Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:14:34 (23065): wrapper (7.7.26015): starting
08:14:34 (23065): wrapper: running run_atlas (--nthreads 8)
[2025-11-29 08:14:34] Arguments: --nthreads 8
[2025-11-29 08:14:34] Threads: 8
[2025-11-29 08:14:34] Checking for CVMFS
[2025-11-29 08:14:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-29 08:14:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-29 08:14:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-29 08:14:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-29 08:14:37] 2.11.2.0 14339 289396 142820 153434 0 84 19636557 25165824 2554 130560 18 157186661 99.890 82691045 3616 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-29 08:14:37] CVMFS is ok
[2025-11-29 08:14:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-29 08:14:37] Checking for apptainer binary...
[2025-11-29 08:14:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-29 08:14:37] Running /usr/bin/apptainer --version
[2025-11-29 08:14:37] apptainer version 1.3.2-1.el7
[2025-11-29 08:14:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-29 08:14:39] cg-vwn496.simple-grid.lan
[2025-11-29 08:14:39] apptainer works
[2025-11-29 08:14:39] Set ATHENA_PROC_NUMBER=8
[2025-11-29 08:14:39] Set ATHENA_CORE_NUMBER=8
[2025-11-29 08:14:39] Starting ATLAS job with PandaID=6898000233
[2025-11-29 08:14:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-30 05:57:05]  *** The last 200 lines of the pilot log: ***
[2025-11-30 05:57:05] 2025-11-30 04:56:21,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:57:05] 2025-11-30 04:56:22,013 | INFO     | time since job start (77868s) is within the limit (172800.0s)
[2025-11-30 05:57:05] 2025-11-30 04:56:23,983 | INFO     | monitor loop #5275: job 0:6898000233 is in state 'finished'
[2025-11-30 05:57:05] 2025-11-30 04:56:23,983 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:57:05] 2025-11-30 04:56:24,023 | INFO     | time since job start (77870s) is within the limit (172800.0s)
[2025-11-30 05:57:05] 2025-11-30 04:56:26,039 | INFO     | time since job start (77872s) is within the limit (172800.0s)
[2025-11-30 05:57:05] 2025-11-30 04:56:26,498 | INFO     | monitor loop #5276: job 0:6898000233 is in state 'finished'
[2025-11-30 05:57:05] 2025-11-30 04:56:26,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-30 05:57:05] 2025-11-30 04:56:28,045 | INFO     | time since job start (77874s) is within the limit (172800.0s)
[2025-11-30 05:57:05] 2025-11-30 04:56:28,698 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-30 05:57:05] 2025-11-30 04:56:28,699 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-30 05:57:05] 2025-11-30 04:56:28,701 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6898000233/memory_monitor_summary.json (trf name=prmon)
[2025-11-30 05:57:05] 2025-11-30 04:56:28,702 | INFO     | extracted standard info from prmon json
[2025-11-30 05:57:05] 2025-11-30 04:56:28,702 | INFO     | extracted standard memory fields from prmon json
[2025-11-30 05:57:05] 2025-11-30 04:56:28,702 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-30 05:57:05] 2025-11-30 04:56:28,742 | INFO     | fitting pss+swap vs Time
[2025-11-30 05:57:05] 2025-11-30 04:56:28,747 | INFO     | sum of square deviations: 630678559525.105
[2025-11-30 05:57:05] 2025-11-30 04:56:28,801 | INFO     | sum of deviations: 2933681035726.882
[2025-11-30 05:57:05] 2025-11-30 04:56:28,801 | INFO     | mean x: 1764439856.038674
[2025-11-30 05:57:05] 2025-11-30 04:56:28,801 | INFO     | mean y: 2848365.0228887135
[2025-11-30 05:57:05] 2025-11-30 04:56:28,801 | INFO     | intersect: -8204666645.855292
