Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:19:10 (363046): wrapper (7.7.26015): starting
08:19:10 (363046): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:19:10] Arguments: --nthreads 8
[2025-11-27 08:19:10] Threads: 8
[2025-11-27 08:19:10] Checking for CVMFS
[2025-11-27 08:19:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:19:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:19:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:19:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:19:11] 2.13.2.0 7528 34401 166124 153364 2 375 38554411 40960000 21736 16776704 0 76696188 99.773 48113519 43205 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 08:19:11] CVMFS is ok
[2025-11-27 08:19:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:19:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:19:11] Further information can be found at the LHC@home message board.
[2025-11-27 08:19:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:19:11] Checking for apptainer binary...
[2025-11-27 08:19:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:19:11] Running /usr/bin/apptainer --version
[2025-11-27 08:19:11] apptainer version 1.4.4-1.el9
[2025-11-27 08:19:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:19:11] c-212-9.aglt2.org
[2025-11-27 08:19:11] apptainer works
[2025-11-27 08:19:11] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:19:11] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:19:11] Starting ATLAS job with PandaID=6898762761
[2025-11-27 08:19:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:55:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:55:07] 2025-11-28 03:54:22,449 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-27 22:55:07] 2025-11-28 03:54:22,449 | INFO     | log transfer has been attempted: DONE
[2025-11-27 22:55:07] 2025-11-28 03:54:22,449 | INFO     | job 6898762761 has finished - writing final server update
[2025-11-27 22:55:07] 2025-11-28 03:54:22,449 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 22:55:07] 2025-11-28 03:54:22,476 | INFO     | executing command: lscpu
[2025-11-27 22:55:07] 2025-11-28 03:54:22,651 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 22:55:07] 2025-11-28 03:54:22,837 | INFO     | monitor loop #3424: job 0:6898762761 is in state 'finished'
[2025-11-27 22:55:07] 2025-11-28 03:54:22,838 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:07] 2025-11-28 03:54:23,509 | INFO     | time since job start (52492s) is within the limit (172800.0s)
[2025-11-27 22:55:07] 2025-11-28 03:54:25,342 | INFO     | monitor loop #3425: job 0:6898762761 is in state 'finished'
[2025-11-27 22:55:07] 2025-11-28 03:54:25,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:07] 2025-11-28 03:54:25,516 | INFO     | time since job start (52494s) is within the limit (172800.0s)
[2025-11-27 22:55:07] 2025-11-28 03:54:27,522 | INFO     | time since job start (52496s) is within the limit (172800.0s)
[2025-11-27 22:55:07] 2025-11-28 03:54:27,847 | INFO     | monitor loop #3426: job 0:6898762761 is in state 'finished'
[2025-11-27 22:55:07] 2025-11-28 03:54:27,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:55:07] 2025-11-28 03:54:29,538 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:55:07] 2025-11-28 03:54:29,544 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2957.872208333334
[2025-11-27 22:55:07] 2025-11-28 03:54:29,694 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6898762761/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:55:07] 2025-11-28 03:54:29,696 | INFO     | extracted standard info from prmon json
