Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:23:12 (8819): wrapper (7.7.26015): starting
07:23:12 (8819): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:23:12] Arguments: --nthreads 8
[2025-11-27 07:23:12] Threads: 8
[2025-11-27 07:23:12] Checking for CVMFS
[2025-11-27 07:23:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:23:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:23:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:23:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:23:12] 2.11.2.0 10816 119090 139388 153364 2 81 10949794 18432001 1885 130560 0 85867151 99.975 5041253 28732 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 07:23:12] CVMFS is ok
[2025-11-27 07:23:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:23:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:23:12] Further information can be found at the LHC@home message board.
[2025-11-27 07:23:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:23:12] Checking for apptainer binary...
[2025-11-27 07:23:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:23:12] Running /usr/bin/apptainer --version
[2025-11-27 07:23:13] apptainer version 1.3.2-1.el7
[2025-11-27 07:23:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:23:13] c-206-11.aglt2.org
[2025-11-27 07:23:13] apptainer works
[2025-11-27 07:23:13] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:23:13] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:23:13] Starting ATLAS job with PandaID=6898271940
[2025-11-27 07:23:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:46:25 (10667): wrapper (7.7.26015): starting
20:46:25 (10667): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 20:46:25] Arguments: --nthreads 8
[2025-11-27 20:46:25] Threads: 8
[2025-11-27 20:46:25] This job has been restarted, cleaning up previous attempt
[2025-11-27 20:46:25] Checking for CVMFS
[2025-11-27 20:46:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:46:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:46:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:46:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:46:25] 2.11.2.0 10816 119893 137560 153392 0 57 11117865 18432000 1 130560 0 86470958 99.975 5076797 28763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 20:46:25] CVMFS is ok
[2025-11-27 20:46:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 20:46:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 20:46:25] Further information can be found at the LHC@home message board.
[2025-11-27 20:46:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:46:25] Checking for apptainer binary...
[2025-11-27 20:46:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:46:25] Running /usr/bin/apptainer --version
[2025-11-27 20:46:25] apptainer version 1.3.2-1.el7
[2025-11-27 20:46:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:46:26] c-206-11.aglt2.org
[2025-11-27 20:46:26] apptainer works
[2025-11-27 20:46:26] Set ATHENA_PROC_NUMBER=8
[2025-11-27 20:46:26] Set ATHENA_CORE_NUMBER=8
[2025-11-27 20:46:26] Starting ATLAS job with PandaID=6898271940
[2025-11-27 20:46:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:20:43]  *** The last 200 lines of the pilot log: ***
[2025-11-28 16:20:43] 2025-11-28 21:20:24,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:20:43] 2025-11-28 21:20:24,969 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 16:20:43] 2025-11-28 21:20:24,974 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1718.0
[2025-11-28 16:20:43] 2025-11-28 21:20:24,978 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898271940/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:20:43] 2025-11-28 21:20:24,978 | INFO     | extracted standard info from prmon json
[2025-11-28 16:20:43] 2025-11-28 21:20:24,978 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:20:43] 2025-11-28 21:20:24,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:20:43] 2025-11-28 21:20:24,994 | INFO     | fitting pss+swap vs Time
[2025-11-28 16:20:43] 2025-11-28 21:20:24,996 | INFO     | sum of square deviations: 476535163035.4561
[2025-11-28 16:20:43] 2025-11-28 21:20:25,021 | INFO     | sum of deviations: 2368561503161.9214