[2025-11-30 05:57:05] 2025-11-30 04:56:28,803 | INFO     | chi2: 18.625280577244755
[2025-11-30 05:57:05] 2025-11-30 04:56:28,804 | INFO     | sum of square deviations: 623241788897.1897
[2025-11-30 05:57:05] 2025-11-30 04:56:28,848 | INFO     | sum of deviations: 3356752998596.913
[2025-11-30 05:57:05] 2025-11-30 04:56:28,848 | INFO     | mean x: 1764439703.5427892
[2025-11-30 05:57:05] 2025-11-30 04:56:28,848 | INFO     | mean y: 2857039.622028526
[2025-11-30 05:57:05] 2025-11-30 04:56:28,849 | INFO     | intersect: -9500337982.314688
[2025-11-30 05:57:05] 2025-11-30 04:56:28,850 | INFO     | chi2: 15.43726613760222
[2025-11-30 05:57:05] 2025-11-30 04:56:28,850 | INFO     | current chi2=15.43726613760222 (change=17.116598197921693 %)
[2025-11-30 05:57:05] 2025-11-30 04:56:28,850 | INFO     | right removable region: 1261
[2025-11-30 05:57:05] 2025-11-30 04:56:28,852 | INFO     | sum of square deviations: 623240986137.1891
[2025-11-30 05:57:05] 2025-11-30 04:56:28,913 | INFO     | sum of deviations: 2403662321847.763
[2025-11-30 05:57:05] 2025-11-30 04:56:28,913 | INFO     | mean x: 1764440008.5427892
[2025-11-30 05:57:05] 2025-11-30 04:56:28,913 | INFO     | mean y: 2859231.902535658
[2025-11-30 05:57:05] 2025-11-30 04:56:28,914 | INFO     | intersect: -6802081492.52133
[2025-11-30 05:57:05] 2025-11-30 04:56:28,915 | INFO     | chi2: 13.923621533851508
[2025-11-30 05:57:05] 2025-11-30 04:56:28,915 | INFO     | current chi2=13.923621533851508 (change=25.243426663528766 %)
[2025-11-30 05:57:05] 2025-11-30 04:56:28,917 | INFO     | sum of square deviations: 615862111524.2303
[2025-11-30 05:57:05] 2025-11-30 04:56:28,960 | INFO     | sum of deviations: 1949946704928.2344
[2025-11-30 05:57:05] 2025-11-30 04:56:28,960 | INFO     | mean x: 1764440161.0469372
[2025-11-30 05:57:05] 2025-11-30 04:56:28,960 | INFO     | mean y: 2868608.8265712014
[2025-11-30 05:57:05] 2025-11-30 04:56:28,960 | INFO     | intersect: -5583713539.50738
[2025-11-30 05:57:05] 2025-11-30 04:56:28,962 | INFO     | chi2: 10.598092087551187
[2025-11-30 05:57:05] 2025-11-30 04:56:28,962 | INFO     | current chi2=10.598092087551187 (change=23.8840838801543 %)
[2025-11-30 05:57:05] 2025-11-30 04:56:28,962 | INFO     | left removable region: 20
[2025-11-30 05:57:05] 2025-11-30 04:56:28,964 | INFO     | sum of square deviations: 592642879363.1637
[2025-11-30 05:57:05] 2025-11-30 04:56:29,005 | INFO     | sum of deviations: 2068446147728.1917
[2025-11-30 05:57:05] 2025-11-30 04:56:29,005 | INFO     | mean x: 1764440283.0556004
[2025-11-30 05:57:05] 2025-11-30 04:56:29,005 | INFO     | mean y: 2887982.5479452056
[2025-11-30 05:57:05] 2025-11-30 04:56:29,005 | INFO     | intersect: -6155373313.537483
[2025-11-30 05:57:05] 2025-11-30 04:56:29,007 | INFO     | chi2: 4.665802122067188
[2025-11-30 05:57:05] 2025-11-30 04:56:29,007 | INFO     | current memory leak: 3.49 B/s (using 1241 data points, chi2=4.67)
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | ..............................
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . Timing measurements:
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . get job = 0 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . initial setup = 4 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . payload setup = 156 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . stage-in = 0 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . payload execution = 77398 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . stage-out = 4 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,009 | INFO     | . log creation = 1 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,010 | INFO     | ..............................
