Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:52:14 (3263534): wrapper (7.7.26015): starting
08:52:14 (3263534): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 08:52:14] Arguments: --nthreads 9
[2025-11-27 08:52:14] Threads: 9
[2025-11-27 08:52:14] Checking for CVMFS
[2025-11-27 08:52:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:52:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:52:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:52:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:52:15] 2.13.3.0 14106 31525 279456 153366 0 640 27621091 40960001 60803 16776704 0 398433060 99.750 262242289 47227 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 08:52:15] CVMFS is ok
[2025-11-27 08:52:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:52:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:52:15] Further information can be found at the LHC@home message board.
[2025-11-27 08:52:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:52:15] Checking for apptainer binary...
[2025-11-27 08:52:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:52:15] Running /usr/bin/apptainer --version
[2025-11-27 08:52:15] apptainer version 1.4.4-1.el9
[2025-11-27 08:52:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:52:15] c8-7-5.aglt2.org
[2025-11-27 08:52:15] apptainer works
[2025-11-27 08:52:15] Set ATHENA_PROC_NUMBER=9
[2025-11-27 08:52:15] Set ATHENA_CORE_NUMBER=9
[2025-11-27 08:52:15] Starting ATLAS job with PandaID=6898376945
[2025-11-27 08:52:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:49:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:49:07] 2025-11-28 00:47:49,912 | INFO     | .. there are 97 such processes running
[2025-11-27 19:49:07] 2025-11-28 00:47:50,914 | INFO     | time since job start (39320s) is within the limit (172800.0s)
[2025-11-27 19:49:07] 2025-11-28 00:47:52,921 | INFO     | time since job start (39322s) is within the limit (172800.0s)
[2025-11-27 19:49:07] 2025-11-28 00:47:54,949 | INFO     | time since job start (39324s) is within the limit (172800.0s)
[2025-11-27 19:49:07] 2025-11-28 00:47:56,956 | INFO     | time since job start (39326s) is within the limit (172800.0s)
[2025-11-27 19:49:07] 2025-11-28 00:47:58,963 | INFO     | time since job start (39328s) is within the limit (172800.0s)
[2025-11-27 19:49:07] 2025-11-28 00:48:00,970 | INFO     | time since job start (39330s) is within the limit (172800.0s)
[2025-11-27 19:49:07] 2025-11-28 00:48:02,981 | INFO     | time since job start (39332s) is within the limit (172800.0s)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,708 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 19:49:07] 2025-11-28 00:48:04,726 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.990015625
[2025-11-27 19:49:07] 2025-11-28 00:48:04,748 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898376945/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,748 | INFO     | extracted standard info from prmon json
[2025-11-27 19:49:07] 2025-11-28 00:48:04,749 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:49:07] 2025-11-28 00:48:04,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:49:07] 2025-11-28 00:48:04,755 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:49:07] 2025-11-28 00:48:04,757 | INFO     | sum of square deviations: 82819691857.77684
[2025-11-27 19:49:07] 2025-11-28 00:48:04,762 | INFO     | sum of deviations: 84296928707.56534
[2025-11-27 19:49:07] 2025-11-28 00:48:04,762 | INFO     | mean x: 1764271216.5900621
[2025-11-27 19:49:07] 2025-11-28 00:48:04,763 | INFO     | mean y: 2978366.6195652173
[2025-11-27 19:49:07] 2025-11-28 00:48:04,763 | INFO     | intersect: -1792761772.3451855
[2025-11-27 19:49:07] 2025-11-28 00:48:04,763 | INFO     | chi2: 17.097555699179438
[2025-11-27 19:49:07] 2025-11-28 00:48:04,763 | INFO     | sum of square deviations: 80905804956.7886
[2025-11-27 19:49:07] 2025-11-28 00:48:04,768 | INFO     | sum of deviations: 315143129732.6188
[2025-11-27 19:49:07] 2025-11-28 00:48:04,768 | INFO     | mean x: 1764271064.0985916
[2025-11-27 19:49:07] 2025-11-28 00:48:04,769 | INFO     | mean y: 2996758.5774647887
[2025-11-27 19:49:07] 2025-11-28 00:48:04,769 | INFO     | intersect: -6869166556.943388
[2025-11-27 19:49:07] 2025-11-28 00:48:04,769 | INFO     | chi2: 13.384989246726462
[2025-11-27 19:49:07] 2025-11-28 00:48:04,769 | INFO     | current chi2=13.384989246726462 (change=21.71401876252494 %)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,769 | INFO     | right removable region: 638
[2025-11-27 19:49:07] 2025-11-28 00:48:04,769 | INFO     | sum of square deviations: 80905376736.78864
[2025-11-27 19:49:07] 2025-11-28 00:48:04,774 | INFO     | sum of deviations: -111346986379.2671
[2025-11-27 19:49:07] 2025-11-28 00:48:04,774 | INFO     | mean x: 1764271369.0985916
[2025-11-27 19:49:07] 2025-11-28 00:48:04,774 | INFO     | mean y: 2993927.702660407
[2025-11-27 19:49:07] 2025-11-28 00:48:04,774 | INFO     | intersect: 2431093369.6403103
[2025-11-27 19:49:07] 2025-11-28 00:48:04,775 | INFO     | chi2: 14.707808948627399
[2025-11-27 19:49:07] 2025-11-28 00:48:04,775 | INFO     | current chi2=14.707808948627399 (change=13.977125108396224 %)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,775 | INFO     | left removable region: 10
[2025-11-27 19:49:07] 2025-11-28 00:48:04,775 | INFO     | sum of square deviations: 76798882593.41881