[2025-11-28 16:20:43] 2025-11-28 21:20:25,021 | INFO     | mean x: 1764329594.3526864
[2025-11-28 16:20:43] 2025-11-28 21:20:25,021 | INFO     | mean y: 2870642.5259965337
[2025-11-28 16:20:43] 2025-11-28 21:20:25,021 | INFO     | intersect: -8766520328.444456
[2025-11-28 16:20:43] 2025-11-28 21:20:25,022 | INFO     | chi2: 4.923237985338908
[2025-11-28 16:20:43] 2025-11-28 21:20:25,023 | INFO     | sum of square deviations: 470368119609.3056
[2025-11-28 16:20:43] 2025-11-28 21:20:25,048 | INFO     | sum of deviations: 2673245149330.134
[2025-11-28 16:20:43] 2025-11-28 21:20:25,048 | INFO     | mean x: 1764329441.856397
[2025-11-28 16:20:43] 2025-11-28 21:20:25,048 | INFO     | mean y: 2878172.4856396867
[2025-11-28 16:20:43] 2025-11-28 21:20:25,048 | INFO     | intersect: -10024342903.170029
[2025-11-28 16:20:43] 2025-11-28 21:20:25,049 | INFO     | chi2: 2.796519980695847
[2025-11-28 16:20:43] 2025-11-28 21:20:25,050 | INFO     | current chi2=2.796519980695847 (change=43.19754622824029 %)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,051 | INFO     | sum of square deviations: 464254519045.6233
[2025-11-28 16:20:43] 2025-11-28 21:20:25,075 | INFO     | sum of deviations: 2777263569805.109
[2025-11-28 16:20:43] 2025-11-28 21:20:25,076 | INFO     | mean x: 1764329289.3601398
[2025-11-28 16:20:43] 2025-11-28 21:20:25,076 | INFO     | mean y: 2880762.1162587414
[2025-11-28 16:20:43] 2025-11-28 21:20:25,076 | INFO     | intersect: -10551690619.44636
[2025-11-28 16:20:43] 2025-11-28 21:20:25,077 | INFO     | chi2: 2.336722794731868
[2025-11-28 16:20:43] 2025-11-28 21:20:25,077 | INFO     | current chi2=2.336722794731868 (change=16.44176294601585 %)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,077 | INFO     | right removable region: 1143
[2025-11-28 16:20:43] 2025-11-28 21:20:25,078 | INFO     | sum of square deviations: 470367589520.0174
[2025-11-28 16:20:43] 2025-11-28 21:20:25,103 | INFO     | sum of deviations: 2086121225295.8838
[2025-11-28 16:20:43] 2025-11-28 21:20:25,103 | INFO     | mean x: 1764329746.8555264
[2025-11-28 16:20:43] 2025-11-28 21:20:25,104 | INFO     | mean y: 2877616.939077459
[2025-11-28 16:20:43] 2025-11-28 21:20:25,104 | INFO     | intersect: -7822078471.32387
[2025-11-28 16:20:43] 2025-11-28 21:20:25,105 | INFO     | chi2: 2.9668679576613455
[2025-11-28 16:20:43] 2025-11-28 21:20:25,105 | INFO     | current chi2=2.9668679576613455 (change=39.73746614531958 %)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,106 | INFO     | sum of square deviations: 464253529566.7754
[2025-11-28 16:20:43] 2025-11-28 21:20:25,131 | INFO     | sum of deviations: 1994034836981.9136
[2025-11-28 16:20:43] 2025-11-28 21:20:25,131 | INFO     | mean x: 1764329899.3575175
[2025-11-28 16:20:43] 2025-11-28 21:20:25,131 | INFO     | mean y: 2879913.3767482517
[2025-11-28 16:20:43] 2025-11-28 21:20:25,131 | INFO     | intersect: -7575167552.4781275
[2025-11-28 16:20:43] 2025-11-28 21:20:25,132 | INFO     | chi2: 2.8783811211206842
[2025-11-28 16:20:43] 2025-11-28 21:20:25,133 | INFO     | current chi2=2.8783811211206842 (change=2.982499990003317 %)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,133 | INFO     | left removable region: 20
[2025-11-28 16:20:43] 2025-11-28 21:20:25,134 | INFO     | sum of square deviations: 439154037249.2312
[2025-11-28 16:20:43] 2025-11-28 21:20:25,157 | INFO     | sum of deviations: 2268465374324.519
[2025-11-28 16:20:43] 2025-11-28 21:20:25,157 | INFO     | mean x: 1764329868.8673196
[2025-11-28 16:20:43] 2025-11-28 21:20:25,158 | INFO     | mean y: 2893438.2048085486
[2025-11-28 16:20:43] 2025-11-28 21:20:25,158 | INFO     | intersect: -9110813545.98173
[2025-11-28 16:20:43] 2025-11-28 21:20:25,159 | INFO     | chi2: 0.23232605637621306
[2025-11-28 16:20:43] 2025-11-28 21:20:25,159 | INFO     | current memory leak: 5.17 B/s (using 1123 data points, chi2=0.23)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,159 | INFO     | could have reported an average CPU frequency of 2568 MHz (42 samples)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | ..............................
