:54] 2025-11-28 11:34:05,521 | INFO     | monitor loop #4393: job 0:6898362939 is in state 'finished'
[2025-11-28 06:34:54] 2025-11-28 11:34:05,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:34:54] 2025-11-28 11:34:06,169 | INFO     | time since job start (77566s) is within the limit (172800.0s)
[2025-11-28 06:34:54] 2025-11-28 11:34:08,026 | INFO     | monitor loop #4394: job 0:6898362939 is in state 'finished'
[2025-11-28 06:34:54] 2025-11-28 11:34:08,028 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:34:54] 2025-11-28 11:34:08,178 | INFO     | time since job start (77568s) is within the limit (172800.0s)
[2025-11-28 06:34:54] 2025-11-28 11:34:10,537 | INFO     | monitor loop #4395: job 0:6898362939 is in state 'finished'
[2025-11-28 06:34:54] 2025-11-28 11:34:10,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:34:54] 2025-11-28 11:34:12,442 | INFO     | PID=236657 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 06:34:54] 2025-11-28 11:34:12,443 | INFO     | .. there are 87 such processes running
[2025-11-28 06:34:54] 2025-11-28 11:34:13,058 | INFO     | monitor loop #4396: job 0:6898362939 is in state 'finished'
[2025-11-28 06:34:54] 2025-11-28 11:34:13,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:34:54] 2025-11-28 11:34:13,445 | INFO     | time since job start (77573s) is within the limit (172800.0s)
[2025-11-28 06:34:54] 2025-11-28 11:34:14,178 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 06:34:54] 2025-11-28 11:34:14,205 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3286.250791666667
[2025-11-28 06:34:54] 2025-11-28 11:34:14,292 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898362939/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:34:54] 2025-11-28 11:34:14,293 | INFO     | extracted standard info from prmon json
[2025-11-28 06:34:54] 2025-11-28 11:34:14,293 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:34:54] 2025-11-28 11:34:14,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:34:54] 2025-11-28 11:34:14,374 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:34:54] 2025-11-28 11:34:14,388 | INFO     | sum of square deviations: 635164267128.2996
[2025-11-28 06:34:54] 2025-11-28 11:34:14,551 | INFO     | sum of deviations: 1808509496558.803
[2025-11-28 06:34:54] 2025-11-28 11:34:14,551 | INFO     | mean x: 1764290849.9
[2025-11-28 06:34:54] 2025-11-28 11:34:14,551 | INFO     | mean y: 2859737.368503937
[2025-11-28 06:34:54] 2025-11-28 11:34:14,551 | INFO     | intersect: -5020623040.026846
[2025-11-28 06:34:54] 2025-11-28 11:34:14,553 | INFO     | chi2: 25.78376136361507
[2025-11-28 06:34:54] 2025-11-28 11:34:14,554 | INFO     | sum of square deviations: 627692306510.9615
[2025-11-28 06:34:54] 2025-11-28 11:34:14,736 | INFO     | sum of deviations: 2216017995417.387
[2025-11-28 06:34:54] 2025-11-28 11:34:14,736 | INFO     | mean x: 1764290697.4055336
[2025-11-28 06:34:54] 2025-11-28 11:34:14,736 | INFO     | mean y: 2868052.6015810277
[2025-11-28 06:34:54] 2025-11-28 11:34:14,736 | INFO     | intersect: -6225820580.417181
[2025-11-28 06:34:54] 2025-11-28 11:34:14,737 | INFO     | chi2: 22.49025624441685
[2025-11-28 06:34:54] 2025-11-28 11:34:14,737 | INFO     | current chi2=22.49025624441685 (change=12.773563456284043 %)
[2025-11-28 06:34:54] 2025-11-28 11:34:14,738 | INFO     | right removable region: 1264
[2025-11-28 06:34:54] 2025-11-28 11:34:14,739 | INFO     | sum of square deviations: 627691221930.9617
[2025-11-28 06:34:54] 2025-11-28 11:34:14,797 | INFO     | sum of deviations: 1389490354061.442
[2025-11-28 06:34:54] 2025-11-28 11:34:14,797 | INFO     | mean x: 1764291002.4055336
[2025-11-28 06:34:54] 2025-11-28 11:34:14,797 | INFO     | mean y: 2868284.4513833993
[2025-11-28 06:34:54] 2025-11-28 11:34:14,797 | INFO     | intersect: -3902659216.8867064
[2025-11-28 06:34:54] 2025-11-28 11:34:14,798 | INFO     | chi2: 23.05246254303649
[2025-11-28 06:34:54] 2025-11-28 11:34:14,798 | INFO     | current chi2=23.05246254303649 (change=10.593096880088531 %)
[2025-11-28 06:34:54] 2025-11-28 11:34:14,798 | INFO     | left removable region: 10
[2025-11-28 06:34:54] 2025-11-28 11:34:14,799 | INFO     | sum of square deviations: 611458760884.2073
[2025-11-28 06:34:54] 2025-11-28 11:34:14,826 | INFO     | sum of deviations: 1810234652182.051
[2025-11-28 06:34:54] 2025-11-28 11:34:14,826 | INFO     | mean x: 1764290971.9162679
[2025-11-28 06:34:54] 2025-11-28 11:34:14,826 | INFO     | mean y: 2879566.2671451354
[2025-11-28 06:34:54] 2025-11-28 11:34:14,827 | INFO     | intersect: -5220335568.104915
[2025-11-28 06:34:54] 2025-11-28 11:34:14,827 | INFO     | chi2: 19.142126433726194
[2025-11-28 06:34:54] 2025-11-28 11:34:14,828 | INFO     | current memory leak: 2.96 B/s (using 1254 data points, chi2=19.14)