[2025-11-27 22:55:07] 2025-11-28 03:54:29,696 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:55:07] 2025-11-28 03:54:29,696 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:55:07] 2025-11-28 03:54:29,744 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:55:07] 2025-11-28 03:54:29,745 | INFO     | sum of square deviations: 197244570991.60345
[2025-11-27 22:55:07] 2025-11-28 03:54:29,796 | INFO     | sum of deviations: 977519252289.6504
[2025-11-27 22:55:07] 2025-11-28 03:54:29,796 | INFO     | mean x: 1764275810.6151164
[2025-11-27 22:55:07] 2025-11-28 03:54:29,797 | INFO     | mean y: 2895808.15
[2025-11-27 22:55:07] 2025-11-28 03:54:29,797 | INFO     | intersect: -8740632911.322947
[2025-11-27 22:55:07] 2025-11-28 03:54:29,798 | INFO     | chi2: 16.170670398194346
[2025-11-27 22:55:07] 2025-11-28 03:54:29,799 | INFO     | sum of square deviations: 193824762145.3494
[2025-11-27 22:55:07] 2025-11-28 03:54:29,858 | INFO     | sum of deviations: 1260007985226.8784
[2025-11-27 22:55:07] 2025-11-28 03:54:29,858 | INFO     | mean x: 1764275658.1216373
[2025-11-27 22:55:07] 2025-11-28 03:54:29,858 | INFO     | mean y: 2908407.8280701754
[2025-11-27 22:55:07] 2025-11-28 03:54:29,859 | INFO     | intersect: -11466221711.406324
[2025-11-27 22:55:07] 2025-11-28 03:54:29,860 | INFO     | chi2: 12.915442428036624
[2025-11-27 22:55:07] 2025-11-28 03:54:29,861 | INFO     | current chi2=12.915442428036624 (change=20.130445368060986 %)
[2025-11-27 22:55:07] 2025-11-28 03:54:29,861 | INFO     | right removable region: 854
[2025-11-27 22:55:07] 2025-11-28 03:54:29,862 | INFO     | sum of square deviations: 193824177155.34943
[2025-11-27 22:55:07] 2025-11-28 03:54:29,903 | INFO     | sum of deviations: 699309928559.7999
[2025-11-27 22:55:07] 2025-11-28 03:54:29,904 | INFO     | mean x: 1764275963.1216373
[2025-11-27 22:55:07] 2025-11-28 03:54:29,904 | INFO     | mean y: 2908203.8865497075
[2025-11-27 22:55:07] 2025-11-28 03:54:29,904 | INFO     | intersect: -6362529358.329939
[2025-11-27 22:55:07] 2025-11-28 03:54:29,905 | INFO     | chi2: 13.549000394588072
[2025-11-27 22:55:07] 2025-11-28 03:54:29,905 | INFO     | current chi2=13.549000394588072 (change=16.212500403811433 %)
[2025-11-27 22:55:07] 2025-11-28 03:54:29,905 | INFO     | left removable region: 10
[2025-11-27 22:55:07] 2025-11-28 03:54:29,906 | INFO     | sum of square deviations: 186439772855.87045
[2025-11-27 22:55:07] 2025-11-28 03:54:29,922 | INFO     | sum of deviations: 979669825543.149
[2025-11-27 22:55:07] 2025-11-28 03:54:29,922 | INFO     | mean x: 1764275932.6338863
[2025-11-27 22:55:07] 2025-11-28 03:54:29,923 | INFO     | mean y: 2927227.680094787
[2025-11-27 22:55:07] 2025-11-28 03:54:29,923 | INFO     | intersect: -9267669215.65275
[2025-11-27 22:55:07] 2025-11-28 03:54:29,923 | INFO     | chi2: 9.300684288165261
[2025-11-27 22:55:07] 2025-11-28 03:54:29,924 | INFO     | current memory leak: 5.25 B/s (using 844 data points, chi2=9.30)
[2025-11-27 22:55:07] 2025-11-28 03:54:29,925 | INFO     | could have reported an average CPU frequency of 3003 MHz (32 samples)
[2025-11-27 22:55:07] 2025-11-28 03:54:29,925 | INFO     | ..............................
[2025-11-27 22:55:07] 2025-11-28 03:54:29,925 | INFO     | . Timing measurements:
[2025-11-27 22:55:07] 2025-11-28 03:54:29,925 | INFO     | . get job = 0 s
[2025-11-27 22:55:07] 2025-11-28 03:54:29,925 | INFO     | . initial setup = 2 s
[2025-11-27 22:55:07] 2025-11-28 03:54:29,925 | INFO     | . payload setup = 11 s
[2025-11-27 22:55:07] 2025-11-28 03:54:29,932 | INFO     | . stage-in = 0 s
[2025-11-27 22:55:07] 2025-11-28 03:54:29,932 | INFO     | . payload execution = 52448 s
[2025-11-27 22:55:07] 2025-11-28 03:54:29,932 | INFO     | . stage-out = 5 s
[2025-11-27 22:55:07] 2025-11-28 03:54:29,932 | INFO     | . log creation = 1 s
[2025-11-27 22:55:07] 2025-11-28 03:54:29,933 | INFO     | ..............................