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | 
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | job summary report
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | --------------------------------------------------
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | PanDA job id: 6898000233
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | task id: 47556173
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | errors: (none)
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-30 05:57:05] 2025-11-30 04:56:29,116 | INFO     | pilot state: finished 
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | transexitcode: 0
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | exeerrorcode: 0
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | exeerrordiag: 
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | exitcode: 0
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | exitmsg: OK
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | cpuconsumptiontime: 291875 s
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | nevents: 1000
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | neventsw: 0
[2025-11-30 05:57:05] 2025-11-30 04:56:29,117 | INFO     | pid: 1106
[2025-11-30 05:57:05] 2025-11-30 04:56:29,118 | INFO     | pgrp: 1106
[2025-11-30 05:57:05] 2025-11-30 04:56:29,118 | INFO     | corecount: 8
[2025-11-30 05:57:05] 2025-11-30 04:56:29,118 | INFO     | event service: False
[2025-11-30 05:57:05] 2025-11-30 04:56:29,118 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 12: 2284321, 23: 2284349, 34: 2284377, 45: 2284533, 55: 2284561, 66: 2284589, 77: 2284617, 88: 2284673, 98: 2284981, 10
[2025-11-30 05:57:05] 2025-11-30 04:56:29,118 | INFO     | --------------------------------------------------
[2025-11-30 05:57:05] 2025-11-30 04:56:29,118 | INFO     | 
[2025-11-30 05:57:05] 2025-11-30 04:56:29,118 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-30 05:57:05] 2025-11-30 04:56:29,579 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,579 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,581 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,581 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,581 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-30 05:57:05] 2025-11-30 04:56:29,581 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,581 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-30 05:57:05] 2025-11-30 04:56:29,581 | INFO     | job 6898000233 has completed (purged errors)
[2025-11-30 05:57:05] 2025-11-30 04:56:29,581 | INFO     | overall cleanup function is called
[2025-11-30 05:57:05] 2025-11-30 04:56:30,599 | INFO     | --- collectZombieJob: --- 10, [1106]
[2025-11-30 05:57:05] 2025-11-30 04:56:30,599 | INFO     | zombie collector waiting for pid 1106
[2025-11-30 05:57:05] 2025-11-30 04:56:30,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-30 05:57:05] 2025-11-30 04:56:30,599 | INFO     | collected zombie processes
[2025-11-30 05:57:05] 2025-11-30 04:56:30,599 | INFO     | will attempt to kill all subprocesses of pid=1106
[2025-11-30 05:57:05] 2025-11-30 04:56:30,706 | INFO     | process IDs to be killed: [1106] (in reverse order)
[2025-11-30 05:57:05] 2025-11-30 04:56:31,678 | WARNING  | found no corresponding commands to process id(s)
[2025-11-30 05:57:05] 2025-11-30 04:56:31,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-30 05:57:05] 2025-11-30 04:56:31,681 | INFO     | did not find any defunct processes belonging to 1106
[2025-11-30 05:57:05] 2025-11-30 04:56:31,684 | INFO     | did not find any defunct processes belonging to 1106
[2025-11-30 05:57:05] 2025-11-30 04:56:31,751 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-30 05:57:05] 2025-11-30 04:56:31,751 | INFO     | ready for new job
[2025-11-30 05:57:05] 2025-11-30 04:56:31,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-30 05:57:05] 2025-11-30 04:56:31,756 | INFO     | ***************************************
[2025-11-30 05:57:05] 2025-11-30 04:56:31,756 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-30 05:57:05] 2025-11-30 04:56:31,756 | INFO     | ***************************************
[2025-11-30 05:57:05] 2025-11-30 04:56:31,756 | INFO     | 
[2025-11-30 05:57:05] 2025-11-30 04:56:31,757 | INFO     | pilot is running in a VM
[2025-11-30 05:57:05] 2025-11-30 04:56:31,757 | INFO     | architecture information:
[2025-11-30 05:57:05] 2025-11-30 04:56:31,776 | INFO     | executing command: cat /etc/os-release
[2025-11-30 05:57:05] 2025-11-30 04:56:31,963 | INFO     | cat /etc/os-release:
[2025-11-30 05:57:05] NAME="CentOS Linux"
[2025-11-30 05:57:05] VERSION="7 (Core)"
[2025-11-30 05:57:05] ID="centos"
[2025-11-30 05:57:05] ID_LIKE="rhel fedora"
[2025-11-30 05:57:05] VERSION_ID="7"
[2025-11-30 05:57:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-30 05:57:05] ANSI_COLOR="0;31"