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . Timing measurements:
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . get job = 0 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . initial setup = 2 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . payload setup = 7 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . stage-in = 0 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . payload execution = 70386 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . stage-out = 3 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | . log creation = 0 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,160 | INFO     | ..............................
[2025-11-28 16:20:43] 2025-11-28 21:20:25,345 | INFO     | time since job start (70426s) is within the limit (172800.0s)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,448 | INFO     | 
[2025-11-28 16:20:43] 2025-11-28 21:20:25,448 | INFO     | job summary report
[2025-11-28 16:20:43] 2025-11-28 21:20:25,448 | INFO     | --------------------------------------------------
[2025-11-28 16:20:43] 2025-11-28 21:20:25,448 | INFO     | PanDA job id: 6898271940
[2025-11-28 16:20:43] 2025-11-28 21:20:25,448 | INFO     | task id: 47556161
[2025-11-28 16:20:43] 2025-11-28 21:20:25,448 | INFO     | errors: (none)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | pilot state: finished 
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | transexitcode: 0
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | exeerrorcode: 0
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | exeerrordiag: 
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | exitcode: 0
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | exitmsg: OK
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | cpuconsumptiontime: 542877 s
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | nevents: 1000
[2025-11-28 16:20:43] 2025-11-28 21:20:25,449 | INFO     | neventsw: 0
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | pid: 8745
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | pgrp: 8745
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | corecount: 8
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | event service: False
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | sizes: {0: 2284144, 1: 2284343, 5: 2284605, 11: 2284661, 70397: 2341343, 70398: 2341342, 70401: 2350520, 70405: 2350576, 70410: 2350822}
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | --------------------------------------------------
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | 
[2025-11-28 16:20:43] 2025-11-28 21:20:25,450 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 16:20:43] 2025-11-28 21:20:25,473 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,473 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,473 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,474 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 16:20:43] 2025-11-28 21:20:25,475 | INFO     | job 6898271940 has completed (purged errors)
[2025-11-28 16:20:43] 2025-11-28 21:20:25,476 | INFO     | overall cleanup function is called
[2025-11-28 16:20:43] 2025-11-28 21:20:26,488 | INFO     | --- collectZombieJob: --- 10, [8745]
[2025-11-28 16:20:43] 2025-11-28 21:20:26,488 | INFO     | zombie collector waiting for pid 8745
[2025-11-28 16:20:43] 2025-11-28 21:20:26,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 16:20:43] 2025-11-28 21:20:26,489 | INFO     | collected zombie processes
[2025-11-28 16:20:43] 2025-11-28 21:20:26,489 | INFO     | will attempt to kill all subprocesses of pid=8745
[2025-11-28 16:20:43] 2025-11-28 21:20:26,604 | INFO     | process IDs to be killed: [8745] (in reverse order)
[2025-11-28 16:20:43] 2025-11-28 21:20:26,658 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 16:20:43] 2025-11-28 21:20:26,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 16:20:43] 2025-11-28 21:20:26,662 | INFO     | did not find any defunct processes belonging to 8745
[2025-11-28 16:20:43] 2025-11-28 21:20:26,666 | INFO     | did not find any defunct processes belonging to 8745
[2025-11-28 16:20:43] 2025-11-28 21:20:26,668 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 16:20:43] 2025-11-28 21:20:26,668 | INFO     | ready for new job
[2025-11-28 16:20:43] 2025-11-28 21:20:26,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 16:20:43] 2025-11-28 21:20:26,673 | INFO     | ***************************************
[2025-11-28 16:20:43] 2025-11-28 21:20:26,673 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 16:20:43] 2025-11-28 21:20:26,673 | INFO     | ***************************************
[2025-11-28 16:20:43] 2025-11-28 21:20:26,673 | INFO     | 
[2025-11-28 16:20:43] 2025-11-28 21:20:26,674 | INFO     | architecture information:
[2025-11-28 16:20:43] 2025-11-28 21:20:26,674 | INFO     | executing command: cat /etc/os-release