[2025-11-27 22:55:07] 2025-11-28 03:54:30,053 | INFO     | 
[2025-11-27 22:55:07] 2025-11-28 03:54:30,104 | INFO     | job summary report
[2025-11-27 22:55:07] 2025-11-28 03:54:30,104 | INFO     | --------------------------------------------------
[2025-11-27 22:55:07] 2025-11-28 03:54:30,104 | INFO     | PanDA job id: 6898762761
[2025-11-27 22:55:07] 2025-11-28 03:54:30,104 | INFO     | task id: 47556161
[2025-11-27 22:55:07] 2025-11-28 03:54:30,104 | INFO     | errors: (none)
[2025-11-27 22:55:07] 2025-11-28 03:54:30,104 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:55:07] 2025-11-28 03:54:30,104 | INFO     | pilot state: finished 
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | transexitcode: 0
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | exeerrorcode: 0
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | exeerrordiag: 
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | exitcode: 0
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | exitmsg: OK
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | cpuconsumptiontime: 210575 s
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | nevents: 1000
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | neventsw: 0
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | pid: 376509
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | pgrp: 376509
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | corecount: 8
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | event service: False
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | sizes: {0: 2284138, 1: 2284337, 8: 2284599, 11: 2284627, 52463: 2334063, 52464: 2334062, 52470: 2343240, 52472: 2343296, 52480: 2343542}
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | --------------------------------------------------
[2025-11-27 22:55:07] 2025-11-28 03:54:30,105 | INFO     | 
[2025-11-27 22:55:07] 2025-11-28 03:54:30,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 22:55:07] 2025-11-28 03:54:30,206 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,209 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,212 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,212 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,215 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,225 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,225 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,226 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:55:07] 2025-11-28 03:54:30,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,226 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:55:07] 2025-11-28 03:54:30,226 | INFO     | job 6898762761 has completed (purged errors)
[2025-11-27 22:55:07] 2025-11-28 03:54:30,226 | INFO     | overall cleanup function is called
[2025-11-27 22:55:07] 2025-11-28 03:54:30,624 | INFO     | PID=366741 has CPU usage=15.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:55:07] 2025-11-28 03:54:30,624 | INFO     | .. there are 19 such processes running
[2025-11-27 22:55:07] 2025-11-28 03:54:31,372 | INFO     | --- collectZombieJob: --- 10, [376509]
[2025-11-27 22:55:07] 2025-11-28 03:54:31,373 | INFO     | zombie collector waiting for pid 376509
[2025-11-27 22:55:07] 2025-11-28 03:54:31,373 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:55:07] 2025-11-28 03:54:31,373 | INFO     | collected zombie processes
[2025-11-27 22:55:07] 2025-11-28 03:54:31,373 | INFO     | will attempt to kill all subprocesses of pid=376509
[2025-11-27 22:55:07] 2025-11-28 03:54:32,585 | INFO     | process IDs to be killed: [376509] (in reverse order)
[2025-11-27 22:55:07] 2025-11-28 03:54:32,810 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:55:07] 2025-11-28 03:54:32,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:55:07] 2025-11-28 03:54:32,880 | INFO     | did not find any defunct processes belonging to 376509
[2025-11-27 22:55:07] 2025-11-28 03:54:32,978 | INFO     | did not find any defunct processes belonging to 376509
[2025-11-27 22:55:07] 2025-11-28 03:54:33,004 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:55:07] 2025-11-28 03:54:33,004 | INFO     | ready for new job
[2025-11-27 22:55:07] 2025-11-28 03:54:33,004 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:55:07] 2025-11-28 03:54:33,025 | INFO     | ***************************************
[2025-11-27 22:55:07] 2025-11-28 03:54:33,025 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:55:07] 2025-11-28 03:54:33,025 | INFO     | ***************************************
[2025-11-27 22:55:07] 2025-11-28 03:54:33,025 | INFO     | 
[2025-11-27 22:55:07] 2025-11-28 03:54:33,048 | INFO     | architecture information:
[2025-11-27 22:55:07] 2025-11-28 03:54:33,070 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:55:07] 2025-11-28 03:54:33,185 | INFO     | cat /etc/os-release:
