Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:22:16 (10855): wrapper (7.7.26015): starting
08:22:16 (10855): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 08:22:16] Arguments: --nthreads 9
[2025-11-27 08:22:16] Threads: 9
[2025-11-27 08:22:16] Checking for CVMFS
[2025-11-27 08:22:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:22:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:22:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:22:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:22:17] 2.13.3.0 12213 31544 269892 153364 1 1082 39496285 40960000 59906 16776704 0 296468750 99.729 211091622 35340 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 08:22:17] CVMFS is ok
[2025-11-27 08:22:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:22:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:22:17] Further information can be found at the LHC@home message board.
[2025-11-27 08:22:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:22:17] Checking for apptainer binary...
[2025-11-27 08:22:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:22:17] Running /usr/bin/apptainer --version
[2025-11-27 08:22:17] apptainer version 1.4.4-1.el9
[2025-11-27 08:22:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:22:17] c7-3-35.aglt2.org
[2025-11-27 08:22:17] apptainer works
[2025-11-27 08:22:17] Set ATHENA_PROC_NUMBER=9
[2025-11-27 08:22:17] Set ATHENA_CORE_NUMBER=9
[2025-11-27 08:22:17] Starting ATLAS job with PandaID=6898362955
[2025-11-27 08:22:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:25:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:25:08] 2025-11-28 01:23:49,073 | INFO     | time since job start (43264s) is within the limit (172800.0s)
[2025-11-27 20:25:08] 2025-11-28 01:23:49,475 | INFO     | monitor loop #2662: job 0:6898362955 is in state 'finished'
[2025-11-27 20:25:08] 2025-11-28 01:23:49,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:25:08] 2025-11-28 01:23:51,086 | INFO     | time since job start (43266s) is within the limit (172800.0s)
[2025-11-27 20:25:08] 2025-11-28 01:23:51,980 | INFO     | monitor loop #2663: job 0:6898362955 is in state 'finished'
[2025-11-27 20:25:08] 2025-11-28 01:23:51,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:25:08] 2025-11-28 01:23:53,096 | INFO     | time since job start (43268s) is within the limit (172800.0s)
[2025-11-27 20:25:08] 2025-11-28 01:23:54,488 | INFO     | monitor loop #2664: job 0:6898362955 is in state 'finished'
[2025-11-27 20:25:08] 2025-11-28 01:23:54,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:25:08] 2025-11-28 01:23:55,111 | INFO     | time since job start (43270s) is within the limit (172800.0s)
[2025-11-27 20:25:08] 2025-11-28 01:23:56,996 | INFO     | monitor loop #2665: job 0:6898362955 is in state 'finished'
[2025-11-27 20:25:08] 2025-11-28 01:23:57,000 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:25:08] 2025-11-28 01:23:57,118 | INFO     | time since job start (43272s) is within the limit (172800.0s)
[2025-11-27 20:25:08] 2025-11-28 01:23:59,633 | INFO     | monitor loop #2666: job 0:6898362955 is in state 'finished'
[2025-11-27 20:25:08] 2025-11-28 01:23:59,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,302 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:25:08] 2025-11-28 01:24:00,321 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3267.5045729166673
[2025-11-27 20:25:08] 2025-11-28 01:24:00,400 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898362955/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,400 | INFO     | extracted standard info from prmon json
[2025-11-27 20:25:08] 2025-11-28 01:24:00,400 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:25:08] 2025-11-28 01:24:00,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:25:08] 2025-11-28 01:24:00,438 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:25:08] 2025-11-28 01:24:00,439 | INFO     | sum of square deviations: 110042111413.21468
[2025-11-27 20:25:08] 2025-11-28 01:24:00,460 | INFO     | sum of deviations: 5526556721242.044
[2025-11-27 20:25:08] 2025-11-28 01:24:00,460 | INFO     | mean x: 1764271397.2570622
[2025-11-27 20:25:08] 2025-11-28 01:24:00,460 | INFO     | mean y: 3827921.2415254237
[2025-11-27 20:25:08] 2025-11-28 01:24:00,460 | INFO     | intersect: -88601759734.13324
[2025-11-27 20:25:08] 2025-11-28 01:24:00,461 | INFO     | chi2: 22.869024990572058
[2025-11-27 20:25:08] 2025-11-28 01:24:00,462 | INFO     | sum of square deviations: 107727414852.6687
[2025-11-27 20:25:08] 2025-11-28 01:24:00,508 | INFO     | sum of deviations: 5864029006931.623
[2025-11-27 20:25:08] 2025-11-28 01:24:00,508 | INFO     | mean x: 1764271244.7695591
[2025-11-27 20:25:08] 2025-11-28 01:24:00,508 | INFO     | mean y: 3850148.9359886204
[2025-11-27 20:25:08] 2025-11-28 01:24:00,508 | INFO     | intersect: -96032407377.27684
[2025-11-27 20:25:08] 2025-11-28 01:24:00,519 | INFO     | chi2: 18.450729777930807
[2025-11-27 20:25:08] 2025-11-28 01:24:00,519 | INFO     | current chi2=18.450729777930807 (change=19.319998182969012 %)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,519 | INFO     | right removable region: 702
[2025-11-27 20:25:08] 2025-11-28 01:24:00,521 | INFO     | sum of square deviations: 107726656012.66876
[2025-11-27 20:25:08] 2025-11-28 01:24:00,551 | INFO     | sum of deviations: 5139894709230.217