[2025-11-28 16:20:43] 2025-11-28 21:20:26,689 | INFO     | cat /etc/os-release:
[2025-11-28 16:20:43] NAME="CentOS Linux"
[2025-11-28 16:20:43] VERSION="7 (Core)"
[2025-11-28 16:20:43] ID="centos"
[2025-11-28 16:20:43] ID_LIKE="rhel fedora"
[2025-11-28 16:20:43] VERSION_ID="7"
[2025-11-28 16:20:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 16:20:43] ANSI_COLOR="0;31"
[2025-11-28 16:20:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 16:20:43] HOME_URL="https://www.centos.org/"
[2025-11-28 16:20:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 16:20:43] 
[2025-11-28 16:20:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 16:20:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 16:20:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 16:20:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 16:20:43] 
[2025-11-28 16:20:43] 2025-11-28 21:20:26,689 | INFO     | ***************************************
[2025-11-28 16:20:43] 2025-11-28 21:20:27,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 16:20:43] 2025-11-28 21:20:27,209 | INFO     | sufficient remaining disk space (24644681728 B)
[2025-11-28 16:20:43] 2025-11-28 21:20:27,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 16:20:43] 2025-11-28 21:20:27,210 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 16:20:43] 2025-11-28 21:20:27,210 | INFO     | update_server=False
[2025-11-28 16:20:43] 2025-11-28 21:20:27,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 16:20:43] 2025-11-28 21:20:27,210 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-28 16:20:43] 2025-11-28 21:20:27,211 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:20:43] 2025-11-28 21:20:27,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 16:20:43] 2025-11-28 21:20:27,211 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 16:20:43] 2025-11-28 21:20:27,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 16:20:43] 2025-11-28 21:20:27,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 16:20:43] 2025-11-28 21:20:27,392 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 16:20:43] 2025-11-28 21:20:27,393 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 16:20:43] 2025-11-28 21:20:27,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:20:43] 2025-11-28 21:20:27,393 | INFO     | will abort loop
[2025-11-28 16:20:43] 2025-11-28 21:20:27,562 | INFO     | all data control threads have been joined
[2025-11-28 16:20:43] 2025-11-28 21:20:28,036 | INFO     | all job control threads have been joined
[2025-11-28 16:20:43] 2025-11-28 21:20:28,216 | INFO     | [job] retrieve thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,216 | INFO     | [job] queue monitor thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,385 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,395 | INFO     | [job] job monitor thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,419 | INFO     | all payload control threads have been joined
[2025-11-28 16:20:43] 2025-11-28 21:20:28,565 | INFO     | [data] control thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,693 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,740 | INFO     | [data] copytool_in thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,878 | INFO     | [payload] failed_post thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:28,952 | INFO     | [job] validate thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:29,041 | INFO     | [job] control thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:29,153 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:29,196 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:29,215 | INFO     | [data] copytool_out thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:29,424 | INFO     | [payload] control thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:29,549 | INFO     | [payload] validate_post thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:30,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 16:20:43] 2025-11-28 21:20:34,088 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 16:20:43] 2025-11-28 21:20:36,908 | INFO     | [monitor] cgroup control has ended
[2025-11-28 16:20:43] 2025-11-28 21:20:38,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140381583976256)>', '<ExcThread(monitor, started 140380855064320)>']
[2025-11-28 16:20:43] 2025-11-28 21:20:39,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 16:20:43] 2025-11-28 21:20:39,263 | INFO     | [monitor] control thread has ended
[2025-11-28 16:20:43] 2025-11-28 21:20:43,544 | INFO     | all workflow threads have been joined
[2025-11-28 16:20:43] 2025-11-28 21:20:43,545 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 16:20:43] 2025-11-28 21:20:43,545 | INFO     | traces error code: 0
[2025-11-28 16:20:43] 2025-11-28 21:20:43,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 16:20:43] 2025-11-28 21:20:43,641 [wrapper] ==== pilot stdout END ====