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | could have reported an average CPU frequency of 3239 MHz (46 samples)
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | ..............................
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . Timing measurements:
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . get job = 0 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . initial setup = 6 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . payload setup = 18 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . stage-in = 0 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . payload execution = 77465 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . stage-out = 9 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | . log creation = 2 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,829 | INFO     | ..............................
[2025-11-28 06:34:54] 2025-11-28 11:34:14,973 | INFO     | 
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | job summary report
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | --------------------------------------------------
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | PanDA job id: 6898362939
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | task id: 47556161
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | errors: (none)
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | pilot state: finished 
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | transexitcode: 0
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | exeerrorcode: 0
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | exeerrordiag: 
[2025-11-28 06:34:54] 2025-11-28 11:34:14,977 | INFO     | exitcode: 0
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | exitmsg: OK
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | cpuconsumptiontime: 195087 s
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | nevents: 1000
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | neventsw: 0
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | pid: 248085
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | pgrp: 248085
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | corecount: 8
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | event service: False
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | sizes: {0: 2284088, 1: 2284343, 12: 2284633, 22: 2284633, 77488: 2343551, 77499: 2352545, 77501: 2352729, 77540: 2352975}
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | --------------------------------------------------
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | 
[2025-11-28 06:34:54] 2025-11-28 11:34:14,978 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 06:34:54] 2025-11-28 11:34:15,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:34:54] 2025-11-28 11:34:15,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,173 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:34:54] 2025-11-28 11:34:15,173 | INFO     | job 6898362939 has completed (purged errors)
[2025-11-28 06:34:54] 2025-11-28 11:34:15,173 | INFO     | overall cleanup function is called
[2025-11-28 06:34:54] 2025-11-28 11:34:16,226 | INFO     | --- collectZombieJob: --- 10, [248085]
[2025-11-28 06:34:54] 2025-11-28 11:34:16,226 | INFO     | zombie collector waiting for pid 248085
[2025-11-28 06:34:54] 2025-11-28 11:34:16,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:34:54] 2025-11-28 11:34:16,226 | INFO     | collected zombie processes
[2025-11-28 06:34:54] 2025-11-28 11:34:16,226 | INFO     | will attempt to kill all subprocesses of pid=248085
[2025-11-28 06:34:54] 2025-11-28 11:34:20,599 | INFO     | process IDs to be killed: [248085] (in reverse order)
[2025-11-28 06:34:54] 2025-11-28 11:34:21,427 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:34:54] 2025-11-28 11:34:21,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:34:54] 2025-11-28 11:34:21,460 | INFO     | did not find any defunct processes belonging to 248085
[2025-11-28 06:34:54] 2025-11-28 11:34:21,496 | INFO     | did not find any defunct processes belonging to 248085
[2025-11-28 06:34:54] 2025-11-28 11:34:21,505 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:34:54] 2025-11-28 11:34:21,505 | INFO     | ready for new job
[2025-11-28 06:34:54] 2025-11-28 11:34:21,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:34:54] 2025-11-28 11:34:21,515 | INFO     | ***************************************
[2025-11-28 06:34:54] 2025-11-28 11:34:21,544 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:34:54] 2025-11-28 11:34:21,544 | INFO     | ***************************************
[2025-11-28 06:34:54] 2025-11-28 11:34:21,544 | INFO     | 
[2025-11-28 06:34:54] 2025-11-28 11:34:21,550 | INFO     | architecture information:
[2025-11-28 06:34:54] 2025-11-28 11:34:21,561 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:34:54] 2025-11-28 11:34:21,733 | INFO     | cat /etc/os-release:
