Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:55:25 (1324): wrapper (7.7.26015): starting
08:55:25 (1324): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:55:25] Arguments: --nthreads 8
[2025-11-27 08:55:25] Threads: 8
[2025-11-27 08:55:25] Checking for CVMFS
[2025-11-27 08:55:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:55:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:55:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:55:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:55:26] 2.11.2.0 3838 143992 135776 153366 2 81 13581577 18432000 1717 130560 0 118790767 99.988 5123949 27242 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 08:55:26] CVMFS is ok
[2025-11-27 08:55:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:55:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:55:26] Further information can be found at the LHC@home message board.
[2025-11-27 08:55:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:55:26] Checking for apptainer binary...
[2025-11-27 08:55:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:55:26] Running /usr/bin/apptainer --version
[2025-11-27 08:55:26] apptainer version 1.3.2-1.el7
[2025-11-27 08:55:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:55:27] c-206-4.aglt2.org
[2025-11-27 08:55:27] apptainer works
[2025-11-27 08:55:27] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:55:27] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:55:27] Starting ATLAS job with PandaID=6898271461
[2025-11-27 08:55:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 03:33:44]  *** The last 200 lines of the pilot log: ***
[2025-11-28 03:33:44] 2025-11-28 08:33:11,403 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 03:33:44] 2025-11-28 08:33:11,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 03:33:44] 2025-11-28 08:33:11,418 | INFO     | fitting pss+swap vs Time
[2025-11-28 03:33:44] 2025-11-28 08:33:11,419 | INFO     | sum of square deviations: 411596063238.55853
[2025-11-28 03:33:44] 2025-11-28 08:33:11,440 | INFO     | sum of deviations: 1939813829105.0112
[2025-11-28 03:33:44] 2025-11-28 08:33:11,441 | INFO     | mean x: 1764285249.5131938
[2025-11-28 03:33:44] 2025-11-28 08:33:11,441 | INFO     | mean y: 2867025.102820746
[2025-11-28 03:33:44] 2025-11-28 08:33:11,441 | INFO     | intersect: -8312044683.632561
[2025-11-28 03:33:44] 2025-11-28 08:33:11,442 | INFO     | chi2: 5.242806472794353
[2025-11-28 03:33:44] 2025-11-28 08:33:11,443 | INFO     | sum of square deviations: 406003972264.73596
[2025-11-28 03:33:44] 2025-11-28 08:33:11,469 | INFO     | sum of deviations: 2256412263831.9014
[2025-11-28 03:33:44] 2025-11-28 08:33:11,470 | INFO     | mean x: 1764285097.0155394
[2025-11-28 03:33:44] 2025-11-28 08:33:11,470 | INFO     | mean y: 2875656.4177330895
[2025-11-28 03:33:44] 2025-11-28 08:33:11,470 | INFO     | intersect: -9802335133.997705
[2025-11-28 03:33:44] 2025-11-28 08:33:11,472 | INFO     | chi2: 2.8131135064345054
[2025-11-28 03:33:44] 2025-11-28 08:33:11,472 | INFO     | current chi2=2.8131135064345054 (change=46.34336550410281 %)
[2025-11-28 03:33:44] 2025-11-28 08:33:11,474 | INFO     | sum of square deviations: 400462765965.90045
[2025-11-28 03:33:44] 2025-11-28 08:33:11,500 | INFO     | sum of deviations: 2414677728997.724
[2025-11-28 03:33:44] 2025-11-28 08:33:11,500 | INFO     | mean x: 1764284944.5179064
