Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
09:32:46 (2967488): wrapper (7.7.26015): starting
09:32:46 (2967488): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 09:32:46] Arguments: --nthreads 12
[2025-11-27 09:32:46] Threads: 12
[2025-11-27 09:32:46] Checking for CVMFS
[2025-11-27 09:32:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:32:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:32:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:32:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:32:47] 2.13.2.0 2543092 511 50752 153371 0 81 12556342 16777217 1038 130560 0 548598 99.990 27758 2407 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-27 09:32:47] CVMFS is ok
[2025-11-27 09:32:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:32:47] Checking for apptainer binary...
[2025-11-27 09:32:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:32:47] Running /usr/bin/apptainer --version
[2025-11-27 09:32:47] apptainer version 1.3.0-bp160.1.36
[2025-11-27 09:32:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:32:47] boinc-runner
[2025-11-27 09:32:47] apptainer works
[2025-11-27 09:32:47] Set ATHENA_PROC_NUMBER=12
[2025-11-27 09:32:47] Set ATHENA_CORE_NUMBER=12
[2025-11-27 09:32:47] Starting ATLAS job with PandaID=6898271595
[2025-11-27 09:32:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:51:50]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:51:50] 2025-11-27 18:18:22,943 | INFO     | monitor loop #756: job 0:6898271595 is in state 'finished'
[2025-11-27 17:51:50] 2025-11-27 18:18:22,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:51:50] 2025-11-27 18:18:24,603 | INFO     | time since job start (9930s) is within the limit (172800.0s)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,143 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:51:50] 2025-11-27 18:18:25,146 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3867.0055312500003
[2025-11-27 17:51:50] 2025-11-27 18:18:25,150 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6898271595/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,150 | INFO     | extracted standard info from prmon json
[2025-11-27 17:51:50] 2025-11-27 18:18:25,150 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:51:50] 2025-11-27 18:18:25,150 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:51:50] 2025-11-27 18:18:25,152 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:51:50] 2025-11-27 18:18:25,152 | INFO     | sum of square deviations: 1342841922.0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | sum of deviations: 44458195069.99999
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | mean x: 1764262533.0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | mean y: 3557642.6871165643
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | intersect: -58406837923.44588
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | chi2: 4.196653326823228
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | sum of square deviations: 1223016419.5
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | sum of deviations: 100115468132.50003
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | mean x: 1764262380.5
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | mean y: 3627978.905063291
[2025-11-27 17:51:50] 2025-11-27 18:18:25,153 | INFO     | intersect: -144417944222.49448
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | chi2: 1.6001620395711347
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | current chi2=1.6001620395711347 (change=61.87052122357646 %)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | sum of square deviations: 1110539892.0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | sum of deviations: 93580773500.99998
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | mean x: 1764262228.0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | mean y: 3619120.4901960786
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | intersect: -148663731907.75867
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | chi2: 1.600813173701733
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | current chi2=1.600813173701733 (change=-0.04069176211509654 %)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,154 | INFO     | right removable region: 152
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | sum of square deviations: 1223016419.5
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | sum of deviations: 5815051065.999994
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | mean x: 1764262685.5
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | mean y: 3606179.8860759493
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | intersect: -8384897397.371734
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | chi2: 2.6889455001378844
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | current chi2=2.6889455001378844 (change=35.9264325468276 %)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,155 | INFO     | sum of square deviations: 1110539892.0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | sum of deviations: 1329507809.9999962
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | mean x: 1764262838.0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | mean y: 3612228.843137255
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | intersect: -2108514709.5142992
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | chi2: 2.6900887398138478
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | current chi2=2.6900887398138478 (change=-0.042516282903643496 %)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | left removable region: 20
[2025-11-27 17:51:50] 2025-11-27 18:18:25,156 | INFO     | sum of square deviations: 713140813.0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | sum of deviations: 40552399443.5
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | mean x: 1764262807.5
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | mean y: 3695668.143939394
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | intersect: -100320235859.59874
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | chi2: 0.010727272963555932
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | current memory leak: 56.86 B/s (using 132 data points, chi2=0.01)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | could have reported an average CPU frequency of 4029 MHz (9 samples)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | ..............................
