Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
06:40:19 (2899746): wrapper (7.7.26015): starting
06:40:19 (2899746): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 06:40:19] Arguments: --nthreads 12
[2025-11-27 06:40:19] Threads: 12
[2025-11-27 06:40:19] Checking for CVMFS
[2025-11-27 06:40:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:40:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:40:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:40:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:40:19] 2.13.2.0 2543092 339 50712 153364 1 90 12527737 16777217 798 130560 0 390183 99.988 21269 2471 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-11-27 06:40:19] CVMFS is ok
[2025-11-27 06:40:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:40:19] Checking for apptainer binary...
[2025-11-27 06:40:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:40:19] Running /usr/bin/apptainer --version
[2025-11-27 06:40:19] apptainer version 1.3.0-bp160.1.36
[2025-11-27 06:40:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:40:20] boinc-runner
[2025-11-27 06:40:20] apptainer works
[2025-11-27 06:40:20] Set ATHENA_PROC_NUMBER=12
[2025-11-27 06:40:20] Set ATHENA_CORE_NUMBER=12
[2025-11-27 06:40:20] Starting ATLAS job with PandaID=6897139681
[2025-11-27 06:40:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 09:39:49]  *** The last 200 lines of the pilot log: ***
[2025-11-27 09:39:49] 2025-11-27 15:38:49,477 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 09:39:49] 2025-11-27 15:38:49,480 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3882.8787187499997
[2025-11-27 09:39:49] 2025-11-27 15:38:49,483 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6897139681/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,483 | INFO     | extracted standard info from prmon json
[2025-11-27 09:39:49] 2025-11-27 15:38:49,483 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 09:39:49] 2025-11-27 15:38:49,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 09:39:49] 2025-11-27 15:38:49,485 | INFO     | fitting pss+swap vs Time
[2025-11-27 09:39:49] 2025-11-27 15:38:49,485 | INFO     | sum of square deviations: 1690464637.9488623
[2025-11-27 09:39:49] 2025-11-27 15:38:49,486 | INFO     | sum of deviations: 44604999308.65906
[2025-11-27 09:39:49] 2025-11-27 15:38:49,486 | INFO     | mean x: 1764252582.5170455
[2025-11-27 09:39:49] 2025-11-27 15:38:49,486 | INFO     | mean y: 3463725.1136363638
[2025-11-27 09:39:49] 2025-11-27 15:38:49,486 | INFO     | intersect: -46548521721.300255
[2025-11-27 09:39:49] 2025-11-27 15:38:49,486 | INFO     | chi2: 4.548026605522883
[2025-11-27 09:39:49] 2025-11-27 15:38:49,486 | INFO     | sum of square deviations: 1550444322.9473705
[2025-11-27 09:39:49] 2025-11-27 15:38:49,487 | INFO     | sum of deviations: 104492647612.75444
[2025-11-27 09:39:49] 2025-11-27 15:38:49,487 | INFO     | mean x: 1764252430.0175438
[2025-11-27 09:39:49] 2025-11-27 15:38:49,487 | INFO     | mean y: 3528480.7485380117
[2025-11-27 09:39:49] 2025-11-27 15:38:49,487 | INFO     | intersect: -118898778903.83382
[2025-11-27 09:39:49] 2025-11-27 15:38:49,487 | INFO     | chi2: 1.701817288717066
[2025-11-27 09:39:49] 2025-11-27 15:38:49,487 | INFO     | current chi2=1.701817288717066 (change=62.58119320035487 %)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,487 | INFO     | sum of square deviations: 1418377645.4457865
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | sum of deviations: 97874262395.54213
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | mean x: 1764252277.5180724
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | mean y: 3520841.8192771086
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | intersect: -121737604235.95653
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | chi2: 1.7025371714136455
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | current chi2=1.7025371714136455 (change=-0.04230082167764396 %)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | right removable region: 165
[2025-11-27 09:39:49] 2025-11-27 15:38:49,488 | INFO     | sum of square deviations: 1550442492.9473705
[2025-11-27 09:39:49] 2025-11-27 15:38:49,489 | INFO     | sum of deviations: 1354392490.228096
[2025-11-27 09:39:49] 2025-11-27 15:38:49,489 | INFO     | mean x: 1764252735.0175438
[2025-11-27 09:39:49] 2025-11-27 15:38:49,489 | INFO     | mean y: 3510314.590643275
[2025-11-27 09:39:49] 2025-11-27 15:38:49,489 | INFO     | intersect: -1537656588.433119
[2025-11-27 09:39:49] 2025-11-27 15:38:49,489 | INFO     | chi2: 2.951119428067024
[2025-11-27 09:39:49] 2025-11-27 15:38:49,489 | INFO     | current chi2=2.951119428067024 (change=35.11208961523354 %)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,489 | INFO     | sum of square deviations: 1418373985.4457865
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | sum of deviations: -7007862945.072275
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | mean x: 1764252887.5180724
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | mean y: 3519946.0240963856
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | intersect: 8720291801.007635
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | chi2: 2.9333857843636064
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | current chi2=2.9333857843636064 (change=0.6009124379975687 %)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | left removable region: 20
[2025-11-27 09:39:49] 2025-11-27 15:38:49,490 | INFO     | sum of square deviations: 945295530.9379332
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | sum of deviations: 33885768564.924152
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | mean x: 1764252857.0206897
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | mean y: 3600002.3586206897
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | intersect: -63239123618.361206
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | chi2: 0.006742849305498482
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | current memory leak: 35.85 B/s (using 145 data points, chi2=0.01)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | could have reported an average CPU frequency of 4011 MHz (9 samples)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | ..............................
