Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:47:42 (2206301): wrapper (7.7.26015): starting
08:47:42 (2206301): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:47:42] Arguments: --nthreads 8
[2025-11-27 08:47:42] Threads: 8
[2025-11-27 08:47:42] Checking for CVMFS
[2025-11-27 08:47:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:47:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:47:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:47:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:47:43] 2.13.3.0 11285 31524 325412 153366 1 158 18278450 32935936 49493 16776704 0 232613601 99.613 243182133 37790 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 08:47:43] CVMFS is ok
[2025-11-27 08:47:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:47:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:47:43] Further information can be found at the LHC@home message board.
[2025-11-27 08:47:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:47:43] Checking for apptainer binary...
[2025-11-27 08:47:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:47:43] Running /usr/bin/apptainer --version
[2025-11-27 08:47:43] apptainer version 1.4.4-1.el9
[2025-11-27 08:47:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:47:44] c7-3-29.aglt2.org
[2025-11-27 08:47:44] apptainer works
[2025-11-27 08:47:44] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:47:44] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:47:44] Starting ATLAS job with PandaID=6897998852
[2025-11-27 08:47:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:01:50]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:01:50] 2025-11-28 03:01:03,602 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 22:01:50] 2025-11-28 03:01:03,602 | INFO     | executing command: lscpu
[2025-11-27 22:01:50] 2025-11-28 03:01:03,677 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 22:01:50] 2025-11-28 03:01:04,919 | INFO     | monitor loop #2566: job 0:6897998852 is in state 'finished'
[2025-11-27 22:01:50] 2025-11-28 03:01:04,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:01:50] 2025-11-28 03:01:05,001 | INFO     | time since job start (47574s) is within the limit (172800.0s)
[2025-11-27 22:01:50] 2025-11-28 03:01:07,007 | INFO     | time since job start (47576s) is within the limit (172800.0s)
[2025-11-27 22:01:50] 2025-11-28 03:01:07,436 | INFO     | monitor loop #2567: job 0:6897998852 is in state 'finished'
[2025-11-27 22:01:50] 2025-11-28 03:01:07,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:01:50] 2025-11-28 03:01:09,040 | INFO     | time since job start (47578s) is within the limit (172800.0s)
[2025-11-27 22:01:50] 2025-11-28 03:01:09,955 | INFO     | monitor loop #2568: job 0:6897998852 is in state 'finished'
[2025-11-27 22:01:50] 2025-11-28 03:01:09,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:01:50] 2025-11-28 03:01:11,047 | INFO     | time since job start (47580s) is within the limit (172800.0s)
[2025-11-27 22:01:50] 2025-11-28 03:01:12,465 | INFO     | monitor loop #2569: job 0:6897998852 is in state 'finished'
[2025-11-27 22:01:50] 2025-11-28 03:01:12,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:01:50] 2025-11-28 03:01:13,054 | INFO     | time since job start (47582s) is within the limit (172800.0s)
[2025-11-27 22:01:50] 2025-11-28 03:01:14,738 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:01:50] 2025-11-28 03:01:14,743 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3158.2144791666665
[2025-11-27 22:01:50] 2025-11-28 03:01:14,759 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897998852/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:01:50] 2025-11-28 03:01:14,759 | INFO     | extracted standard info from prmon json