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | . Timing measurements:
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | . get job = 0 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | . initial setup = 2 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | . payload setup = 3 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | . stage-in = 0 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | . payload execution = 9902 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,157 | INFO     | . stage-out = 1 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,158 | INFO     | . log creation = 0 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,158 | INFO     | ..............................
[2025-11-27 17:51:50] 2025-11-27 18:18:25,202 | INFO     | 
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | job summary report
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | --------------------------------------------------
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | PanDA job id: 6898271595
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | task id: 47556161
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | errors: (none)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | pilot state: finished 
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | transexitcode: 0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | exeerrorcode: 0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | exeerrordiag: 
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | exitcode: 0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | exitmsg: OK
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | cpuconsumptiontime: 114832 s
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | nevents: 1000
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | neventsw: 0
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | pid: 2978043
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | pgrp: 2978043
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | corecount: 12
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | event service: False
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | sizes: {0: 2284309, 1: 2284309, 2: 2284599, 11: 2284627, 9909: 2314307, 9910: 2323301, 9913: 2323485, 9918: 2323795}
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | --------------------------------------------------
[2025-11-27 17:51:50] 2025-11-27 18:18:25,203 | INFO     | 
[2025-11-27 17:51:50] 2025-11-27 18:18:25,204 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,219 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,219 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,219 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:51:50] 2025-11-27 18:18:25,219 | INFO     | job 6898271595 has completed (purged errors)
[2025-11-27 17:51:50] 2025-11-27 18:18:25,219 | INFO     | overall cleanup function is called
[2025-11-27 17:51:50] 2025-11-27 18:18:26,236 | INFO     | --- collectZombieJob: --- 10, [2978043]
[2025-11-27 17:51:50] 2025-11-27 18:18:26,236 | INFO     | zombie collector waiting for pid 2978043
[2025-11-27 17:51:50] 2025-11-27 18:18:26,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:51:50] 2025-11-27 18:18:26,236 | INFO     | collected zombie processes
[2025-11-27 17:51:50] 2025-11-27 18:18:26,236 | INFO     | will attempt to kill all subprocesses of pid=2978043
[2025-11-27 17:51:50] 2025-11-27 18:18:26,310 | INFO     | process IDs to be killed: [2978043] (in reverse order)
[2025-11-27 17:51:50] 2025-11-27 18:18:26,357 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:51:50] 2025-11-27 18:18:26,357 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:51:50] 2025-11-27 18:18:26,362 | INFO     | did not find any defunct processes belonging to 2978043
[2025-11-27 17:51:50] 2025-11-27 18:18:26,365 | INFO     | did not find any defunct processes belonging to 2978043
[2025-11-27 17:51:50] 2025-11-27 18:18:26,366 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:51:50] 2025-11-27 18:18:26,366 | INFO     | ready for new job
[2025-11-27 17:51:50] 2025-11-27 18:18:26,366 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:51:50] 2025-11-27 18:18:26,368 | INFO     | ***************************************
[2025-11-27 17:51:50] 2025-11-27 18:18:26,369 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:51:50] 2025-11-27 18:18:26,369 | INFO     | ***************************************
[2025-11-27 17:51:50] 2025-11-27 18:18:26,369 | INFO     | 
[2025-11-27 17:51:50] 2025-11-27 18:18:26,370 | INFO     | architecture information:
[2025-11-27 17:51:50] 2025-11-27 18:18:26,371 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:51:50] 2025-11-27 18:18:26,382 | INFO     | cat /etc/os-release:
[2025-11-27 17:51:50] NAME="CentOS Linux"
[2025-11-27 17:51:50] VERSION="7 (Core)"