[2025-11-30 05:57:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-30 05:57:05] HOME_URL="https://www.centos.org/"
[2025-11-30 05:57:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-30 05:57:05] 
[2025-11-30 05:57:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-30 05:57:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-30 05:57:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-30 05:57:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-30 05:57:05] 
[2025-11-30 05:57:05] 2025-11-30 04:56:31,963 | INFO     | ***************************************
[2025-11-30 05:57:05] 2025-11-30 04:56:32,467 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-30 05:57:05] 2025-11-30 04:56:32,660 | INFO     | sufficient remaining disk space (488769585152 B)
[2025-11-30 05:57:05] 2025-11-30 04:56:32,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-30 05:57:05] 2025-11-30 04:56:32,660 | INFO     | current server update state: UPDATING_FINAL
[2025-11-30 05:57:05] 2025-11-30 04:56:32,661 | INFO     | update_server=False
[2025-11-30 05:57:05] 2025-11-30 04:56:32,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-30 05:57:05] 2025-11-30 04:56:32,662 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-30 05:57:05] 2025-11-30 04:56:32,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:57:05] 2025-11-30 04:56:32,663 | INFO     | aborting loop
[2025-11-30 05:57:05] 2025-11-30 04:56:33,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-30 05:57:05] 2025-11-30 04:56:33,076 | INFO     | all payload control threads have been joined
[2025-11-30 05:57:05] 2025-11-30 04:56:33,368 | INFO     | all data control threads have been joined
[2025-11-30 05:57:05] 2025-11-30 04:56:33,667 | INFO     | [job] retrieve thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:33,669 | INFO     | [job] job monitor thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:33,699 | INFO     | [payload] validate_pre thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:33,699 | INFO     | [job] validate thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:33,700 | INFO     | [payload] validate_post thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:33,777 | INFO     | [data] copytool_in thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:34,025 | INFO     | [job] create_data_payload thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:34,082 | INFO     | [payload] control thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:34,125 | INFO     | [payload] execute_payloads thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:34,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-30 05:57:05] 2025-11-30 04:56:34,163 | INFO     | all job control threads have been joined
[2025-11-30 05:57:05] 2025-11-30 04:56:34,184 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:34,374 | INFO     | [data] control thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:34,669 | INFO     | [data] copytool_out thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:35,140 | INFO     | [job] queue monitor thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:35,168 | INFO     | [payload] failed_post thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:35,169 | INFO     | [job] control thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:37,012 | INFO     | [data] queue_monitor thread has finished
[2025-11-30 05:57:05] 2025-11-30 04:56:49,898 | INFO     | [monitor] cgroup control has ended
[2025-11-30 05:57:05] 2025-11-30 04:56:51,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140504040376128)>', '<ExcThread(monitor, started 140503471351552)>']
[2025-11-30 05:57:05] 2025-11-30 04:56:56,120 | INFO     | all workflow threads have been joined
[2025-11-30 05:57:05] 2025-11-30 04:56:56,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-30 05:57:05] 2025-11-30 04:56:56,120 | INFO     | traces error code: 0
[2025-11-30 05:57:05] 2025-11-30 04:56:56,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-30 05:57:05] 2025-11-30 04:57:01,189 | INFO     | PID=26881 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-30 05:57:05] 2025-11-30 04:57:01,189 | INFO     | .. there are 9 such processes running
[2025-11-30 05:57:05] 2025-11-30 04:57:01,190 | INFO     | found 0 job(s) in 20 queues
[2025-11-30 05:57:05] 2025-11-30 04:57:01,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-30 05:57:05] 2025-11-30 04:57:01,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-30 05:57:05] 2025-11-30 04:57:01,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-30 05:57:05] 2025-11-30 04:57:01,190 | INFO     | [monitor] control thread has ended
[2025-11-30 05:57:05] 2025-11-30 04:57:01,479 [wrapper] ==== pilot stdout END ====
[2025-11-30 05:57:05] 2025-11-30 04:57:01,580 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-30 05:57:05] 2025-11-30 04:57:01,648 [wrapper] pilotpid: 26881
