Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:50:39 (2443442): wrapper (7.7.26015): starting
18:50:39 (2443442): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 18:50:39] Arguments: --nthreads 8
[2025-11-27 18:50:39] Threads: 8
[2025-11-27 18:50:39] Checking for CVMFS
[2025-11-27 18:50:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 18:50:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 18:50:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 18:50:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 18:50:39] 2.13.3.0 11772 32127 359104 153390 2 588 32477186 32935936 43001 16776704 0 189049122 99.521 240352149 38542 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 18:50:39] CVMFS is ok
[2025-11-27 18:50:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 18:50:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 18:50:39] Further information can be found at the LHC@home message board.
[2025-11-27 18:50:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 18:50:39] Checking for apptainer binary...
[2025-11-27 18:50:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 18:50:39] Running /usr/bin/apptainer --version
[2025-11-27 18:50:39] apptainer version 1.4.4-1.el9
[2025-11-27 18:50:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 18:50:39] c7-3-28.aglt2.org
[2025-11-27 18:50:39] apptainer works
[2025-11-27 18:50:39] Set ATHENA_PROC_NUMBER=8
[2025-11-27 18:50:39] Set ATHENA_CORE_NUMBER=8
[2025-11-27 18:50:40] Starting ATLAS job with PandaID=6898271414
[2025-11-27 18:50:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 08:01:24]  *** The last 200 lines of the pilot log: ***
[2025-11-28 08:01:24] 2025-11-28 13:00:14,097 | INFO     | monitor loop #2963: job 0:6898271414 is in state 'finished'
[2025-11-28 08:01:24] 2025-11-28 13:00:14,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 08:01:24] 2025-11-28 13:00:15,625 | INFO     | time since job start (47359s) is within the limit (172800.0s)
[2025-11-28 08:01:24] 2025-11-28 13:00:15,821 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 08:01:24] 2025-11-28 13:00:15,846 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3170.9472395833327
[2025-11-28 08:01:24] 2025-11-28 13:00:15,893 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898271414/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 08:01:24] 2025-11-28 13:00:15,894 | INFO     | extracted standard info from prmon json
[2025-11-28 08:01:24] 2025-11-28 13:00:15,894 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 08:01:24] 2025-11-28 13:00:15,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 08:01:24] 2025-11-28 13:00:15,907 | INFO     | fitting pss+swap vs Time
[2025-11-28 08:01:24] 2025-11-28 13:00:15,908 | INFO     | sum of square deviations: 144899103220.51572
[2025-11-28 08:01:24] 2025-11-28 13:00:15,921 | INFO     | sum of deviations: 587307686928.4633
[2025-11-28 08:01:24] 2025-11-28 13:00:15,921 | INFO     | mean x: 1764311129.4329896
[2025-11-28 08:01:24] 2025-11-28 13:00:15,922 | INFO     | mean y: 2908055.4896907215
[2025-11-28 08:01:24] 2025-11-28 13:00:15,922 | INFO     | intersect: -7148229980.696049
[2025-11-28 08:01:24] 2025-11-28 13:00:15,923 | INFO     | chi2: 7.325007320808601
[2025-11-28 08:01:24] 2025-11-28 13:00:15,923 | INFO     | sum of square deviations: 142116462556.13522
[2025-11-28 08:01:24] 2025-11-28 13:00:15,937 | INFO     | sum of deviations: 866299842546.1195
[2025-11-28 08:01:24] 2025-11-28 13:00:15,937 | INFO     | mean x: 1764310976.9390402
[2025-11-28 08:01:24] 2025-11-28 13:00:15,937 | INFO     | mean y: 2923346.3216601815
[2025-11-28 08:01:24] 2025-11-28 13:00:15,937 | INFO     | intersect: -10751793553.00281
[2025-11-28 08:01:24] 2025-11-28 13:00:15,938 | INFO     | chi2: 3.7944478629986422
[2025-11-28 08:01:24] 2025-11-28 13:00:15,938 | INFO     | current chi2=3.7944478629986422 (change=48.19871575800997 %)