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | . Timing measurements:
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | . get job = 0 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | . initial setup = 2 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,491 | INFO     | . payload setup = 2 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,492 | INFO     | . stage-in = 0 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,492 | INFO     | . payload execution = 10678 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,492 | INFO     | . stage-out = 1 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,492 | INFO     | . log creation = 0 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,492 | INFO     | ..............................
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | 
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | job summary report
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | --------------------------------------------------
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | PanDA job id: 6897139681
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | task id: 47556161
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | errors: (none)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | pilot state: finished 
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | transexitcode: 0
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | exeerrorcode: 0
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | exeerrordiag: 
[2025-11-27 09:39:49] 2025-11-27 15:38:49,541 | INFO     | exitcode: 0
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | exitmsg: OK
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | cpuconsumptiontime: 120591 s
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | nevents: 1000
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | neventsw: 0
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | pid: 2910299
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | pgrp: 2910299
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | corecount: 12
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | event service: False
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | sizes: {0: 2284265, 2: 2284527, 10: 2284555, 10685: 2314650, 10686: 2323644, 10688: 2323700, 10690: 2324138}
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | --------------------------------------------------
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | 
[2025-11-27 09:39:49] 2025-11-27 15:38:49,542 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,555 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | job 6897139681 has completed (purged errors)
[2025-11-27 09:39:49] 2025-11-27 15:38:49,556 | INFO     | overall cleanup function is called
[2025-11-27 09:39:49] 2025-11-27 15:38:50,571 | INFO     | --- collectZombieJob: --- 10, [2910299]
[2025-11-27 09:39:49] 2025-11-27 15:38:50,571 | INFO     | zombie collector waiting for pid 2910299
[2025-11-27 09:39:49] 2025-11-27 15:38:50,571 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 09:39:49] 2025-11-27 15:38:50,571 | INFO     | collected zombie processes
[2025-11-27 09:39:49] 2025-11-27 15:38:50,571 | INFO     | will attempt to kill all subprocesses of pid=2910299
[2025-11-27 09:39:49] 2025-11-27 15:38:50,648 | INFO     | process IDs to be killed: [2910299] (in reverse order)
[2025-11-27 09:39:49] 2025-11-27 15:38:50,685 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 09:39:49] 2025-11-27 15:38:50,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 09:39:49] 2025-11-27 15:38:50,689 | INFO     | did not find any defunct processes belonging to 2910299
[2025-11-27 09:39:49] 2025-11-27 15:38:50,692 | INFO     | did not find any defunct processes belonging to 2910299
[2025-11-27 09:39:49] 2025-11-27 15:38:50,692 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 09:39:49] 2025-11-27 15:38:50,692 | INFO     | ready for new job
[2025-11-27 09:39:49] 2025-11-27 15:38:50,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 09:39:49] 2025-11-27 15:38:50,694 | INFO     | ***************************************
[2025-11-27 09:39:49] 2025-11-27 15:38:50,694 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 09:39:49] 2025-11-27 15:38:50,695 | INFO     | ***************************************
[2025-11-27 09:39:49] 2025-11-27 15:38:50,695 | INFO     | 
[2025-11-27 09:39:49] 2025-11-27 15:38:50,696 | INFO     | architecture information:
[2025-11-27 09:39:49] 2025-11-27 15:38:50,696 | INFO     | executing command: cat /etc/os-release
[2025-11-27 09:39:49] 2025-11-27 15:38:50,705 | INFO     | cat /etc/os-release:
[2025-11-27 09:39:49] NAME="CentOS Linux"
[2025-11-27 09:39:49] VERSION="7 (Core)"
[2025-11-27 09:39:49] ID="centos"
[2025-11-27 09:39:49] ID_LIKE="rhel fedora"
[2025-11-27 09:39:49] VERSION_ID="7"
[2025-11-27 09:39:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 09:39:49] ANSI_COLOR="0;31"