[2025-11-28 03:33:44] 2025-11-28 08:33:11,500 | INFO     | mean y: 2880010.142332415
[2025-11-28 03:33:44] 2025-11-28 08:33:11,500 | INFO     | intersect: -10635261473.143856
[2025-11-28 03:33:44] 2025-11-28 08:33:11,501 | INFO     | chi2: 2.102979342749201
[2025-11-28 03:33:44] 2025-11-28 08:33:11,502 | INFO     | current chi2=2.102979342749201 (change=25.243708156851714 %)
[2025-11-28 03:33:44] 2025-11-28 08:33:11,503 | INFO     | sum of square deviations: 394972211779.5525
[2025-11-28 03:33:44] 2025-11-28 08:33:11,523 | INFO     | sum of deviations: 2445507605391.58
[2025-11-28 03:33:44] 2025-11-28 08:33:11,524 | INFO     | mean x: 1764284792.0202951
[2025-11-28 03:33:44] 2025-11-28 08:33:11,524 | INFO     | mean y: 2880864.9280442805
[2025-11-28 03:33:44] 2025-11-28 08:33:11,524 | INFO     | intersect: -10920854396.150131
[2025-11-28 03:33:44] 2025-11-28 08:33:11,525 | INFO     | chi2: 2.0154320229579548
[2025-11-28 03:33:44] 2025-11-28 08:33:11,525 | INFO     | current chi2=2.0154320229579548 (change=4.1630137781951095 %)
[2025-11-28 03:33:44] 2025-11-28 08:33:11,525 | INFO     | right removable region: 1083
[2025-11-28 03:33:44] 2025-11-28 08:33:11,526 | INFO     | sum of square deviations: 406003628224.73566
[2025-11-28 03:33:44] 2025-11-28 08:33:11,547 | INFO     | sum of deviations: 1691865155430.1257
[2025-11-28 03:33:44] 2025-11-28 08:33:11,547 | INFO     | mean x: 1764285402.0155394
[2025-11-28 03:33:44] 2025-11-28 08:33:11,547 | INFO     | mean y: 2873776.345521024
[2025-11-28 03:33:44] 2025-11-28 08:33:11,547 | INFO     | intersect: -7349112236.577174
[2025-11-28 03:33:44] 2025-11-28 08:33:11,548 | INFO     | chi2: 3.5251754659177594
[2025-11-28 03:33:44] 2025-11-28 08:33:11,548 | INFO     | current chi2=3.5251754659177594 (change=32.76167098270017 %)
[2025-11-28 03:33:44] 2025-11-28 08:33:11,549 | INFO     | sum of square deviations: 400462077885.90076
[2025-11-28 03:33:44] 2025-11-28 08:33:11,575 | INFO     | sum of deviations: 1629992017907.5176
[2025-11-28 03:33:44] 2025-11-28 08:33:11,576 | INFO     | mean x: 1764285554.5179064
[2025-11-28 03:33:44] 2025-11-28 08:33:11,576 | INFO     | mean y: 2875478.383838384
[2025-11-28 03:33:44] 2025-11-28 08:33:11,576 | INFO     | intersect: -7178257342.869432
[2025-11-28 03:33:44] 2025-11-28 08:33:11,578 | INFO     | chi2: 3.491292890068103
[2025-11-28 03:33:44] 2025-11-28 08:33:11,578 | INFO     | current chi2=3.491292890068103 (change=0.961159981318418 %)
[2025-11-28 03:33:44] 2025-11-28 08:33:11,578 | INFO     | left removable region: 20
[2025-11-28 03:33:44] 2025-11-28 08:33:11,580 | INFO     | sum of square deviations: 372458511174.98566
[2025-11-28 03:33:44] 2025-11-28 08:33:11,620 | INFO     | sum of deviations: 2024815046135.496
[2025-11-28 03:33:44] 2025-11-28 08:33:11,620 | INFO     | mean x: 1764285371.526811
[2025-11-28 03:33:44] 2025-11-28 08:33:11,620 | INFO     | mean y: 2892512.1580432737
[2025-11-28 03:33:44] 2025-11-28 08:33:11,620 | INFO     | intersect: -9588381304.28565
[2025-11-28 03:33:44] 2025-11-28 08:33:11,622 | INFO     | chi2: 0.2287309674405389
[2025-11-28 03:33:44] 2025-11-28 08:33:11,622 | INFO     | current memory leak: 5.44 B/s (using 1063 data points, chi2=0.23)
[2025-11-28 03:33:44] 2025-11-28 08:33:11,623 | INFO     | could have reported an average CPU frequency of 2613 MHz (40 samples)
[2025-11-28 03:33:44] 2025-11-28 08:33:11,624 | INFO     | ..............................