[2025-11-27 22:01:50] 2025-11-28 03:01:14,759 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:01:50] 2025-11-28 03:01:14,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:01:50] 2025-11-28 03:01:14,771 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:01:50] 2025-11-28 03:01:14,772 | INFO     | sum of square deviations: 146581576638.0128
[2025-11-27 22:01:50] 2025-11-28 03:01:14,786 | INFO     | sum of deviations: 9791109009117.727
[2025-11-27 22:01:50] 2025-11-28 03:01:14,786 | INFO     | mean x: 1764275090.711168
[2025-11-27 22:01:50] 2025-11-28 03:01:14,786 | INFO     | mean y: 4159170.709884467
[2025-11-27 22:01:50] 2025-11-28 03:01:14,786 | INFO     | intersect: -117842913643.10794
[2025-11-27 22:01:50] 2025-11-28 03:01:14,791 | INFO     | chi2: 28.357856581010083
[2025-11-27 22:01:50] 2025-11-28 03:01:14,792 | INFO     | sum of square deviations: 143777255812.9677
[2025-11-27 22:01:50] 2025-11-28 03:01:14,811 | INFO     | sum of deviations: 10208241916325.29
[2025-11-27 22:01:50] 2025-11-28 03:01:14,812 | INFO     | mean x: 1764274938.2157624
[2025-11-27 22:01:50] 2025-11-28 03:01:14,812 | INFO     | mean y: 4181850.8785529714
[2025-11-27 22:01:50] 2025-11-28 03:01:14,812 | INFO     | intersect: -125260035179.69829
[2025-11-27 22:01:50] 2025-11-28 03:01:14,817 | INFO     | chi2: 23.413476712333814
[2025-11-27 22:01:50] 2025-11-28 03:01:14,818 | INFO     | current chi2=23.413476712333814 (change=17.43566145259119 %)
[2025-11-27 22:01:50] 2025-11-28 03:01:14,818 | INFO     | right removable region: 773
[2025-11-27 22:01:50] 2025-11-28 03:01:14,818 | INFO     | sum of square deviations: 143776917872.96768
[2025-11-27 22:01:50] 2025-11-28 03:01:14,843 | INFO     | sum of deviations: 9356263434075.105
[2025-11-27 22:01:50] 2025-11-28 03:01:14,843 | INFO     | mean x: 1764275243.2157624
[2025-11-27 22:01:50] 2025-11-28 03:01:14,843 | INFO     | mean y: 4182809.7299741604
[2025-11-27 22:01:50] 2025-11-28 03:01:14,843 | INFO     | intersect: -114805789402.4173
[2025-11-27 22:01:50] 2025-11-28 03:01:14,844 | INFO     | chi2: 25.256983521423127
[2025-11-27 22:01:50] 2025-11-28 03:01:14,844 | INFO     | current chi2=25.256983521423127 (change=10.934793505033324 %)
[2025-11-27 22:01:50] 2025-11-28 03:01:14,844 | INFO     | left removable region: 10
[2025-11-27 22:01:50] 2025-11-28 03:01:14,845 | INFO     | sum of square deviations: 137733562496.65012
[2025-11-27 22:01:50] 2025-11-28 03:01:14,869 | INFO     | sum of deviations: 9634134642840.695
[2025-11-27 22:01:50] 2025-11-28 03:01:14,872 | INFO     | mean x: 1764275212.72346
[2025-11-27 22:01:50] 2025-11-28 03:01:14,873 | INFO     | mean y: 4224137.022280471
[2025-11-27 22:01:50] 2025-11-28 03:01:14,873 | INFO     | intersect: -123402624842.27151
[2025-11-27 22:01:50] 2025-11-28 03:01:14,873 | INFO     | chi2: 18.94607967914915
[2025-11-27 22:01:50] 2025-11-28 03:01:14,874 | INFO     | current memory leak: 69.95 B/s (using 763 data points, chi2=18.95)
[2025-11-27 22:01:50] 2025-11-28 03:01:14,874 | INFO     | could have reported an average CPU frequency of 3176 MHz (30 samples)
[2025-11-27 22:01:50] 2025-11-28 03:01:14,874 | INFO     | ..............................
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . Timing measurements:
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . get job = 0 s
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . initial setup = 4 s
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . payload setup = 21 s
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . stage-in = 0 s
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . payload execution = 47496 s
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . stage-out = 5 s
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | . log creation = 1 s
[2025-11-27 22:01:50] 2025-11-28 03:01:14,875 | INFO     | ..............................