[2025-11-27 19:49:07] 2025-11-28 00:48:04,781 | INFO     | sum of deviations: 127815435338.17719
[2025-11-27 19:49:07] 2025-11-28 00:48:04,781 | INFO     | mean x: 1764271338.6098726
[2025-11-27 19:49:07] 2025-11-28 00:48:04,781 | INFO     | mean y: 3020460.5843949043
[2025-11-27 19:49:07] 2025-11-28 00:48:04,781 | INFO     | intersect: -2933234620.0124874
[2025-11-27 19:49:07] 2025-11-28 00:48:04,781 | INFO     | chi2: 9.977293279296534
[2025-11-27 19:49:07] 2025-11-28 00:48:04,781 | INFO     | current memory leak: 1.66 B/s (using 628 data points, chi2=9.98)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | could have reported an average CPU frequency of 3797 MHz (25 samples)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | ..............................
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . Timing measurements:
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . get job = 0 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . initial setup = 2 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . payload setup = 15 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . stage-in = 0 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . payload execution = 39254 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . stage-out = 4 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,782 | INFO     | . log creation = 0 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,783 | INFO     | ..............................
[2025-11-27 19:49:07] 2025-11-28 00:48:04,832 | INFO     | 
[2025-11-27 19:49:07] 2025-11-28 00:48:04,832 | INFO     | job summary report
[2025-11-27 19:49:07] 2025-11-28 00:48:04,832 | INFO     | --------------------------------------------------
[2025-11-27 19:49:07] 2025-11-28 00:48:04,832 | INFO     | PanDA job id: 6898376945
[2025-11-27 19:49:07] 2025-11-28 00:48:04,832 | INFO     | task id: 47556161
[2025-11-27 19:49:07] 2025-11-28 00:48:04,832 | INFO     | errors: (none)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | pilot state: finished 
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | transexitcode: 0
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | exeerrorcode: 0
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | exeerrordiag: 
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | exitcode: 0
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | exitmsg: OK
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | cpuconsumptiontime: 139206 s
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | nevents: 1000
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | neventsw: 0
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | pid: 3297534
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | pgrp: 3297534
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | corecount: 9
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | event service: False
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | sizes: {0: 2284144, 1: 2284343, 9: 2284605, 11: 2284633, 39274: 2326015, 39275: 2326014, 39279: 2335248, 39311: 2335502}
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | --------------------------------------------------
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | 
[2025-11-27 19:49:07] 2025-11-28 00:48:04,833 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 19:49:07] 2025-11-28 00:48:04,850 | INFO     | sufficient remaining disk space (163152134144 B)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,850 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,853 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6898376945: 8860244 B (within 2537553920 B limit)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,853 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6898376945/HITS.47556161._005423.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,853 | INFO     | total size of present files: 0 B (workdir size: 8860244 B)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,853 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6898376945/HITS.47556161._005423.pool.root.1 since it does not exist
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,938 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,938 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,938 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:49:07] 2025-11-28 00:48:04,938 | INFO     | job 6898376945 has completed (purged errors)
[2025-11-27 19:49:07] 2025-11-28 00:48:04,938 | INFO     | overall cleanup function is called
[2025-11-27 19:49:07] 2025-11-28 00:48:05,936 | INFO     | number of running child processes to parent process 3297534: 1
[2025-11-27 19:49:07] 2025-11-28 00:48:05,936 | INFO     | maximum number of monitored processes: 17
[2025-11-27 19:49:07] 2025-11-28 00:48:05,936 | INFO     | aborting job monitoring since job object (job id=6898376945) has expired
[2025-11-27 19:49:07] 2025-11-28 00:48:05,964 | INFO     | --- collectZombieJob: --- 10, [3297534]
[2025-11-27 19:49:07] 2025-11-28 00:48:05,964 | INFO     | zombie collector waiting for pid 3297534
[2025-11-27 19:49:07] 2025-11-28 00:48:05,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:49:07] 2025-11-28 00:48:05,964 | INFO     | collected zombie processes
[2025-11-27 19:49:07] 2025-11-28 00:48:05,964 | INFO     | will attempt to kill all subprocesses of pid=3297534