[2025-11-27 20:25:08] 2025-11-28 01:24:00,552 | INFO     | mean x: 1764271549.7695591
[2025-11-27 20:25:08] 2025-11-28 01:24:00,552 | INFO     | mean y: 3853384.4210526315
[2025-11-27 20:25:08] 2025-11-28 01:24:00,552 | INFO     | intersect: -84173734038.69109
[2025-11-27 20:25:08] 2025-11-28 01:24:00,554 | INFO     | chi2: 18.925104382304127
[2025-11-27 20:25:08] 2025-11-28 01:24:00,554 | INFO     | current chi2=18.925104382304127 (change=17.245687605369465 %)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,564 | INFO     | left removable region: 10
[2025-11-27 20:25:08] 2025-11-28 01:24:00,566 | INFO     | sum of square deviations: 102748335262.67633
[2025-11-27 20:25:08] 2025-11-28 01:24:00,588 | INFO     | sum of deviations: 5214794905195.187
[2025-11-27 20:25:08] 2025-11-28 01:24:00,588 | INFO     | mean x: 1764271519.2976878
[2025-11-27 20:25:08] 2025-11-28 01:24:00,589 | INFO     | mean y: 3902625.4942196533
[2025-11-27 20:25:08] 2025-11-28 01:24:00,589 | INFO     | intersect: -89538318245.47105
[2025-11-27 20:25:08] 2025-11-28 01:24:00,590 | INFO     | chi2: 11.156323313321655
[2025-11-27 20:25:08] 2025-11-28 01:24:00,591 | INFO     | current memory leak: 50.75 B/s (using 692 data points, chi2=11.16)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,592 | INFO     | could have reported an average CPU frequency of 3233 MHz (27 samples)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,593 | INFO     | ..............................
[2025-11-27 20:25:08] 2025-11-28 01:24:00,593 | INFO     | . Timing measurements:
[2025-11-27 20:25:08] 2025-11-28 01:24:00,593 | INFO     | . get job = 0 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,593 | INFO     | . initial setup = 4 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,593 | INFO     | . payload setup = 17 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,593 | INFO     | . stage-in = 0 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,594 | INFO     | . payload execution = 43186 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,594 | INFO     | . stage-out = 7 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,594 | INFO     | . log creation = 1 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,594 | INFO     | ..............................
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | 
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | job summary report
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | --------------------------------------------------
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | PanDA job id: 6898362955
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | task id: 47556161
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | errors: (none)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | pilot state: finished 
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | transexitcode: 0
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | exeerrorcode: 0
[2025-11-27 20:25:08] 2025-11-28 01:24:00,901 | INFO     | exeerrordiag: 
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | exitcode: 0
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | exitmsg: OK
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | cpuconsumptiontime: 188261 s
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | nevents: 1000
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | neventsw: 0
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | pid: 36805
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | pgrp: 36805
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | corecount: 9
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | event service: False
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284627, 23: 2284627, 43208: 2328714, 43209: 2328713, 43217: 2337947, 43240: 2338137}
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | --------------------------------------------------
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | 
[2025-11-27 20:25:08] 2025-11-28 01:24:00,902 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:25:08] 2025-11-28 01:24:00,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,952 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,953 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,954 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,954 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,954 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,954 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:25:08] 2025-11-28 01:24:00,954 | INFO     | job 6898362955 has completed (purged errors)
[2025-11-27 20:25:08] 2025-11-28 01:24:00,954 | INFO     | overall cleanup function is called
[2025-11-27 20:25:08] 2025-11-28 01:24:00,955 | INFO     | PID=17935 has CPU usage=12.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 20:25:08] 2025-11-28 01:24:00,955 | INFO     | .. there are 86 such processes running
[2025-11-27 20:25:08] 2025-11-28 01:24:01,991 | INFO     | --- collectZombieJob: --- 10, [36805]
[2025-11-27 20:25:08] 2025-11-28 01:24:01,991 | INFO     | zombie collector waiting for pid 36805
[2025-11-27 20:25:08] 2025-11-28 01:24:01,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:25:08] 2025-11-28 01:24:01,991 | INFO     | collected zombie processes
[2025-11-27 20:25:08] 2025-11-28 01:24:01,991 | INFO     | will attempt to kill all subprocesses of pid=36805