[2025-11-27 22:01:50] 2025-11-28 03:01:15,061 | INFO     | time since job start (47584s) is within the limit (172800.0s)
[2025-11-27 22:01:50] 2025-11-28 03:01:15,139 | INFO     | 
[2025-11-27 22:01:50] 2025-11-28 03:01:15,140 | INFO     | job summary report
[2025-11-27 22:01:50] 2025-11-28 03:01:15,140 | INFO     | --------------------------------------------------
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | PanDA job id: 6897998852
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | task id: 47556161
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | errors: (none)
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | pilot state: finished 
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | transexitcode: 0
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | exeerrorcode: 0
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | exeerrordiag: 
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | exitcode: 0
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | exitmsg: OK
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | cpuconsumptiontime: 189752 s
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | nevents: 1000
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | neventsw: 0
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | pid: 2219706
[2025-11-27 22:01:50] 2025-11-28 03:01:15,141 | INFO     | pgrp: 2219706
[2025-11-27 22:01:50] 2025-11-28 03:01:15,142 | INFO     | corecount: 8
[2025-11-27 22:01:50] 2025-11-28 03:01:15,142 | INFO     | event service: False
[2025-11-27 22:01:50] 2025-11-28 03:01:15,142 | INFO     | sizes: {0: 2284149, 1: 2284291, 12: 2284581, 22: 2284581, 47522: 2331068, 47529: 2340062, 47531: 2340246, 47545: 2340492}
[2025-11-27 22:01:50] 2025-11-28 03:01:15,142 | INFO     | --------------------------------------------------
[2025-11-27 22:01:50] 2025-11-28 03:01:15,142 | INFO     | 
[2025-11-27 22:01:50] 2025-11-28 03:01:15,142 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 22:01:50] 2025-11-28 03:01:15,214 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | job 6897998852 has completed (purged errors)
[2025-11-27 22:01:50] 2025-11-28 03:01:15,216 | INFO     | overall cleanup function is called
[2025-11-27 22:01:50] 2025-11-28 03:01:16,270 | INFO     | --- collectZombieJob: --- 10, [2219706]
[2025-11-27 22:01:50] 2025-11-28 03:01:16,271 | INFO     | zombie collector waiting for pid 2219706
[2025-11-27 22:01:50] 2025-11-28 03:01:16,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:01:50] 2025-11-28 03:01:16,271 | INFO     | collected zombie processes
[2025-11-27 22:01:50] 2025-11-28 03:01:16,271 | INFO     | will attempt to kill all subprocesses of pid=2219706
[2025-11-27 22:01:50] 2025-11-28 03:01:17,760 | INFO     | process IDs to be killed: [2219706] (in reverse order)
[2025-11-27 22:01:50] 2025-11-28 03:01:18,045 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:01:50] 2025-11-28 03:01:18,048 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:01:50] 2025-11-28 03:01:18,109 | INFO     | did not find any defunct processes belonging to 2219706
[2025-11-27 22:01:50] 2025-11-28 03:01:18,188 | INFO     | did not find any defunct processes belonging to 2219706
[2025-11-27 22:01:50] 2025-11-28 03:01:18,192 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:01:50] 2025-11-28 03:01:18,193 | INFO     | ready for new job
[2025-11-27 22:01:50] 2025-11-28 03:01:18,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:01:50] 2025-11-28 03:01:18,202 | INFO     | ***************************************
[2025-11-27 22:01:50] 2025-11-28 03:01:18,202 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:01:50] 2025-11-28 03:01:18,203 | INFO     | ***************************************
[2025-11-27 22:01:50] 2025-11-28 03:01:18,203 | INFO     | 
[2025-11-27 22:01:50] 2025-11-28 03:01:18,215 | INFO     | architecture information:
[2025-11-27 22:01:50] 2025-11-28 03:01:18,217 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:01:50] 2025-11-28 03:01:18,257 | INFO     | cat /etc/os-release:
[2025-11-27 22:01:50] NAME="CentOS Linux"
[2025-11-27 22:01:50] VERSION="7 (Core)"
[2025-11-27 22:01:50] ID="centos"
[2025-11-27 22:01:50] ID_LIKE="rhel fedora"
[2025-11-27 22:01:50] VERSION_ID="7"
[2025-11-27 22:01:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:01:50] ANSI_COLOR="0;31"
[2025-11-27 22:01:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:01:50] HOME_URL="https://www.centos.org/"