[2025-11-27 17:51:50] ID="centos"
[2025-11-27 17:51:50] ID_LIKE="rhel fedora"
[2025-11-27 17:51:50] VERSION_ID="7"
[2025-11-27 17:51:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:51:50] ANSI_COLOR="0;31"
[2025-11-27 17:51:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:51:50] HOME_URL="https://www.centos.org/"
[2025-11-27 17:51:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:51:50] 
[2025-11-27 17:51:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:51:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:51:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:51:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:51:50] 
[2025-11-27 17:51:50] 2025-11-27 18:18:26,382 | INFO     | ***************************************
[2025-11-27 17:51:50] 2025-11-27 18:18:26,884 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-11-27 17:51:50] 2025-11-27 18:18:26,897 | INFO     | sufficient remaining disk space (3852222857216 B)
[2025-11-27 17:51:50] 2025-11-27 18:18:26,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:51:50] 2025-11-27 18:18:26,897 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:51:50] 2025-11-27 18:18:26,897 | INFO     | update_server=False
[2025-11-27 17:51:50] 2025-11-27 18:18:26,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:51:50] 2025-11-27 18:18:26,900 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:51:50] 2025-11-27 18:18:26,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:51:50] 2025-11-27 18:18:26,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:51:50] 2025-11-27 18:18:26,900 | INFO     | aborting loop
[2025-11-27 17:51:50] 2025-11-27 18:18:27,039 | INFO     | all payload control threads have been joined
[2025-11-27 17:51:50] 2025-11-27 18:18:27,697 | INFO     | all data control threads have been joined
[2025-11-27 17:51:50] 2025-11-27 18:18:27,843 | INFO     | all job control threads have been joined
[2025-11-27 17:51:50] 2025-11-27 18:18:27,904 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:27,905 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:27,905 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:27,969 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:51:50] 2025-11-27 18:18:28,044 | INFO     | [payload] control thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,614 | INFO     | [job] validate thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,617 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,702 | INFO     | [data] control thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,724 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,794 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,848 | INFO     | [job] control thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:28,905 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:29,377 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:30,036 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:30,905 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:37,556 | INFO     | job.realtimelogging is not enabled
[2025-11-27 17:51:50] 2025-11-27 18:18:38,561 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:51:50] 2025-11-27 18:18:57,750 | INFO     | PID=2971349 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:51:50] 2025-11-27 18:18:57,750 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:51:50] 2025-11-27 18:18:57,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:51:50] 2025-11-27 18:18:57,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:51:50] 2025-11-27 18:19:09,989 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:51:50] 2025-11-27 18:19:10,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140629929932608)>', '<ExcThread(monitor, started 140629656966912)>']
[2025-11-27 17:51:50] 2025-11-27 18:19:10,815 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:51:50] 2025-11-27 18:19:10,815 | INFO     | [monitor] control thread has ended
[2025-11-27 17:51:50] 2025-11-27 18:19:15,221 | INFO     | all workflow threads have been joined
[2025-11-27 17:51:50] 2025-11-27 18:19:15,221 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:51:50] 2025-11-27 18:19:15,221 | INFO     | traces error code: 0
[2025-11-27 17:51:50] 2025-11-27 18:19:15,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:51:50] 2025-11-27 18:19:15,300 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:51:50] 2025-11-27 18:19:15,303 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:51:50] 2025-11-27 18:19:15,305 [wrapper] pilotpid: 2971349
[2025-11-27 17:51:50] 2025-11-27 18:19:15,307 [wrapper] Pilot exit status: 0
[2025-11-27 17:51:50] 2025-11-27 18:19:15,314 [wrapper] pandaids: 6898271595
[2025-11-27 17:51:50] 2025-11-27 18:19:15,340 [wrapper] cleanup supervisor_pilot 3022856 2971350