[2025-11-27 20:25:08] 2025-11-28 01:24:03,636 | INFO     | process IDs to be killed: [36805] (in reverse order)
[2025-11-27 20:25:08] 2025-11-28 01:24:03,956 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:25:08] 2025-11-28 01:24:03,956 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:25:08] 2025-11-28 01:24:04,054 | INFO     | did not find any defunct processes belonging to 36805
[2025-11-27 20:25:08] 2025-11-28 01:24:04,088 | INFO     | did not find any defunct processes belonging to 36805
[2025-11-27 20:25:08] 2025-11-28 01:24:04,109 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:25:08] 2025-11-28 01:24:04,110 | INFO     | ready for new job
[2025-11-27 20:25:08] 2025-11-28 01:24:04,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:25:08] 2025-11-28 01:24:04,125 | INFO     | ***************************************
[2025-11-27 20:25:08] 2025-11-28 01:24:04,125 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:25:08] 2025-11-28 01:24:04,125 | INFO     | ***************************************
[2025-11-27 20:25:08] 2025-11-28 01:24:04,125 | INFO     | 
[2025-11-27 20:25:08] 2025-11-28 01:24:04,130 | INFO     | architecture information:
[2025-11-27 20:25:08] 2025-11-28 01:24:04,135 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:25:08] 2025-11-28 01:24:04,259 | INFO     | cat /etc/os-release:
[2025-11-27 20:25:08] NAME="CentOS Linux"
[2025-11-27 20:25:08] VERSION="7 (Core)"
[2025-11-27 20:25:08] ID="centos"
[2025-11-27 20:25:08] ID_LIKE="rhel fedora"
[2025-11-27 20:25:08] VERSION_ID="7"
[2025-11-27 20:25:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:25:08] ANSI_COLOR="0;31"
[2025-11-27 20:25:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:25:08] HOME_URL="https://www.centos.org/"
[2025-11-27 20:25:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:25:08] 
[2025-11-27 20:25:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:25:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:25:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:25:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:25:08] 
[2025-11-27 20:25:08] 2025-11-28 01:24:04,259 | INFO     | ***************************************
[2025-11-27 20:25:08] 2025-11-28 01:24:04,765 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:25:08] 2025-11-28 01:24:04,871 | INFO     | sufficient remaining disk space (122058440704 B)
[2025-11-27 20:25:08] 2025-11-28 01:24:04,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:25:08] 2025-11-28 01:24:04,872 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:25:08] 2025-11-28 01:24:04,872 | INFO     | update_server=False
[2025-11-27 20:25:08] 2025-11-28 01:24:04,872 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:25:08] 2025-11-28 01:24:04,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:25:08] 2025-11-28 01:24:05,240 | INFO     | all payload control threads have been joined
[2025-11-27 20:25:08] 2025-11-28 01:24:05,640 | INFO     | all data control threads have been joined
[2025-11-27 20:25:08] 2025-11-28 01:24:05,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:25:08] 2025-11-28 01:24:05,748 | INFO     | aborting loop
[2025-11-27 20:25:08] 2025-11-28 01:24:05,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:25:08] 2025-11-28 01:24:05,878 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,152 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,243 | INFO     | all job control threads have been joined
[2025-11-27 20:25:08] 2025-11-28 01:24:06,246 | INFO     | [payload] control thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,300 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,517 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,621 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,650 | INFO     | [data] control thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,754 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,773 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,861 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,890 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:06,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:25:08] 2025-11-28 01:24:07,133 | INFO     | [job] validate thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:07,139 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:07,249 | INFO     | [job] control thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:07,444 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:10,992 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:25:08] 2025-11-28 01:24:35,103 | INFO     | PID=17935 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 20:25:08] 2025-11-28 01:24:35,103 | INFO     | .. there are 86 such processes running
[2025-11-27 20:25:08] 2025-11-28 01:24:35,103 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:25:08] 2025-11-28 01:24:35,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:25:08] 2025-11-28 01:24:35,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:25:08] 2025-11-28 01:25:00,505 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:25:08] 2025-11-28 01:25:01,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139939405612864)>', '<ExcThread(monitor, started 139938691544832)>']
[2025-11-27 20:25:08] 2025-11-28 01:25:02,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:25:08] 2025-11-28 01:25:02,308 | INFO     | [monitor] control thread has ended