[2025-11-28 08:01:24] 2025-11-28 13:00:15,939 | INFO     | sum of square deviations: 139369589334.97278
[2025-11-28 08:01:24] 2025-11-28 13:00:15,984 | INFO     | sum of deviations: 1006807926109.5027
[2025-11-28 08:01:24] 2025-11-28 13:00:15,984 | INFO     | mean x: 1764310824.4425588
[2025-11-28 08:01:24] 2025-11-28 13:00:15,984 | INFO     | mean y: 2931118.8864229764
[2025-11-28 08:01:24] 2025-11-28 13:00:15,984 | INFO     | intersect: -12742475756.785679
[2025-11-28 08:01:24] 2025-11-28 13:00:15,985 | INFO     | chi2: 1.9792079206962332
[2025-11-28 08:01:24] 2025-11-28 13:00:15,985 | INFO     | current chi2=1.9792079206962332 (change=47.83936972763878 %)
[2025-11-28 08:01:24] 2025-11-28 13:00:15,986 | INFO     | sum of square deviations: 136658204147.45587
[2025-11-28 08:01:24] 2025-11-28 13:00:15,997 | INFO     | sum of deviations: 994688421577.0427
[2025-11-28 08:01:24] 2025-11-28 13:00:15,997 | INFO     | mean x: 1764310671.9421813
[2025-11-28 08:01:24] 2025-11-28 13:00:15,997 | INFO     | mean y: 2930437.250985545
[2025-11-28 08:01:24] 2025-11-28 13:00:15,997 | INFO     | intersect: -12838884720.455162
[2025-11-28 08:01:24] 2025-11-28 13:00:15,998 | INFO     | chi2: 1.9777382026382528
[2025-11-28 08:01:24] 2025-11-28 13:00:15,998 | INFO     | current chi2=1.9777382026382528 (change=0.07425789087704052 %)
[2025-11-28 08:01:24] 2025-11-28 13:00:15,998 | INFO     | right removable region: 760
[2025-11-28 08:01:24] 2025-11-28 13:00:15,999 | INFO     | sum of square deviations: 142116068131.01224
[2025-11-28 08:01:24] 2025-11-28 13:00:16,012 | INFO     | sum of deviations: 406848259295.0419
[2025-11-28 08:01:24] 2025-11-28 13:00:16,016 | INFO     | mean x: 1764311281.9377432
[2025-11-28 08:01:24] 2025-11-28 13:00:16,016 | INFO     | mean y: 2917922.438391699
[2025-11-28 08:01:24] 2025-11-28 13:00:16,016 | INFO     | intersect: -5047932297.040319
[2025-11-28 08:01:24] 2025-11-28 13:00:16,017 | INFO     | chi2: 5.506917813012908
[2025-11-28 08:01:24] 2025-11-28 13:00:16,017 | INFO     | current chi2=5.506917813012908 (change=24.82030977130813 %)
[2025-11-28 08:01:24] 2025-11-28 13:00:16,018 | INFO     | left removable region: 10
[2025-11-28 08:01:24] 2025-11-28 13:00:16,018 | INFO     | sum of square deviations: 130817243845.47235
[2025-11-28 08:01:24] 2025-11-28 13:00:16,041 | INFO     | sum of deviations: 775364154611.8883
[2025-11-28 08:01:24] 2025-11-28 13:00:16,041 | INFO     | mean x: 1764310946.448
[2025-11-28 08:01:24] 2025-11-28 13:00:16,041 | INFO     | mean y: 2942682.958666667
[2025-11-28 08:01:24] 2025-11-28 13:00:16,042 | INFO     | intersect: -10454267889.992117
[2025-11-28 08:01:24] 2025-11-28 13:00:16,042 | INFO     | chi2: 0.09632929717287793
[2025-11-28 08:01:24] 2025-11-28 13:00:16,042 | INFO     | current memory leak: 5.93 B/s (using 750 data points, chi2=0.10)
[2025-11-28 08:01:24] 2025-11-28 13:00:16,044 | INFO     | could have reported an average CPU frequency of 3147 MHz (30 samples)
[2025-11-28 08:01:24] 2025-11-28 13:00:16,044 | INFO     | ..............................
[2025-11-28 08:01:24] 2025-11-28 13:00:16,044 | INFO     | . Timing measurements:
[2025-11-28 08:01:24] 2025-11-28 13:00:16,044 | INFO     | . get job = 0 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,045 | INFO     | . initial setup = 2 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,045 | INFO     | . payload setup = 9 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,045 | INFO     | . stage-in = 0 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,045 | INFO     | . payload execution = 47303 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,045 | INFO     | . stage-out = 8 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,045 | INFO     | . log creation = 3 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,045 | INFO     | ..............................