[2025-11-28 06:34:54] NAME="CentOS Linux"
[2025-11-28 06:34:54] VERSION="7 (Core)"
[2025-11-28 06:34:54] ID="centos"
[2025-11-28 06:34:54] ID_LIKE="rhel fedora"
[2025-11-28 06:34:54] VERSION_ID="7"
[2025-11-28 06:34:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:34:54] ANSI_COLOR="0;31"
[2025-11-28 06:34:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:34:54] HOME_URL="https://www.centos.org/"
[2025-11-28 06:34:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:34:54] 
[2025-11-28 06:34:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:34:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:34:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:34:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:34:54] 
[2025-11-28 06:34:54] 2025-11-28 11:34:21,733 | INFO     | ***************************************
[2025-11-28 06:34:54] 2025-11-28 11:34:22,246 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 06:34:54] 2025-11-28 11:34:22,394 | INFO     | sufficient remaining disk space (119195828224 B)
[2025-11-28 06:34:54] 2025-11-28 11:34:22,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:34:54] 2025-11-28 11:34:22,395 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:34:54] 2025-11-28 11:34:22,395 | INFO     | update_server=False
[2025-11-28 06:34:54] 2025-11-28 11:34:22,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:34:54] 2025-11-28 11:34:22,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:34:54] 2025-11-28 11:34:22,396 | INFO     | aborting loop
[2025-11-28 06:34:54] 2025-11-28 11:34:22,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:34:54] 2025-11-28 11:34:22,675 | INFO     | all data control threads have been joined
[2025-11-28 06:34:54] 2025-11-28 11:34:22,693 | INFO     | all payload control threads have been joined
[2025-11-28 06:34:54] 2025-11-28 11:34:23,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:34:54] 2025-11-28 11:34:23,361 | INFO     | all job control threads have been joined
[2025-11-28 06:34:54] 2025-11-28 11:34:23,401 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:23,402 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:23,418 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:23,682 | INFO     | [data] control thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:23,699 | INFO     | [payload] control thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:23,715 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,010 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:34:54] 2025-11-28 11:34:24,046 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,152 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,226 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,317 | INFO     | [job] validate thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,367 | INFO     | [job] control thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,416 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,630 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:24,760 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:25,016 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:27,067 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:34:54] 2025-11-28 11:34:36,578 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:34:54] 2025-11-28 11:34:37,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139699925038912)>', '<ExcThread(monitor, started 139699431659264)>']
[2025-11-28 06:34:54] 2025-11-28 11:34:42,747 | INFO     | all workflow threads have been joined
[2025-11-28 06:34:54] 2025-11-28 11:34:42,747 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:34:54] 2025-11-28 11:34:42,747 | INFO     | traces error code: 0
[2025-11-28 06:34:54] 2025-11-28 11:34:42,748 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:34:54] 2025-11-28 11:34:51,621 | INFO     | PID=236657 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 06:34:54] 2025-11-28 11:34:51,622 | INFO     | .. there are 87 such processes running
[2025-11-28 06:34:54] 2025-11-28 11:34:51,623 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:34:54] 2025-11-28 11:34:51,623 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:34:54] 2025-11-28 11:34:51,623 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:34:54] 2025-11-28 11:34:51,623 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:34:54] 2025-11-28 11:34:51,623 | INFO     | [monitor] control thread has ended
[2025-11-28 06:34:54] 2025-11-28 11:34:52,002 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:34:54] 2025-11-28 11:34:52,033 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:34:54] 2025-11-28 11:34:52,063 [wrapper] pilotpid: 236657
[2025-11-28 06:34:54] 2025-11-28 11:34:52,130 [wrapper] Pilot exit status: 0
[2025-11-28 06:34:54] 2025-11-28 11:34:52,283 [wrapper] pandaids: 6898362939