[2025-11-27 19:49:07] 2025-11-28 00:48:07,163 | INFO     | process IDs to be killed: [3297534] (in reverse order)
[2025-11-27 19:49:07] 2025-11-28 00:48:07,753 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:49:07] 2025-11-28 00:48:07,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:49:07] 2025-11-28 00:48:07,877 | INFO     | did not find any defunct processes belonging to 3297534
[2025-11-27 19:49:07] 2025-11-28 00:48:07,947 | INFO     | did not find any defunct processes belonging to 3297534
[2025-11-27 19:49:07] 2025-11-28 00:48:07,948 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:49:07] 2025-11-28 00:48:07,948 | INFO     | ready for new job
[2025-11-27 19:49:07] 2025-11-28 00:48:07,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:49:07] 2025-11-28 00:48:07,951 | INFO     | ***************************************
[2025-11-27 19:49:07] 2025-11-28 00:48:07,951 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:49:07] 2025-11-28 00:48:07,951 | INFO     | ***************************************
[2025-11-27 19:49:07] 2025-11-28 00:48:07,951 | INFO     | 
[2025-11-27 19:49:07] 2025-11-28 00:48:07,959 | INFO     | architecture information:
[2025-11-27 19:49:07] 2025-11-28 00:48:07,964 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:49:07] 2025-11-28 00:48:08,044 | INFO     | cat /etc/os-release:
[2025-11-27 19:49:07] NAME="CentOS Linux"
[2025-11-27 19:49:07] VERSION="7 (Core)"
[2025-11-27 19:49:07] ID="centos"
[2025-11-27 19:49:07] ID_LIKE="rhel fedora"
[2025-11-27 19:49:07] VERSION_ID="7"
[2025-11-27 19:49:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:49:07] ANSI_COLOR="0;31"
[2025-11-27 19:49:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:49:07] HOME_URL="https://www.centos.org/"
[2025-11-27 19:49:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:49:07] 
[2025-11-27 19:49:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:49:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:49:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:49:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:49:07] 
[2025-11-27 19:49:07] 2025-11-28 00:48:08,045 | INFO     | ***************************************
[2025-11-27 19:49:07] 2025-11-28 00:48:08,548 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 19:49:07] 2025-11-28 00:48:08,599 | INFO     | sufficient remaining disk space (163164717056 B)
[2025-11-27 19:49:07] 2025-11-28 00:48:08,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:49:07] 2025-11-28 00:48:08,600 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:49:07] 2025-11-28 00:48:08,600 | INFO     | update_server=False
[2025-11-27 19:49:07] 2025-11-28 00:48:08,600 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:49:07] 2025-11-28 00:48:08,648 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:49:07] 2025-11-28 00:48:08,691 | INFO     | all job control threads have been joined
[2025-11-27 19:49:07] 2025-11-28 00:48:09,180 | INFO     | all data control threads have been joined
[2025-11-27 19:49:07] 2025-11-28 00:48:09,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:49:07] 2025-11-28 00:48:09,452 | INFO     | aborting loop
[2025-11-27 19:49:07] 2025-11-28 00:48:09,606 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:09,690 | INFO     | all payload control threads have been joined
[2025-11-27 19:49:07] 2025-11-28 00:48:09,697 | INFO     | [job] control thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:09,750 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:09,765 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:09,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:49:07] 2025-11-28 00:48:10,185 | INFO     | [data] control thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,289 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,395 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,395 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,458 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,597 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,655 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,696 | INFO     | [payload] control thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,724 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,795 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:49:07] 2025-11-28 00:48:10,894 | INFO     | [job] validate thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:10,901 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:14,805 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:49:07] 2025-11-28 00:48:37,982 | INFO     | PID=3279758 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 19:49:07] 2025-11-28 00:48:37,983 | INFO     | .. there are 97 such processes running
[2025-11-27 19:49:07] 2025-11-28 00:48:37,983 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:49:07] 2025-11-28 00:48:37,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:49:07] 2025-11-28 00:48:37,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:49:07] 2025-11-28 00:48:40,420 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:49:07] 2025-11-28 00:48:40,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148486158144)>', '<ExcThread(monitor, started 140147819517696)>']
[2025-11-27 19:49:07] 2025-11-28 00:48:41,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:49:07] 2025-11-28 00:48:41,001 | INFO     | [monitor] control thread has ended