[2025-11-28 08:01:24] 2025-11-28 13:00:16,127 | INFO     | 
[2025-11-28 08:01:24] 2025-11-28 13:00:16,127 | INFO     | job summary report
[2025-11-28 08:01:24] 2025-11-28 13:00:16,127 | INFO     | --------------------------------------------------
[2025-11-28 08:01:24] 2025-11-28 13:00:16,127 | INFO     | PanDA job id: 6898271414
[2025-11-28 08:01:24] 2025-11-28 13:00:16,127 | INFO     | task id: 47556161
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | errors: (none)
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | pilot state: finished 
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | transexitcode: 0
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | exeerrorcode: 0
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | exeerrordiag: 
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | exitcode: 0
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | exitmsg: OK
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | cpuconsumptiontime: 193289 s
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | nevents: 1000
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | neventsw: 0
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | pid: 2472157
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | pgrp: 2472157
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | corecount: 8
[2025-11-28 08:01:24] 2025-11-28 13:00:16,128 | INFO     | event service: False
[2025-11-28 08:01:24] 2025-11-28 13:00:16,129 | INFO     | sizes: {0: 2284315, 1: 2284343, 8: 2284605, 11: 2284633, 47314: 2332377, 47315: 2332376, 47324: 2341610, 47342: 2341800}
[2025-11-28 08:01:24] 2025-11-28 13:00:16,129 | INFO     | --------------------------------------------------
[2025-11-28 08:01:24] 2025-11-28 13:00:16,129 | INFO     | 
[2025-11-28 08:01:24] 2025-11-28 13:00:16,129 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-28 08:01:24] 2025-11-28 13:00:16,175 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | job 6898271414 has completed (purged errors)
[2025-11-28 08:01:24] 2025-11-28 13:00:16,177 | INFO     | overall cleanup function is called
[2025-11-28 08:01:24] 2025-11-28 13:00:17,196 | INFO     | --- collectZombieJob: --- 10, [2472157]
[2025-11-28 08:01:24] 2025-11-28 13:00:17,196 | INFO     | zombie collector waiting for pid 2472157
[2025-11-28 08:01:24] 2025-11-28 13:00:17,197 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 08:01:24] 2025-11-28 13:00:17,197 | INFO     | collected zombie processes
[2025-11-28 08:01:24] 2025-11-28 13:00:17,197 | INFO     | will attempt to kill all subprocesses of pid=2472157
[2025-11-28 08:01:24] 2025-11-28 13:00:18,506 | INFO     | process IDs to be killed: [2472157] (in reverse order)
[2025-11-28 08:01:24] 2025-11-28 13:00:18,853 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 08:01:24] 2025-11-28 13:00:18,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 08:01:24] 2025-11-28 13:00:18,955 | INFO     | did not find any defunct processes belonging to 2472157
[2025-11-28 08:01:24] 2025-11-28 13:00:18,985 | INFO     | did not find any defunct processes belonging to 2472157
[2025-11-28 08:01:24] 2025-11-28 13:00:19,007 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 08:01:24] 2025-11-28 13:00:19,007 | INFO     | ready for new job
[2025-11-28 08:01:24] 2025-11-28 13:00:19,007 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 08:01:24] 2025-11-28 13:00:19,011 | INFO     | ***************************************
[2025-11-28 08:01:24] 2025-11-28 13:00:19,011 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 08:01:24] 2025-11-28 13:00:19,011 | INFO     | ***************************************
[2025-11-28 08:01:24] 2025-11-28 13:00:19,011 | INFO     | 
[2025-11-28 08:01:24] 2025-11-28 13:00:19,033 | INFO     | architecture information:
[2025-11-28 08:01:24] 2025-11-28 13:00:19,057 | INFO     | executing command: cat /etc/os-release
[2025-11-28 08:01:24] 2025-11-28 13:00:19,144 | INFO     | cat /etc/os-release:
[2025-11-28 08:01:24] NAME="CentOS Linux"
[2025-11-28 08:01:24] VERSION="7 (Core)"
[2025-11-28 08:01:24] ID="centos"
[2025-11-28 08:01:24] ID_LIKE="rhel fedora"
[2025-11-28 08:01:24] VERSION_ID="7"
[2025-11-28 08:01:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 08:01:24] ANSI_COLOR="0;31"
[2025-11-28 08:01:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 08:01:24] HOME_URL="https://www.centos.org/"
[2025-11-28 08:01:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 08:01:24] 
[2025-11-28 08:01:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 08:01:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 08:01:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 08:01:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 08:01:24] 