[2025-11-27 20:25:08] 2025-11-28 01:25:06,590 | INFO     | all workflow threads have been joined
[2025-11-27 20:25:08] 2025-11-28 01:25:06,590 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:25:08] 2025-11-28 01:25:06,590 | INFO     | traces error code: 0
[2025-11-27 20:25:08] 2025-11-28 01:25:06,590 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:25:08] 2025-11-28 01:25:07,466 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:25:08] 2025-11-28 01:25:07,479 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:25:08] 2025-11-28 01:25:07,505 [wrapper] pilotpid: 17935
[2025-11-27 20:25:08] 2025-11-28 01:25:07,524 [wrapper] Pilot exit status: 0
[2025-11-27 20:25:08] 2025-11-28 01:25:07,627 [wrapper] pandaids: 6898362955
[2025-11-27 20:25:08] 2025-11-28 01:25:08,005 [wrapper] cleanup supervisor_pilot  137851 17936
[2025-11-27 20:25:08] 2025-11-28 01:25:08,007 [wrapper] Test setup, not cleaning
[2025-11-27 20:25:08] 2025-11-28 01:25:08,013 [wrapper] apfmon messages muted
[2025-11-27 20:25:08] 2025-11-28 01:25:08,015 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:25:08] 2025-11-28 01:25:08,018 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:25:08]  *** Error codes and diagnostics ***
[2025-11-27 20:25:08]     "exeErrorCode": 0,
[2025-11-27 20:25:08]     "exeErrorDiag": "",
[2025-11-27 20:25:08]     "pilotErrorCode": 0,
[2025-11-27 20:25:08]     "pilotErrorDiag": "",
[2025-11-27 20:25:08]  *** Listing of results directory ***
[2025-11-27 20:25:08] total 1299928
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:45 pilot3.tar.gz
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:51 queuedata.json
[2025-11-27 20:25:08] -rwx------. 1 boincer umatlas     36292 Nov 26 10:53 runpilot2-wrapper.sh
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:25:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:22 run_atlas
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:22 job.xml
[2025-11-27 20:25:08] -rw-r--r--. 2 boincer umatlas 409661842 Nov 27 08:22 EVNT.47483658._002559.pool.root.1
[2025-11-27 20:25:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:22 start_atlas.sh
[2025-11-27 20:25:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:22 shared
[2025-11-27 20:25:08] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 08:22 input.tar.gz
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:22 boinc_lockfile
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 08:22 pandaJob.out
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas        57 Nov 27 08:22 setup.sh.local
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas    991566 Nov 27 08:22 agis_schedconf.cvmfs.json
[2025-11-27 20:25:08] drwx------. 5 boincer umatlas      4096 Nov 27 08:22 pilot3
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:01 boinc_task_state.xml
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 20:21 init_data.xml
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas 902384158 Nov 27 20:21 HITS.47556161._005411.pool.root.1
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas      1076 Nov 27 20:23 memory_monitor_summary.json
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:23 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas   2037838 Nov 27 20:23 log.47556161._005411.job.log.tgz.1
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas      7970 Nov 27 20:24 heartbeat.json
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas        95 Nov 27 20:24 pilot_heartbeat.json
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas      4823 Nov 27 20:25 pilotlog.txt
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:25 wrapper_checkpoint.txt
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:25 boinc_mmap_file
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas   5545983 Nov 27 20:25 log.47556161._005411.job.log.1
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas       353 Nov 27 20:25 output.list
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:25 runtime_log
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas   7598080 Nov 27 20:25 result.tar.gz
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas       665 Nov 27 20:25 tOWLDm20Wi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf6MKDmgYyM2m.diag
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 20:25 runtime_log.err
[2025-11-27 20:25:08] -rw-r--r--. 1 boincer umatlas     21838 Nov 27 20:25 stderr.txt
[2025-11-27 20:25:08] HITS file was successfully produced:
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas 902384158 Nov 27 20:21 shared/HITS.pool.root.1
[2025-11-27 20:25:08]  *** Contents of shared directory: ***
[2025-11-27 20:25:08] total 1289324
[2025-11-27 20:25:08] -rw-r--r--. 2 boincer umatlas 409661842 Nov 27 08:22 ATLAS.root_0
[2025-11-27 20:25:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:22 start_atlas.sh
[2025-11-27 20:25:08] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 08:22 input.tar.gz
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas 902384158 Nov 27 20:21 HITS.pool.root.1
[2025-11-27 20:25:08] -rw-------. 1 boincer umatlas   7598080 Nov 27 20:25 result.tar.gz
20:25:09 (10855): run_atlas exited; CPU time 188753.858269
20:25:09 (10855): called boinc_finish(0)

</stderr_txt>
]]>

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