[2025-11-28 03:33:44] 2025-11-28 08:33:11,624 | INFO     | . Timing measurements:
[2025-11-28 03:33:44] 2025-11-28 08:33:11,624 | INFO     | . get job = 0 s
[2025-11-28 03:33:44] 2025-11-28 08:33:11,624 | INFO     | . initial setup = 2 s
[2025-11-28 03:33:44] 2025-11-28 08:33:11,624 | INFO     | . payload setup = 4 s
[2025-11-28 03:33:44] 2025-11-28 08:33:11,625 | INFO     | . stage-in = 0 s
[2025-11-28 03:33:44] 2025-11-28 08:33:11,625 | INFO     | . payload execution = 67019 s
[2025-11-28 03:33:44] 2025-11-28 08:33:11,625 | INFO     | . stage-out = 4 s
[2025-11-28 03:33:44] 2025-11-28 08:33:11,625 | INFO     | . log creation = 0 s
[2025-11-28 03:33:44] 2025-11-28 08:33:11,625 | INFO     | ..............................
[2025-11-28 03:33:44] 2025-11-28 08:33:12,186 | INFO     | 
[2025-11-28 03:33:44] 2025-11-28 08:33:12,187 | INFO     | job summary report
[2025-11-28 03:33:44] 2025-11-28 08:33:12,187 | INFO     | --------------------------------------------------
[2025-11-28 03:33:44] 2025-11-28 08:33:12,187 | INFO     | PanDA job id: 6898271461
[2025-11-28 03:33:44] 2025-11-28 08:33:12,187 | INFO     | task id: 47556161
[2025-11-28 03:33:44] 2025-11-28 08:33:12,187 | INFO     | errors: (none)
[2025-11-28 03:33:44] 2025-11-28 08:33:12,188 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 03:33:44] 2025-11-28 08:33:12,188 | INFO     | pilot state: finished 
[2025-11-28 03:33:44] 2025-11-28 08:33:12,188 | INFO     | transexitcode: 0
[2025-11-28 03:33:44] 2025-11-28 08:33:12,188 | INFO     | exeerrorcode: 0
[2025-11-28 03:33:44] 2025-11-28 08:33:12,188 | INFO     | exeerrordiag: 
[2025-11-28 03:33:44] 2025-11-28 08:33:12,188 | INFO     | exitcode: 0
[2025-11-28 03:33:44] 2025-11-28 08:33:12,189 | INFO     | exitmsg: OK
[2025-11-28 03:33:44] 2025-11-28 08:33:12,189 | INFO     | cpuconsumptiontime: 523386 s
[2025-11-28 03:33:44] 2025-11-28 08:33:12,189 | INFO     | nevents: 1000
[2025-11-28 03:33:44] 2025-11-28 08:33:12,189 | INFO     | neventsw: 0
[2025-11-28 03:33:44] 2025-11-28 08:33:12,189 | INFO     | pid: 11993
[2025-11-28 03:33:44] 2025-11-28 08:33:12,189 | INFO     | pgrp: 11993
[2025-11-28 03:33:44] 2025-11-28 08:33:12,189 | INFO     | corecount: 8
[2025-11-28 03:33:44] 2025-11-28 08:33:12,190 | INFO     | event service: False
[2025-11-28 03:33:44] 2025-11-28 08:33:12,190 | INFO     | sizes: {0: 2284144, 1: 2284343, 4: 2284605, 11: 2284633, 67028: 2340083, 67029: 2340082, 67033: 2349260, 67035: 2349316, 67041: 2349562}
[2025-11-28 03:33:44] 2025-11-28 08:33:12,190 | INFO     | --------------------------------------------------
[2025-11-28 03:33:44] 2025-11-28 08:33:12,190 | INFO     | 
[2025-11-28 03:33:44] 2025-11-28 08:33:12,190 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 03:33:44] 2025-11-28 08:33:12,209 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,210 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,210 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,211 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,211 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,211 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,211 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,211 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,211 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,212 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,212 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,212 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,212 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,212 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,212 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 03:33:44] 2025-11-28 08:33:12,213 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,213 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 03:33:44] 2025-11-28 08:33:12,213 | INFO     | job 6898271461 has completed (purged errors)