[2025-11-27 09:39:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 09:39:49] HOME_URL="https://www.centos.org/"
[2025-11-27 09:39:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 09:39:49] 
[2025-11-27 09:39:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 09:39:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 09:39:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 09:39:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 09:39:49] 
[2025-11-27 09:39:49] 2025-11-27 15:38:50,706 | INFO     | ***************************************
[2025-11-27 09:39:49] 2025-11-27 15:38:51,208 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-27 09:39:49] 2025-11-27 15:38:51,217 | INFO     | sufficient remaining disk space (3851962810368 B)
[2025-11-27 09:39:49] 2025-11-27 15:38:51,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 09:39:49] 2025-11-27 15:38:51,217 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 09:39:49] 2025-11-27 15:38:51,217 | INFO     | update_server=False
[2025-11-27 09:39:49] 2025-11-27 15:38:51,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 09:39:49] 2025-11-27 15:38:51,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:39:49] 2025-11-27 15:38:51,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 09:39:49] 2025-11-27 15:38:51,509 | INFO     | all job control threads have been joined
[2025-11-27 09:39:49] 2025-11-27 15:38:51,535 | INFO     | all payload control threads have been joined
[2025-11-27 09:39:49] 2025-11-27 15:38:51,578 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 09:39:49] 2025-11-27 15:38:51,578 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 09:39:49] 2025-11-27 15:38:51,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 09:39:49] 2025-11-27 15:38:51,579 | INFO     | will abort loop
[2025-11-27 09:39:49] 2025-11-27 15:38:51,714 | INFO     | all data control threads have been joined
[2025-11-27 09:39:49] 2025-11-27 15:38:52,222 | INFO     | [job] retrieve thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:52,223 | INFO     | [job] queue monitor thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:52,514 | INFO     | [job] control thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:52,541 | INFO     | [payload] control thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:52,584 | INFO     | [job] job monitor thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:52,706 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:52,719 | INFO     | [data] control thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:52,990 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 09:39:49] 2025-11-27 15:38:53,123 | INFO     | [job] validate thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:53,154 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:53,223 | INFO     | [data] copytool_out thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:53,250 | INFO     | [payload] validate_post thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:53,251 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:53,698 | INFO     | [data] copytool_in thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:53,725 | INFO     | [payload] failed_post thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:38:56,995 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:39:01,569 | INFO     | job.realtimelogging is not enabled
[2025-11-27 09:39:49] 2025-11-27 15:39:02,574 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 09:39:49] 2025-11-27 15:39:20,774 | INFO     | PID=2903607 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 09:39:49] 2025-11-27 15:39:20,774 | INFO     | .. there are 2 such processes running
[2025-11-27 09:39:49] 2025-11-27 15:39:20,774 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 09:39:49] 2025-11-27 15:39:20,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 09:39:49] 2025-11-27 15:39:20,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 09:39:49] 2025-11-27 15:39:43,892 | INFO     | [monitor] cgroup control has ended
[2025-11-27 09:39:49] 2025-11-27 15:39:44,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285443118912)>', '<ExcThread(monitor, started 140284948104960)>']
[2025-11-27 09:39:49] 2025-11-27 15:39:44,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 09:39:49] 2025-11-27 15:39:44,875 | INFO     | [monitor] control thread has ended
[2025-11-27 09:39:49] 2025-11-27 15:39:49,361 | INFO     | all workflow threads have been joined
[2025-11-27 09:39:49] 2025-11-27 15:39:49,361 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 09:39:49] 2025-11-27 15:39:49,361 | INFO     | traces error code: 0
[2025-11-27 09:39:49] 2025-11-27 15:39:49,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 09:39:49] 2025-11-27 15:39:49,425 [wrapper] ==== pilot stdout END ====
[2025-11-27 09:39:49] 2025-11-27 15:39:49,426 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 09:39:49] 2025-11-27 15:39:49,428 [wrapper] pilotpid: 2903607
[2025-11-27 09:39:49] 2025-11-27 15:39:49,430 [wrapper] Pilot exit status: 0