[2025-11-28 08:01:24] 2025-11-28 13:00:19,144 | INFO     | ***************************************
[2025-11-28 08:01:24] 2025-11-28 13:00:19,652 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-28 08:01:24] 2025-11-28 13:00:19,702 | INFO     | sufficient remaining disk space (68203577344 B)
[2025-11-28 08:01:24] 2025-11-28 13:00:19,702 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 08:01:24] 2025-11-28 13:00:19,703 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 08:01:24] 2025-11-28 13:00:19,703 | INFO     | update_server=False
[2025-11-28 08:01:24] 2025-11-28 13:00:19,703 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 08:01:24] 2025-11-28 13:00:19,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 08:01:24] 2025-11-28 13:00:19,933 | INFO     | all payload control threads have been joined
[2025-11-28 08:01:24] 2025-11-28 13:00:19,967 | INFO     | all job control threads have been joined
[2025-11-28 08:01:24] 2025-11-28 13:00:19,991 | INFO     | all data control threads have been joined
[2025-11-28 08:01:24] 2025-11-28 13:00:20,130 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:01:24] 2025-11-28 13:00:20,130 | INFO     | aborting loop
[2025-11-28 08:01:24] 2025-11-28 13:00:20,709 | INFO     | [job] retrieve thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:20,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:20,940 | INFO     | [payload] control thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:20,973 | INFO     | [job] control thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:20,999 | INFO     | [data] control thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:21,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 08:01:24] 2025-11-28 13:00:21,150 | INFO     | [job] job monitor thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:21,329 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:21,403 | INFO     | [data] copytool_in thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:21,523 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:21,716 | INFO     | [data] copytool_out thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:21,753 | INFO     | [payload] validate_post thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:21,778 | INFO     | [payload] failed_post thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:22,114 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:22,153 | INFO     | [job] queue monitor thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:22,207 | INFO     | [job] validate thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:22,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 08:01:24] 2025-11-28 13:00:26,711 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 08:01:24] 2025-11-28 13:00:50,115 | INFO     | PID=2451703 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 08:01:24] 2025-11-28 13:00:50,115 | INFO     | .. there are 72 such processes running
[2025-11-28 08:01:24] 2025-11-28 13:00:50,116 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 08:01:24] 2025-11-28 13:00:50,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 08:01:24] 2025-11-28 13:00:50,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 08:01:24] 2025-11-28 13:01:17,991 | INFO     | [monitor] cgroup control has ended
[2025-11-28 08:01:24] 2025-11-28 13:01:19,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632155375424)>', '<ExcThread(monitor, started 140631481493248)>']
[2025-11-28 08:01:24] 2025-11-28 13:01:19,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 08:01:24] 2025-11-28 13:01:19,328 | INFO     | [monitor] control thread has ended
[2025-11-28 08:01:24] 2025-11-28 13:01:24,048 | INFO     | all workflow threads have been joined
[2025-11-28 08:01:24] 2025-11-28 13:01:24,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 08:01:24] 2025-11-28 13:01:24,048 | INFO     | traces error code: 0
[2025-11-28 08:01:24] 2025-11-28 13:01:24,049 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 08:01:24] 2025-11-28 13:01:24,370 [wrapper] ==== pilot stdout END ====
[2025-11-28 08:01:24] 2025-11-28 13:01:24,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 08:01:24] 2025-11-28 13:01:24,375 [wrapper] pilotpid: 2451703
[2025-11-28 08:01:24] 2025-11-28 13:01:24,377 [wrapper] Pilot exit status: 0
[2025-11-28 08:01:24] 2025-11-28 13:01:24,393 [wrapper] pandaids: 6898271414
[2025-11-28 08:01:24] 2025-11-28 13:01:24,530 [wrapper] cleanup supervisor_pilot 2391073 2451704
[2025-11-28 08:01:24] 2025-11-28 13:01:24,533 [wrapper] Test setup, not cleaning