[2025-11-27 22:01:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:01:50] 
[2025-11-27 22:01:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:01:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:01:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:01:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:01:50] 
[2025-11-27 22:01:50] 2025-11-28 03:01:18,257 | INFO     | ***************************************
[2025-11-27 22:01:50] 2025-11-28 03:01:18,759 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 22:01:50] 2025-11-28 03:01:18,821 | INFO     | sufficient remaining disk space (67480059904 B)
[2025-11-27 22:01:50] 2025-11-28 03:01:18,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:01:50] 2025-11-28 03:01:18,821 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:01:50] 2025-11-28 03:01:18,821 | INFO     | update_server=False
[2025-11-27 22:01:50] 2025-11-28 03:01:18,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:01:50] 2025-11-28 03:01:18,822 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:01:50] 2025-11-28 03:01:18,822 | INFO     | aborting loop
[2025-11-27 22:01:50] 2025-11-28 03:01:18,938 | INFO     | all data control threads have been joined
[2025-11-27 22:01:50] 2025-11-28 03:01:19,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:01:50] 2025-11-28 03:01:19,462 | INFO     | all payload control threads have been joined
[2025-11-27 22:01:50] 2025-11-28 03:01:19,833 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:19,834 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:19,944 | INFO     | [data] control thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:20,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:01:50] 2025-11-28 03:01:20,155 | INFO     | [job] validate thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:20,156 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:20,472 | INFO     | all job control threads have been joined
[2025-11-27 22:01:50] 2025-11-28 03:01:20,473 | INFO     | [payload] control thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:20,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:20,509 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:20,522 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:20,948 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:01:50] 2025-11-28 03:01:21,011 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:21,038 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:21,039 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:21,145 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:21,211 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:21,479 | INFO     | [job] control thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:24,964 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:01:50] 2025-11-28 03:01:35,035 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:01:50] 2025-11-28 03:01:35,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140234927798080)>', '<ExcThread(monitor, started 140233702110976)>']
[2025-11-27 22:01:50] 2025-11-28 03:01:40,894 | INFO     | all workflow threads have been joined
[2025-11-27 22:01:50] 2025-11-28 03:01:40,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:01:50] 2025-11-28 03:01:40,895 | INFO     | traces error code: 0
[2025-11-27 22:01:50] 2025-11-28 03:01:40,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:01:50] 2025-11-28 03:01:49,825 | INFO     | PID=2210121 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:01:50] 2025-11-28 03:01:49,826 | INFO     | .. there are 75 such processes running
[2025-11-27 22:01:50] 2025-11-28 03:01:49,826 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:01:50] 2025-11-28 03:01:49,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:01:50] 2025-11-28 03:01:49,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:01:50] 2025-11-28 03:01:49,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:01:50] 2025-11-28 03:01:49,827 | INFO     | [monitor] control thread has ended
[2025-11-27 22:01:50] 2025-11-28 03:01:50,138 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:01:50] 2025-11-28 03:01:50,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:01:50] 2025-11-28 03:01:50,146 [wrapper] pilotpid: 2210121
[2025-11-27 22:01:50] 2025-11-28 03:01:50,150 [wrapper] Pilot exit status: 0
[2025-11-27 22:01:50] 2025-11-28 03:01:50,169 [wrapper] pandaids: 6897998852