[2025-11-28 03:33:44] 2025-11-28 08:33:12,213 | INFO     | overall cleanup function is called
[2025-11-28 03:33:44] 2025-11-28 08:33:13,230 | INFO     | --- collectZombieJob: --- 10, [11993]
[2025-11-28 03:33:44] 2025-11-28 08:33:13,230 | INFO     | zombie collector waiting for pid 11993
[2025-11-28 03:33:44] 2025-11-28 08:33:13,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 03:33:44] 2025-11-28 08:33:13,231 | INFO     | collected zombie processes
[2025-11-28 03:33:44] 2025-11-28 08:33:13,231 | INFO     | will attempt to kill all subprocesses of pid=11993
[2025-11-28 03:33:44] 2025-11-28 08:33:13,403 | INFO     | process IDs to be killed: [11993] (in reverse order)
[2025-11-28 03:33:44] 2025-11-28 08:33:13,464 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 03:33:44] 2025-11-28 08:33:13,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 03:33:44] 2025-11-28 08:33:13,470 | INFO     | did not find any defunct processes belonging to 11993
[2025-11-28 03:33:44] 2025-11-28 08:33:13,475 | INFO     | did not find any defunct processes belonging to 11993
[2025-11-28 03:33:44] 2025-11-28 08:33:13,477 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 03:33:44] 2025-11-28 08:33:13,477 | INFO     | ready for new job
[2025-11-28 03:33:44] 2025-11-28 08:33:13,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 03:33:44] 2025-11-28 08:33:13,482 | INFO     | ***************************************
[2025-11-28 03:33:44] 2025-11-28 08:33:13,483 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 03:33:44] 2025-11-28 08:33:13,483 | INFO     | ***************************************
[2025-11-28 03:33:44] 2025-11-28 08:33:13,483 | INFO     | 
[2025-11-28 03:33:44] 2025-11-28 08:33:13,484 | INFO     | architecture information:
[2025-11-28 03:33:44] 2025-11-28 08:33:13,485 | INFO     | executing command: cat /etc/os-release
[2025-11-28 03:33:44] 2025-11-28 08:33:13,499 | INFO     | cat /etc/os-release:
[2025-11-28 03:33:44] NAME="CentOS Linux"
[2025-11-28 03:33:44] VERSION="7 (Core)"
[2025-11-28 03:33:44] ID="centos"
[2025-11-28 03:33:44] ID_LIKE="rhel fedora"
[2025-11-28 03:33:44] VERSION_ID="7"
[2025-11-28 03:33:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 03:33:44] ANSI_COLOR="0;31"
[2025-11-28 03:33:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 03:33:44] HOME_URL="https://www.centos.org/"
[2025-11-28 03:33:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 03:33:44] 
[2025-11-28 03:33:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 03:33:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 03:33:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 03:33:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 03:33:44] 
[2025-11-28 03:33:44] 2025-11-28 08:33:13,500 | INFO     | ***************************************
[2025-11-28 03:33:44] 2025-11-28 08:33:14,003 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 03:33:44] 2025-11-28 08:33:14,019 | INFO     | sufficient remaining disk space (25006440448 B)
[2025-11-28 03:33:44] 2025-11-28 08:33:14,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 03:33:44] 2025-11-28 08:33:14,020 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 03:33:44] 2025-11-28 08:33:14,020 | INFO     | update_server=False
[2025-11-28 03:33:44] 2025-11-28 08:33:14,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 03:33:44] 2025-11-28 08:33:14,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:33:44] 2025-11-28 08:33:14,021 | INFO     | aborting loop
[2025-11-28 03:33:44] 2025-11-28 08:33:14,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 03:33:44] 2025-11-28 08:33:14,315 | INFO     | all job control threads have been joined
[2025-11-28 03:33:44] 2025-11-28 08:33:14,625 | INFO     | all data control threads have been joined
[2025-11-28 03:33:44] 2025-11-28 08:33:14,782 | INFO     | all payload control threads have been joined