[2025-11-27 22:55:07] NAME="CentOS Linux"
[2025-11-27 22:55:07] VERSION="7 (Core)"
[2025-11-27 22:55:07] ID="centos"
[2025-11-27 22:55:07] ID_LIKE="rhel fedora"
[2025-11-27 22:55:07] VERSION_ID="7"
[2025-11-27 22:55:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:55:07] ANSI_COLOR="0;31"
[2025-11-27 22:55:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:55:07] HOME_URL="https://www.centos.org/"
[2025-11-27 22:55:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:55:07] 
[2025-11-27 22:55:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:55:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:55:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:55:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:55:07] 
[2025-11-27 22:55:07] 2025-11-28 03:54:33,186 | INFO     | ***************************************
[2025-11-27 22:55:07] 2025-11-28 03:54:33,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 22:55:07] 2025-11-28 03:54:33,742 | INFO     | sufficient remaining disk space (120156323840 B)
[2025-11-27 22:55:07] 2025-11-28 03:54:33,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:55:07] 2025-11-28 03:54:33,742 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:55:07] 2025-11-28 03:54:33,742 | INFO     | update_server=False
[2025-11-27 22:55:07] 2025-11-28 03:54:33,743 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:55:07] 2025-11-28 03:54:33,743 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:55:07] 2025-11-28 03:54:33,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:55:07] 2025-11-28 03:54:33,865 | INFO     | all payload control threads have been joined
[2025-11-27 22:55:07] 2025-11-28 03:54:33,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:55:07] 2025-11-28 03:54:33,955 | INFO     | aborting loop
[2025-11-27 22:55:07] 2025-11-28 03:54:34,091 | INFO     | all data control threads have been joined
[2025-11-27 22:55:07] 2025-11-28 03:54:34,748 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:34,848 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:34,871 | INFO     | [payload] control thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:34,960 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:35,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:55:07] 2025-11-28 03:54:35,097 | INFO     | [data] control thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:35,109 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:35,282 | INFO     | all job control threads have been joined
[2025-11-27 22:55:07] 2025-11-28 03:54:35,627 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:35,628 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:35,719 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:35,750 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:36,076 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:36,077 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:36,082 | INFO     | [job] validate thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:36,109 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:36,292 | INFO     | [job] control thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:54:37,752 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:55:07] 2025-11-28 03:55:01,470 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:55:07] 2025-11-28 03:55:02,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628137117504)>', '<ExcThread(monitor, started 140627421423360)>']
[2025-11-27 22:55:07] 2025-11-28 03:55:03,633 | INFO     | PID=366741 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 22:55:07] 2025-11-28 03:55:03,633 | INFO     | .. there are 19 such processes running
[2025-11-27 22:55:07] 2025-11-28 03:55:03,633 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:55:07] 2025-11-28 03:55:03,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:55:07] 2025-11-28 03:55:03,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:55:07] 2025-11-28 03:55:03,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:55:07] 2025-11-28 03:55:03,634 | INFO     | [monitor] control thread has ended
[2025-11-27 22:55:07] 2025-11-28 03:55:07,328 | INFO     | all workflow threads have been joined
[2025-11-27 22:55:07] 2025-11-28 03:55:07,329 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:55:07] 2025-11-28 03:55:07,329 | INFO     | traces error code: 0
[2025-11-27 22:55:07] 2025-11-28 03:55:07,329 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:55:07] 2025-11-28 03:55:07,532 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:55:07] 2025-11-28 03:55:07,537 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:55:07] 2025-11-28 03:55:07,540 [wrapper] pilotpid: 366741