[2025-11-27 22:01:50] 2025-11-28 03:01:50,343 [wrapper] cleanup supervisor_pilot 2370461 2210122
[2025-11-27 22:01:50] 2025-11-28 03:01:50,346 [wrapper] Test setup, not cleaning
[2025-11-27 22:01:50] 2025-11-28 03:01:50,386 [wrapper] apfmon messages muted
[2025-11-27 22:01:50] 2025-11-28 03:01:50,389 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:01:50] 2025-11-28 03:01:50,396 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:01:50]  *** Error codes and diagnostics ***
[2025-11-27 22:01:50]     "exeErrorCode": 0,
[2025-11-27 22:01:50]     "exeErrorDiag": "",
[2025-11-27 22:01:50]     "pilotErrorCode": 0,
[2025-11-27 22:01:50]     "pilotErrorDiag": "",
[2025-11-27 22:01:50]  *** Listing of results directory ***
[2025-11-27 22:01:50] total 1313616
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:26 queuedata.json
[2025-11-27 22:01:50] -rwx------. 1 boincer umatlas     36292 Nov 25 21:29 runpilot2-wrapper.sh
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:01:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:47 run_atlas
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:47 job.xml
[2025-11-27 22:01:50] -rw-r--r--. 2 boincer umatlas 411531782 Nov 27 08:47 EVNT.47483658._002381.pool.root.1
[2025-11-27 22:01:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:47 start_atlas.sh
[2025-11-27 22:01:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:47 shared
[2025-11-27 22:01:50] -rw-r--r--. 2 boincer umatlas    590111 Nov 27 08:47 input.tar.gz
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:47 boinc_lockfile
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 08:47 pandaJob.out
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas        57 Nov 27 08:47 setup.sh.local
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas    991588 Nov 27 08:48 agis_schedconf.cvmfs.json
[2025-11-27 22:01:50] drwx------. 5 boincer umatlas      4096 Nov 27 08:48 pilot3
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:46 boinc_task_state.xml
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas      6945 Nov 27 21:57 init_data.xml
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas 914557458 Nov 27 21:59 HITS.47556161._003636.pool.root.1
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas      1073 Nov 27 22:00 memory_monitor_summary.json
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas   1949896 Nov 27 22:00 log.47556161._003636.job.log.tgz.1
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas      8644 Nov 27 22:01 heartbeat.json
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas       823 Nov 27 22:01 pilotlog.txt
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas        95 Nov 27 22:01 pilot_heartbeat.json
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas   5613077 Nov 27 22:01 log.47556161._003636.job.log.1
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:01 boinc_mmap_file
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:01 wrapper_checkpoint.txt
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas       353 Nov 27 22:01 output.list
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:01 runtime_log
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas   7587840 Nov 27 22:01 result.tar.gz
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas       664 Nov 27 22:01 yXcMDm4SKi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyjMKDm7AmCFm.diag
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 22:01 runtime_log.err
[2025-11-27 22:01:50] -rw-r--r--. 1 boincer umatlas     21809 Nov 27 22:01 stderr.txt
[2025-11-27 22:01:50] HITS file was successfully produced:
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas 914557458 Nov 27 21:59 shared/HITS.pool.root.1
[2025-11-27 22:01:50]  *** Contents of shared directory: ***
[2025-11-27 22:01:50] total 1303028
[2025-11-27 22:01:50] -rw-r--r--. 2 boincer umatlas 411531782 Nov 27 08:47 ATLAS.root_0
[2025-11-27 22:01:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:47 start_atlas.sh
[2025-11-27 22:01:50] -rw-r--r--. 2 boincer umatlas    590111 Nov 27 08:47 input.tar.gz
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas 914557458 Nov 27 21:59 HITS.pool.root.1
[2025-11-27 22:01:50] -rw-------. 1 boincer umatlas   7587840 Nov 27 22:01 result.tar.gz
22:01:52 (2206301): run_atlas exited; CPU time 191345.129490
22:01:52 (2206301): called boinc_finish(0)

</stderr_txt>
]]>

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