[2025-11-28 08:01:24] 2025-11-28 13:01:24,538 [wrapper] apfmon messages muted
[2025-11-28 08:01:24] 2025-11-28 13:01:24,540 [wrapper] ==== wrapper stdout END ====
[2025-11-28 08:01:24] 2025-11-28 13:01:24,548 [wrapper] ==== wrapper stderr END ====
[2025-11-28 08:01:24]  *** Error codes and diagnostics ***
[2025-11-28 08:01:24]     "exeErrorCode": 0,
[2025-11-28 08:01:24]     "exeErrorDiag": "",
[2025-11-28 08:01:24]     "pilotErrorCode": 0,
[2025-11-28 08:01:24]     "pilotErrorDiag": "",
[2025-11-28 08:01:24]  *** Listing of results directory ***
[2025-11-28 08:01:24] total 1313556
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:08 queuedata.json
[2025-11-28 08:01:24] -rwx------. 1 boincer umatlas     36292 Nov 26 10:08 runpilot2-wrapper.sh
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas       100 Nov 27 18:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 08:01:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 18:50 run_atlas
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas       105 Nov 27 18:50 job.xml
[2025-11-28 08:01:24] -rw-r--r--. 2 boincer umatlas 412267112 Nov 27 18:50 EVNT.47483658._002535.pool.root.1
[2025-11-28 08:01:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 18:50 start_atlas.sh
[2025-11-28 08:01:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 18:50 shared
[2025-11-28 08:01:24] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 18:50 input.tar.gz
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas         0 Nov 27 18:50 boinc_lockfile
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 18:50 pandaJob.out
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas        57 Nov 27 18:50 setup.sh.local
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas    991532 Nov 27 18:50 agis_schedconf.cvmfs.json
[2025-11-28 08:01:24] drwx------. 5 boincer umatlas      4096 Nov 27 18:50 pilot3
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas       533 Nov 28 07:51 boinc_task_state.xml
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas      6947 Nov 28 07:54 init_data.xml
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas 912636261 Nov 28 07:59 HITS.47556161._005175.pool.root.1
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas      1062 Nov 28 07:59 memory_monitor_summary.json
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas   1516240 Nov 28 07:59 agis_ddmendpoints.agis.ALL.json
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas   1985051 Nov 28 07:59 log.47556161._005175.job.log.tgz.1
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas      8600 Nov 28 08:00 heartbeat.json
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas        95 Nov 28 08:00 pilot_heartbeat.json
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 08:01 boinc_mmap_file
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas        29 Nov 28 08:01 wrapper_checkpoint.txt
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas      4824 Nov 28 08:01 pilotlog.txt
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas   6144189 Nov 28 08:01 log.47556161._005175.job.log.1
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas       353 Nov 28 08:01 output.list
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas       620 Nov 28 08:01 runtime_log
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas   8151040 Nov 28 08:01 result.tar.gz
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas       663 Nov 28 08:01 tjZMDmAJWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmN3MKDm2XSRYo.diag
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas      9338 Nov 28 08:01 runtime_log.err
[2025-11-28 08:01:24] -rw-r--r--. 1 boincer umatlas     12327 Nov 28 08:01 stderr.txt
[2025-11-28 08:01:24] HITS file was successfully produced:
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas 912636261 Nov 28 07:59 shared/HITS.pool.root.1
[2025-11-28 08:01:24]  *** Contents of shared directory: ***
[2025-11-28 08:01:24] total 1302420
[2025-11-28 08:01:24] -rw-r--r--. 2 boincer umatlas 412267112 Nov 27 18:50 ATLAS.root_0
[2025-11-28 08:01:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 18:50 start_atlas.sh
[2025-11-28 08:01:24] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 18:50 input.tar.gz
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas 912636261 Nov 28 07:59 HITS.pool.root.1
[2025-11-28 08:01:24] -rw-------. 1 boincer umatlas   8151040 Nov 28 08:01 result.tar.gz
08:01:26 (2443442): run_atlas exited; CPU time 194790.069781
08:01:26 (2443442): called boinc_finish(0)

</stderr_txt>
]]>

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