[2025-11-27 19:49:07] 2025-11-28 00:48:45,760 | INFO     | all workflow threads have been joined
[2025-11-27 19:49:07] 2025-11-28 00:48:45,760 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:49:07] 2025-11-28 00:48:45,760 | INFO     | traces error code: 0
[2025-11-27 19:49:07] 2025-11-28 00:48:45,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:49:07] 2025-11-28 00:48:45,954 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:49:07] 2025-11-28 00:48:45,983 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:49:07] 2025-11-28 00:48:46,009 [wrapper] pilotpid: 3279758
[2025-11-27 19:49:07] 2025-11-28 00:48:46,032 [wrapper] Pilot exit status: 0
[2025-11-27 19:49:07] 2025-11-28 00:48:46,183 [wrapper] pandaids: 6898376945
[2025-11-27 19:49:07] 2025-11-28 00:48:46,964 [wrapper] cleanup supervisor_pilot  152491 3279759
[2025-11-27 19:49:07] 2025-11-28 00:48:46,982 [wrapper] Test setup, not cleaning
[2025-11-27 19:49:07] 2025-11-28 00:48:47,002 [wrapper] apfmon messages muted
[2025-11-27 19:49:07] 2025-11-28 00:48:47,025 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:49:07] 2025-11-28 00:48:47,044 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:49:07]  *** Error codes and diagnostics ***
[2025-11-27 19:49:07]     "exeErrorCode": 0,
[2025-11-27 19:49:07]     "exeErrorDiag": "",
[2025-11-27 19:49:07]     "pilotErrorCode": 0,
[2025-11-27 19:49:07]     "pilotErrorDiag": "",
[2025-11-27 19:49:07]  *** Listing of results directory ***
[2025-11-27 19:49:07] total 1314516
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:56 queuedata.json
[2025-11-27 19:49:07] -rwx------. 1 boincer umatlas     36292 Nov 26 10:57 runpilot2-wrapper.sh
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:57 pilot3.tar.gz
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:49:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:52 run_atlas
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:52 job.xml
[2025-11-27 19:49:07] -rw-r--r--. 2 boincer umatlas 409066968 Nov 27 08:52 EVNT.47483658._002560.pool.root.1
[2025-11-27 19:49:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:52 start_atlas.sh
[2025-11-27 19:49:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:52 shared
[2025-11-27 19:49:07] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 08:52 input.tar.gz
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:52 boinc_lockfile
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 08:52 pandaJob.out
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas        57 Nov 27 08:52 setup.sh.local
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas    991588 Nov 27 08:52 agis_schedconf.cvmfs.json
[2025-11-27 19:49:07] drwx------. 5 boincer umatlas      4096 Nov 27 08:52 pilot3
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas       533 Nov 27 19:25 boinc_task_state.xml
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 19:37 init_data.xml
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas 919993514 Nov 27 19:46 HITS.47556161._005423.pool.root.1
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas      1052 Nov 27 19:47 memory_monitor_summary.json
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:47 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas   1946469 Nov 27 19:47 log.47556161._005423.job.log.tgz.1
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas      7909 Nov 27 19:48 heartbeat.json
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas        95 Nov 27 19:48 pilot_heartbeat.json
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas      4825 Nov 27 19:48 pilotlog.txt
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas   4602495 Nov 27 19:48 log.47556161._005423.job.log.1
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas       353 Nov 27 19:48 output.list
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:48 runtime_log
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas   6563840 Nov 27 19:48 result.tar.gz
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 19:48 runtime_log.err
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas       659 Nov 27 19:48 MABLDmy4Wi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmx6MKDmHUg8Dn.diag
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:49 wrapper_checkpoint.txt
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:49 boinc_mmap_file
[2025-11-27 19:49:07] -rw-r--r--. 1 boincer umatlas     16376 Nov 27 19:49 stderr.txt
[2025-11-27 19:49:07] HITS file was successfully produced:
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas 919993514 Nov 27 19:46 shared/HITS.pool.root.1
[2025-11-27 19:49:07]  *** Contents of shared directory: ***
[2025-11-27 19:49:07] total 1304928
[2025-11-27 19:49:07] -rw-r--r--. 2 boincer umatlas 409066968 Nov 27 08:52 ATLAS.root_0
[2025-11-27 19:49:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:52 start_atlas.sh
[2025-11-27 19:49:07] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 08:52 input.tar.gz
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas 919993514 Nov 27 19:46 HITS.pool.root.1
[2025-11-27 19:49:07] -rw-------. 1 boincer umatlas   6563840 Nov 27 19:48 result.tar.gz
19:49:08 (3263534): run_atlas exited; CPU time 140006.685355
19:49:08 (3263534): called boinc_finish(0)

</stderr_txt>
]]>

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