[2025-11-27 17:51:50] 2025-11-27 18:19:15,342 [wrapper] Test setup, not cleaning
[2025-11-27 17:51:50] 2025-11-27 18:19:15,345 [wrapper] apfmon messages muted
[2025-11-27 17:51:50] 2025-11-27 18:19:15,347 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:51:50] 2025-11-27 18:19:15,348 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:51:50]  *** Error codes and diagnostics ***
[2025-11-27 17:51:50]     "exeErrorCode": 0,
[2025-11-27 17:51:50]     "exeErrorDiag": "",
[2025-11-27 17:51:50]     "pilotErrorCode": 0,
[2025-11-27 17:51:50]     "pilotErrorDiag": "",
[2025-11-27 17:51:50]  *** Listing of results directory ***
[2025-11-27 17:51:50] total 1318304
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc    576529 Nov 26 09:05 pilot3.tar.gz
[2025-11-27 17:51:50] -rwx------. 1 boinc boinc     36292 Nov 26 09:23 runpilot2-wrapper.sh
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc      5112 Nov 26 09:23 queuedata.json
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc       100 Nov 27 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:51:50] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 09:32 run_atlas
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc       105 Nov 27 09:32 job.xml
[2025-11-27 17:51:50] -rw-r--r--. 2 boinc boinc    590105 Nov 27 09:32 input.tar.gz
[2025-11-27 17:51:50] -rw-r--r--. 2 boinc boinc 413044292 Nov 27 09:32 EVNT.47483658._002542.pool.root.1
[2025-11-27 17:51:50] -rw-r--r--. 2 boinc boinc     15847 Nov 27 09:32 start_atlas.sh
[2025-11-27 17:51:50] drwxrwx--x. 1 boinc boinc        76 Nov 27 09:32 shared
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc     10032 Nov 27 09:32 init_data.xml
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc         0 Nov 27 09:32 boinc_setup_complete
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc         0 Nov 27 09:32 boinc_lockfile
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc      2783 Nov 27 09:32 pandaJob.out
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc        63 Nov 27 09:32 setup.sh.local
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc    991572 Nov 27 09:32 agis_schedconf.cvmfs.json
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc   1516240 Nov 27 09:32 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:51:50] drwx------. 1 boinc boinc       414 Nov 27 09:32 pilot3
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc       531 Nov 27 12:13 boinc_task_state.xml
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc 926253692 Nov 27 12:17 HITS.47556161._005241.pool.root.1
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc        95 Nov 27 12:17 pilot_heartbeat.json
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc      1041 Nov 27 12:18 memory_monitor_summary.json
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc   1935384 Nov 27 12:18 log.47556161._005241.job.log.tgz.1
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc      8594 Nov 27 12:18 heartbeat.json
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc      4822 Nov 27 12:19 pilotlog.txt
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc   1433391 Nov 27 12:19 log.47556161._005241.job.log.1
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc       353 Nov 27 12:19 output.list
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc       620 Nov 27 12:19 runtime_log
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc   3389440 Nov 27 12:19 result.tar.gz
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc      9396 Nov 27 12:19 runtime_log.err
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc       658 Nov 27 12:19 nHOLDm3XWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmO4MKDm3Bjonm.diag
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc      8192 Nov 27 17:51 boinc_mmap_file
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc     20960 Nov 27 17:51 stderr.txt
[2025-11-27 17:51:50] -rw-r--r--. 1 boinc boinc        28 Nov 27 17:51 wrapper_checkpoint.txt
[2025-11-27 17:51:50] HITS file was successfully produced:
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc 926253692 Nov 27 12:17 shared/HITS.pool.root.1
[2025-11-27 17:51:50]  *** Contents of shared directory: ***
[2025-11-27 17:51:50] total 1311820
[2025-11-27 17:51:50] -rw-r--r--. 2 boinc boinc    590105 Nov 27 09:32 input.tar.gz
[2025-11-27 17:51:50] -rw-r--r--. 2 boinc boinc 413044292 Nov 27 09:32 ATLAS.root_0
[2025-11-27 17:51:50] -rw-r--r--. 2 boinc boinc     15847 Nov 27 09:32 start_atlas.sh
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc 926253692 Nov 27 12:17 HITS.pool.root.1
[2025-11-27 17:51:50] -rw-------. 1 boinc boinc   3389440 Nov 27 12:19 result.tar.gz
17:51:52 (2967488): run_atlas exited; CPU time 114738.648457
17:51:52 (2967488): called boinc_finish(0)

</stderr_txt>
]]>

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