[2025-11-28 03:33:44] 2025-11-28 08:33:15,025 | INFO     | [job] retrieve thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:15,026 | INFO     | [job] job monitor thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:15,034 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:15,320 | INFO     | [job] control thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:15,365 | INFO     | [data] copytool_in thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:15,630 | INFO     | [data] control thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:15,788 | INFO     | [payload] control thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:15,887 | INFO     | [job] validate thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:16,054 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:16,192 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:16,200 | INFO     | [data] copytool_out thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:16,440 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:16,507 | INFO     | [payload] failed_post thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:16,514 | INFO     | [payload] validate_post thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:16,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 03:33:44] 2025-11-28 08:33:16,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 03:33:44] 2025-11-28 08:33:17,801 | INFO     | [job] queue monitor thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:20,797 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 03:33:44] 2025-11-28 08:33:27,381 | INFO     | [monitor] cgroup control has ended
[2025-11-28 03:33:44] 2025-11-28 08:33:28,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140615500068672)>', '<ExcThread(monitor, started 140615048214272)>']
[2025-11-28 03:33:44] 2025-11-28 08:33:33,294 | INFO     | all workflow threads have been joined
[2025-11-28 03:33:44] 2025-11-28 08:33:33,294 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 03:33:44] 2025-11-28 08:33:33,294 | INFO     | traces error code: 0
[2025-11-28 03:33:44] 2025-11-28 08:33:33,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 03:33:44] 2025-11-28 08:33:44,143 | INFO     | PID=5619 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-28 03:33:44] 2025-11-28 08:33:44,144 | INFO     | .. there are 3 such processes running
[2025-11-28 03:33:44] 2025-11-28 08:33:44,144 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 03:33:44] 2025-11-28 08:33:44,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 03:33:44] 2025-11-28 08:33:44,144 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 03:33:44] 2025-11-28 08:33:44,145 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 03:33:44] 2025-11-28 08:33:44,145 | INFO     | [monitor] control thread has ended
[2025-11-28 03:33:44] 2025-11-28 08:33:44,233 [wrapper] ==== pilot stdout END ====
[2025-11-28 03:33:44] 2025-11-28 08:33:44,235 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 03:33:44] 2025-11-28 08:33:44,237 [wrapper] pilotpid: 5619
[2025-11-28 03:33:44] 2025-11-28 08:33:44,239 [wrapper] Pilot exit status: 0
[2025-11-28 03:33:44] 2025-11-28 08:33:44,246 [wrapper] pandaids: 6898271461
[2025-11-28 03:33:44] 2025-11-28 08:33:44,285 [wrapper] cleanup supervisor_pilot  1250 5620
[2025-11-28 03:33:44] 2025-11-28 08:33:44,287 [wrapper] Test setup, not cleaning
[2025-11-28 03:33:44] 2025-11-28 08:33:44,290 [wrapper] apfmon messages muted
[2025-11-28 03:33:44] 2025-11-28 08:33:44,292 [wrapper] ==== wrapper stdout END ====
[2025-11-28 03:33:44] 2025-11-28 08:33:44,294 [wrapper] ==== wrapper stderr END ====
[2025-11-28 03:33:44]  *** Error codes and diagnostics ***
[2025-11-28 03:33:44]     "exeErrorCode": 0,
[2025-11-28 03:33:44]     "exeErrorDiag": "",
[2025-11-28 03:33:44]     "pilotErrorCode": 0,
[2025-11-28 03:33:44]     "pilotErrorDiag": "",
[2025-11-28 03:33:44]  *** Listing of results directory ***
[2025-11-28 03:33:44] total 1324644
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 10:08 queuedata.json