[2025-11-27 22:55:07] 2025-11-28 03:55:07,544 [wrapper] Pilot exit status: 0
[2025-11-27 22:55:07] 2025-11-28 03:55:07,567 [wrapper] pandaids: 6898762761
[2025-11-27 22:55:07] 2025-11-28 03:55:07,690 [wrapper] cleanup supervisor_pilot 1505895 366742
[2025-11-27 22:55:07] 2025-11-28 03:55:07,694 [wrapper] Test setup, not cleaning
[2025-11-27 22:55:07] 2025-11-28 03:55:07,698 [wrapper] apfmon messages muted
[2025-11-27 22:55:07] 2025-11-28 03:55:07,703 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:55:07] 2025-11-28 03:55:07,708 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:55:07]  *** Error codes and diagnostics ***
[2025-11-27 22:55:07]     "exeErrorCode": 0,
[2025-11-27 22:55:07]     "exeErrorDiag": "",
[2025-11-27 22:55:07]     "pilotErrorCode": 0,
[2025-11-27 22:55:07]     "pilotErrorDiag": "",
[2025-11-27 22:55:07]  *** Listing of results directory ***
[2025-11-27 22:55:07] total 1321244
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 19:01 pilot3.tar.gz
[2025-11-27 22:55:07] -rwx------. 1 boincer umatlas     36292 Nov 26 19:09 runpilot2-wrapper.sh
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 19:09 queuedata.json
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:55:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:19 run_atlas
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:19 job.xml
[2025-11-27 22:55:07] -rw-r--r--. 2 boincer umatlas 410924967 Nov 27 08:19 EVNT.47483658._002752.pool.root.1
[2025-11-27 22:55:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:19 shared
[2025-11-27 22:55:07] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 08:19 input.tar.gz
[2025-11-27 22:55:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:19 start_atlas.sh
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:19 boinc_lockfile
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 08:19 pandaJob.out
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas        57 Nov 27 08:19 setup.sh.local
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas    991566 Nov 27 08:19 agis_schedconf.cvmfs.json
[2025-11-27 22:55:07] drwx------. 5 boincer umatlas      4096 Nov 27 08:19 pilot3
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas       533 Nov 27 22:31 boinc_task_state.xml
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 22:48 init_data.xml
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas 920098862 Nov 27 22:53 HITS.47556161._007341.pool.root.1
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas      1061 Nov 27 22:54 memory_monitor_summary.json
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas        95 Nov 27 22:54 pilot_heartbeat.json
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:54 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas   2049424 Nov 27 22:54 log.47556161._007341.job.log.tgz.1
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas      8588 Nov 27 22:54 heartbeat.json
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:55 wrapper_checkpoint.txt
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:55 boinc_mmap_file
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas      4824 Nov 27 22:55 pilotlog.txt
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas   6951104 Nov 27 22:55 log.47556161._007341.job.log.1
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas       353 Nov 27 22:55 output.list
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:55 runtime_log
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas   9021440 Nov 27 22:55 result.tar.gz
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 22:55 runtime_log.err
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas       663 Nov 27 22:55 B6MLDmRkei8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFSNKDm8rbodn.diag
[2025-11-27 22:55:07] -rw-r--r--. 1 boincer umatlas     21852 Nov 27 22:55 stderr.txt
[2025-11-27 22:55:07] HITS file was successfully produced:
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas 920098862 Nov 27 22:53 shared/HITS.pool.root.1
[2025-11-27 22:55:07]  *** Contents of shared directory: ***
[2025-11-27 22:55:07] total 1309248
[2025-11-27 22:55:07] -rw-r--r--. 2 boincer umatlas 410924967 Nov 27 08:19 ATLAS.root_0
[2025-11-27 22:55:07] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 08:19 input.tar.gz
[2025-11-27 22:55:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:19 start_atlas.sh
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas 920098862 Nov 27 22:53 HITS.pool.root.1
[2025-11-27 22:55:07] -rw-------. 1 boincer umatlas   9021440 Nov 27 22:55 result.tar.gz
22:55:09 (363046): run_atlas exited; CPU time 211297.449637
22:55:09 (363046): called boinc_finish(0)

</stderr_txt>
]]>

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