[2025-11-30 05:57:05] 2025-11-30 04:57:01,747 [wrapper] Pilot exit status: 0
[2025-11-30 05:57:05] 2025-11-30 04:57:02,127 [wrapper] pandaids: 6898000233
[2025-11-30 05:57:05] 2025-11-30 04:57:03,020 [wrapper] cleanup supervisor_pilot 16344 26882
[2025-11-30 05:57:05] 2025-11-30 04:57:03,102 [wrapper] Test setup, not cleaning
[2025-11-30 05:57:05] 2025-11-30 04:57:03,171 [wrapper] apfmon messages muted
[2025-11-30 05:57:05] 2025-11-30 04:57:03,253 [wrapper] ==== wrapper stdout END ====
[2025-11-30 05:57:05] 2025-11-30 04:57:03,315 [wrapper] ==== wrapper stderr END ====
[2025-11-30 05:57:05]  *** Error codes and diagnostics ***
[2025-11-30 05:57:05]     "exeErrorCode": 0,
[2025-11-30 05:57:05]     "exeErrorDiag": "",
[2025-11-30 05:57:05]     "pilotErrorCode": 0,
[2025-11-30 05:57:05]     "pilotErrorDiag": "",
[2025-11-30 05:57:05]  *** Listing of results directory ***
[2025-11-30 05:57:05] total 1320692
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc    576529 Nov 26 03:38 pilot3.tar.gz
[2025-11-30 05:57:05] -rwx------. 1 boinc boinc     36292 Nov 26 03:41 runpilot2-wrapper.sh
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc      5112 Nov 26 03:41 queuedata.json
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc       100 Nov 29 08:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-30 05:57:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 29 08:14 run_atlas
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc       105 Nov 29 08:14 job.xml
[2025-11-30 05:57:05] -rw-r--r--. 2 boinc boinc 410051129 Nov 29 08:14 EVNT.47483658._003154.pool.root.1
[2025-11-30 05:57:05] -rw-r--r--. 2 boinc boinc     15847 Nov 29 08:14 start_atlas.sh
[2025-11-30 05:57:05] drwxrwx--x. 2 boinc boinc        68 Nov 29 08:14 shared
[2025-11-30 05:57:05] -rw-r--r--. 2 boinc boinc    590105 Nov 29 08:14 input.tar.gz
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc      6393 Nov 29 08:14 init_data.xml
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc         0 Nov 29 08:14 boinc_lockfile
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc      2785 Nov 29 08:14 pandaJob.out
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc    991810 Nov 29 08:18 agis_schedconf.cvmfs.json
[2025-11-30 05:57:05] drwx------. 5 boinc boinc      4096 Nov 29 08:18 pilot3
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc       533 Nov 30 05:37 boinc_task_state.xml
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc 912896991 Nov 30 05:53 HITS.47556173._001109.pool.root.1
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc      1028 Nov 30 05:54 memory_monitor_summary.json
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc   1516240 Nov 30 05:54 agis_ddmendpoints.agis.ALL.json
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc   2375551 Nov 30 05:54 log.47556173._001109.job.log.tgz.1
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc        95 Nov 30 05:56 pilot_heartbeat.json
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc      8626 Nov 30 05:56 heartbeat.json
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc      8192 Nov 30 05:56 boinc_mmap_file
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc        29 Nov 30 05:56 wrapper_checkpoint.txt
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc       820 Nov 30 05:57 pilotlog.txt
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc  10389996 Nov 30 05:57 log.47556173._001109.job.log.1
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc       353 Nov 30 05:57 output.list
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc       620 Nov 30 05:57 runtime_log
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc  12789760 Nov 30 05:57 result.tar.gz
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc      8833 Nov 30 05:57 runtime_log.err
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc       662 Nov 30 05:57 qZELDmreKi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbnJKDm0tExgm.diag
[2025-11-30 05:57:05] -rw-r--r--. 1 boinc boinc     21220 Nov 30 05:57 stderr.txt
[2025-11-30 05:57:05] HITS file was successfully produced:
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc 912896991 Nov 30 05:53 shared/HITS.pool.root.1
[2025-11-30 05:57:05]  *** Contents of shared directory: ***
[2025-11-30 05:57:05] total 1305036
[2025-11-30 05:57:05] -rw-r--r--. 2 boinc boinc 410051129 Nov 29 08:14 ATLAS.root_0
[2025-11-30 05:57:05] -rw-r--r--. 2 boinc boinc     15847 Nov 29 08:14 start_atlas.sh
[2025-11-30 05:57:05] -rw-r--r--. 2 boinc boinc    590105 Nov 29 08:14 input.tar.gz
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc 912896991 Nov 30 05:53 HITS.pool.root.1
[2025-11-30 05:57:05] -rw-------. 1 boinc boinc  12789760 Nov 30 05:57 result.tar.gz
05:57:07 (23065): run_atlas exited; CPU time 292394.124055
05:57:07 (23065): called boinc_finish(0)

</stderr_txt>
]]>

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