[2025-11-28 03:33:44] -rwx------ 1 boincer umatlas     36292 Nov 26 10:08 runpilot2-wrapper.sh
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas       100 Nov 27 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 03:33:44] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 08:55 run_atlas
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas       105 Nov 27 08:55 job.xml
[2025-11-28 03:33:44] -rw-r--r-- 2 boincer umatlas 410424069 Nov 27 08:55 EVNT.47483658._002537.pool.root.1
[2025-11-28 03:33:44] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 08:55 start_atlas.sh
[2025-11-28 03:33:44] drwxrwx--x 2 boincer umatlas      4096 Nov 27 08:55 shared
[2025-11-28 03:33:44] -rw-r--r-- 2 boincer umatlas    590101 Nov 27 08:55 input.tar.gz
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas         0 Nov 27 08:55 boinc_lockfile
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 08:55 pandaJob.out
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas        57 Nov 27 08:55 setup.sh.local
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas    991588 Nov 27 08:55 agis_schedconf.cvmfs.json
[2025-11-28 03:33:44] drwx------ 5 boincer umatlas      4096 Nov 27 08:55 pilot3
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas       533 Nov 28 03:18 boinc_task_state.xml
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 03:27 init_data.xml
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas 919014504 Nov 28 03:32 HITS.47556161._005199.pool.root.1
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas      1068 Nov 28 03:32 memory_monitor_summary.json
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas   1516240 Nov 28 03:33 agis_ddmendpoints.agis.ALL.json
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas   2273132 Nov 28 03:33 log.47556161._005199.job.log.tgz.1
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas      8661 Nov 28 03:33 heartbeat.json
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 03:33 boinc_mmap_file
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas        29 Nov 28 03:33 wrapper_checkpoint.txt
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas        95 Nov 28 03:33 pilot_heartbeat.json
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas       819 Nov 28 03:33 pilotlog.txt
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas   9269164 Nov 28 03:33 log.47556161._005199.job.log.1
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas       353 Nov 28 03:33 output.list
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas       620 Nov 28 03:33 runtime_log
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas  11560960 Nov 28 03:33 result.tar.gz
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas      9338 Nov 28 03:33 runtime_log.err
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas       667 Nov 28 03:33 Mn7MDmAJWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmj3MKDmJRk8Ln.diag
[2025-11-28 03:33:44] -rw-r--r-- 1 boincer umatlas     21115 Nov 28 03:33 stderr.txt
[2025-11-28 03:33:44] HITS file was successfully produced:
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas 919014504 Nov 28 03:32 shared/HITS.pool.root.1
[2025-11-28 03:33:44]  *** Contents of shared directory: ***
[2025-11-28 03:33:44] total 1310176
[2025-11-28 03:33:44] -rw-r--r-- 2 boincer umatlas 410424069 Nov 27 08:55 ATLAS.root_0
[2025-11-28 03:33:44] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 08:55 start_atlas.sh
[2025-11-28 03:33:44] -rw-r--r-- 2 boincer umatlas    590101 Nov 27 08:55 input.tar.gz
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas 919014504 Nov 28 03:32 HITS.pool.root.1
[2025-11-28 03:33:44] -rw------- 1 boincer umatlas  11560960 Nov 28 03:33 result.tar.gz
03:33:45 (1324): run_atlas exited; CPU time 523075.723500
03:33:45 (1324): called boinc_finish(0)

</stderr_txt>
]]>

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