[2025-11-27 09:39:49] 2025-11-27 15:39:49,435 [wrapper] pandaids: 6897139681
[2025-11-27 09:39:49] 2025-11-27 15:39:49,458 [wrapper] cleanup supervisor_pilot 2963942 2903608
[2025-11-27 09:39:49] 2025-11-27 15:39:49,460 [wrapper] Test setup, not cleaning
[2025-11-27 09:39:49] 2025-11-27 15:39:49,461 [wrapper] apfmon messages muted
[2025-11-27 09:39:49] 2025-11-27 15:39:49,462 [wrapper] ==== wrapper stdout END ====
[2025-11-27 09:39:49] 2025-11-27 15:39:49,463 [wrapper] ==== wrapper stderr END ====
[2025-11-27 09:39:49]  *** Error codes and diagnostics ***
[2025-11-27 09:39:49]     "exeErrorCode": 0,
[2025-11-27 09:39:49]     "exeErrorDiag": "",
[2025-11-27 09:39:49]     "pilotErrorCode": 0,
[2025-11-27 09:39:49]     "pilotErrorDiag": "",
[2025-11-27 09:39:49]  *** Listing of results directory ***
[2025-11-27 09:39:49] total 1315808
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc    576529 Nov 25 10:48 pilot3.tar.gz
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc      5112 Nov 25 10:55 queuedata.json
[2025-11-27 09:39:49] -rwx------. 1 boinc boinc     36292 Nov 25 10:56 runpilot2-wrapper.sh
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc       100 Nov 27 06:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 09:39:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 06:40 run_atlas
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc       105 Nov 27 06:40 job.xml
[2025-11-27 09:39:49] -rw-r--r--. 2 boinc boinc 411809887 Nov 27 06:40 EVNT.47483658._002194.pool.root.1
[2025-11-27 09:39:49] -rw-r--r--. 2 boinc boinc     15847 Nov 27 06:40 start_atlas.sh
[2025-11-27 09:39:49] drwxrwx--x. 1 boinc boinc        76 Nov 27 06:40 shared
[2025-11-27 09:39:49] -rw-r--r--. 2 boinc boinc    590105 Nov 27 06:40 input.tar.gz
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc     10032 Nov 27 06:40 init_data.xml
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc         0 Nov 27 06:40 boinc_setup_complete
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc         0 Nov 27 06:40 boinc_lockfile
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc      2786 Nov 27 06:40 pandaJob.out
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc        63 Nov 27 06:40 setup.sh.local
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc    991566 Nov 27 06:40 agis_schedconf.cvmfs.json
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc   1516240 Nov 27 06:40 agis_ddmendpoints.agis.ALL.json
[2025-11-27 09:39:49] drwx------. 1 boinc boinc       414 Nov 27 06:40 pilot3
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc       531 Nov 27 09:34 boinc_task_state.xml
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc 924647305 Nov 27 09:38 HITS.47556161._001779.pool.root.1
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc      1042 Nov 27 09:38 memory_monitor_summary.json
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc   1938941 Nov 27 09:38 log.47556161._001779.job.log.tgz.1
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc        95 Nov 27 09:38 pilot_heartbeat.json
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc      8600 Nov 27 09:38 heartbeat.json
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc      8192 Nov 27 09:39 boinc_mmap_file
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc        28 Nov 27 09:39 wrapper_checkpoint.txt
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc      5083 Nov 27 09:39 pilotlog.txt
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc   1572484 Nov 27 09:39 log.47556161._001779.job.log.1
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc       353 Nov 27 09:39 output.list
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc       620 Nov 27 09:39 runtime_log
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc   3532800 Nov 27 09:39 result.tar.gz
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc       660 Nov 27 09:39 zqENDmbWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxXJKDmpi0d0n.diag
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc      9397 Nov 27 09:39 runtime_log.err
[2025-11-27 09:39:49] -rw-r--r--. 1 boinc boinc     20976 Nov 27 09:39 stderr.txt
[2025-11-27 09:39:49] HITS file was successfully produced:
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc 924647305 Nov 27 09:38 shared/HITS.pool.root.1
[2025-11-27 09:39:49]  *** Contents of shared directory: ***
[2025-11-27 09:39:49] total 1309184
[2025-11-27 09:39:49] -rw-r--r--. 2 boinc boinc 411809887 Nov 27 06:40 ATLAS.root_0
[2025-11-27 09:39:49] -rw-r--r--. 2 boinc boinc     15847 Nov 27 06:40 start_atlas.sh
[2025-11-27 09:39:49] -rw-r--r--. 2 boinc boinc    590105 Nov 27 06:40 input.tar.gz
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc 924647305 Nov 27 09:38 HITS.pool.root.1
[2025-11-27 09:39:49] -rw-------. 1 boinc boinc   3532800 Nov 27 09:39 result.tar.gz
09:39:50 (2899746): run_atlas exited; CPU time 120498.657515
09:39:50 (2899746): called boinc_finish(0)

</stderr_txt>
]]>

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