[2025-11-28 06:34:54] 2025-11-28 11:34:53,242 [wrapper] cleanup supervisor_pilot 4159925 236658
[2025-11-28 06:34:54] 2025-11-28 11:34:53,314 [wrapper] Test setup, not cleaning
[2025-11-28 06:34:54] 2025-11-28 11:34:53,339 [wrapper] apfmon messages muted
[2025-11-28 06:34:54] 2025-11-28 11:34:53,357 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:34:54] 2025-11-28 11:34:53,413 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:34:54]  *** Error codes and diagnostics ***
[2025-11-28 06:34:54]     "exeErrorCode": 0,
[2025-11-28 06:34:54]     "exeErrorDiag": "",
[2025-11-28 06:34:54]     "pilotErrorCode": 0,
[2025-11-28 06:34:54]     "pilotErrorDiag": "",
[2025-11-28 06:34:54]  *** Listing of results directory ***
[2025-11-28 06:34:54] total 1325052
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:45 pilot3.tar.gz
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:51 queuedata.json
[2025-11-28 06:34:54] -rwx------. 1 boincer umatlas     36292 Nov 26 10:53 runpilot2-wrapper.sh
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas       100 Nov 27 09:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:34:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 09:00 run_atlas
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas       105 Nov 27 09:00 job.xml
[2025-11-28 06:34:54] -rw-r--r--. 2 boincer umatlas 408830105 Nov 27 09:00 EVNT.47483658._002557.pool.root.1
[2025-11-28 06:34:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 09:00 start_atlas.sh
[2025-11-28 06:34:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 09:00 shared
[2025-11-28 06:34:54] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 09:00 input.tar.gz
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas         0 Nov 27 09:00 boinc_lockfile
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 09:00 pandaJob.out
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas        57 Nov 27 09:00 setup.sh.local
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas    991588 Nov 27 09:01 agis_schedconf.cvmfs.json
[2025-11-28 06:34:54] drwx------. 5 boincer umatlas      4096 Nov 27 09:01 pilot3
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas       533 Nov 28 05:56 boinc_task_state.xml
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas      6949 Nov 28 06:30 init_data.xml
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas 920673672 Nov 28 06:32 HITS.47556161._005395.pool.root.1
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas      1068 Nov 28 06:33 memory_monitor_summary.json
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas   1516240 Nov 28 06:33 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas   2299312 Nov 28 06:33 log.47556161._005395.job.log.tgz.1
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas      7950 Nov 28 06:34 heartbeat.json
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas        95 Nov 28 06:34 pilot_heartbeat.json
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas       822 Nov 28 06:34 pilotlog.txt
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 06:34 boinc_mmap_file
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas   9420917 Nov 28 06:34 log.47556161._005395.job.log.1
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas       353 Nov 28 06:34 output.list
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas        29 Nov 28 06:34 wrapper_checkpoint.txt
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas       620 Nov 28 06:34 runtime_log
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas  11735040 Nov 28 06:34 result.tar.gz
[2025-11-28 06:34:54] -rw-------. 1 boincer umatlas       664 Nov 28 06:34 S9ILDm20Wi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY6MKDmDKRWPn.diag
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas      9338 Nov 28 06:34 runtime_log.err
[2025-11-28 06:34:54] -rw-r--r--. 1 boincer umatlas     21835 Nov 28 06:34 stderr.txt
[2025-11-28 06:34:55] HITS file was successfully produced:
[2025-11-28 06:34:55] -rw-------. 1 boincer umatlas 920673672 Nov 28 06:32 shared/HITS.pool.root.1
[2025-11-28 06:34:55]  *** Contents of shared directory: ***
[2025-11-28 06:34:55] total 1310408
[2025-11-28 06:34:55] -rw-r--r--. 2 boincer umatlas 408830105 Nov 27 09:00 ATLAS.root_0
[2025-11-28 06:34:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 09:00 start_atlas.sh
[2025-11-28 06:34:55] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 09:00 input.tar.gz
[2025-11-28 06:34:55] -rw-------. 1 boincer umatlas 920673672 Nov 28 06:32 HITS.pool.root.1
[2025-11-28 06:34:55] -rw-------. 1 boincer umatlas  11735040 Nov 28 06:34 result.tar.gz
06:34:56 (232766): run_atlas exited; CPU time 197909.479122
06:34:56 (232766): called boinc_finish(0)

</stderr_txt>
]]>

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