[2025-11-28 16:20:43] 2025-11-28 21:20:43,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 16:20:43] 2025-11-28 21:20:43,647 [wrapper] pilotpid: 21777
[2025-11-28 16:20:43] 2025-11-28 21:20:43,650 [wrapper] Pilot exit status: 0
[2025-11-28 16:20:43] 2025-11-28 21:20:43,660 [wrapper] pandaids: 6898271940 6898271940
[2025-11-28 16:20:43] 2025-11-28 21:20:43,694 [wrapper] cleanup supervisor_pilot 31837 21779
[2025-11-28 16:20:43] 2025-11-28 21:20:43,697 [wrapper] Test setup, not cleaning
[2025-11-28 16:20:43] 2025-11-28 21:20:43,699 [wrapper] apfmon messages muted
[2025-11-28 16:20:43] 2025-11-28 21:20:43,702 [wrapper] ==== wrapper stdout END ====
[2025-11-28 16:20:43] 2025-11-28 21:20:43,705 [wrapper] ==== wrapper stderr END ====
[2025-11-28 16:20:43]  *** Error codes and diagnostics ***
[2025-11-28 16:20:43]     "exeErrorCode": 0,
[2025-11-28 16:20:43]     "exeErrorDiag": "",
[2025-11-28 16:20:43]     "pilotErrorCode": 0,
[2025-11-28 16:20:43]     "pilotErrorDiag": "",
[2025-11-28 16:20:43]  *** Listing of results directory ***
[2025-11-28 16:20:43] total 1707288
[2025-11-28 16:20:43] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-28 16:20:43] -rwx------ 1 boincer umatlas     36292 Nov 26 10:35 runpilot2-wrapper.sh
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 10:35 queuedata.json
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas       100 Nov 27 07:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 16:20:43] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 07:23 run_atlas
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas       105 Nov 27 07:23 job.xml
[2025-11-28 16:20:43] -rw-r--r-- 3 boincer umatlas 407569287 Nov 27 07:23 EVNT.47483658._002547.pool.root.1
[2025-11-28 16:20:43] -rw-r--r-- 3 boincer umatlas 407569287 Nov 27 07:23 ATLAS.root_0
[2025-11-28 16:20:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 07:23 start_atlas.sh
[2025-11-28 16:20:43] drwxrwx--x 2 boincer umatlas      4096 Nov 27 07:23 shared
[2025-11-28 16:20:43] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 07:23 input.tar.gz
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas         0 Nov 27 07:23 boinc_lockfile
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 20:46 pandaJob.out
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas        57 Nov 27 20:46 setup.sh.local
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas    991866 Nov 27 20:46 agis_schedconf.cvmfs.json
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas       534 Nov 28 16:09 boinc_task_state.xml
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas      5955 Nov 28 16:10 init_data.xml
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas 905111349 Nov 28 16:19 HITS.47556161._005295.pool.root.1
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas      1063 Nov 28 16:20 memory_monitor_summary.json
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 16:20 boinc_mmap_file
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas   1516240 Nov 28 16:20 agis_ddmendpoints.agis.ALL.json
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas        30 Nov 28 16:20 wrapper_checkpoint.txt
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas   2312207 Nov 28 16:20 log.47556161._005295.job.log.tgz.1
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas        96 Nov 28 16:20 pilot_heartbeat.json
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas      8658 Nov 28 16:20 heartbeat.json
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas      4738 Nov 28 16:20 pilotlog.txt
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas   9733927 Nov 28 16:20 log.47556161._005295.job.log.1
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas       353 Nov 28 16:20 output.list
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas       620 Nov 28 16:20 runtime_log
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas  12062720 Nov 28 16:20 result.tar.gz
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas      9428 Nov 28 16:20 runtime_log.err
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas       793 Nov 28 16:20 FiHKDmCjWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ5MKDmY6WaPo.diag
[2025-11-28 16:20:43] -rw-r--r-- 1 boincer umatlas     23392 Nov 28 16:20 stderr.txt
[2025-11-28 16:20:43] HITS file was successfully produced:
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas 905111349 Nov 28 16:19 shared/HITS.pool.root.1
[2025-11-28 16:20:43]  *** Contents of shared directory: ***
[2025-11-28 16:20:43] total 1294300
[2025-11-28 16:20:43] -rw-r--r-- 3 boincer umatlas 407569287 Nov 27 07:23 ATLAS.root_0
[2025-11-28 16:20:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 07:23 start_atlas.sh
[2025-11-28 16:20:43] -rw-r--r-- 2 boincer umatlas    590102 Nov 27 07:23 input.tar.gz
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas 905111349 Nov 28 16:19 HITS.pool.root.1
[2025-11-28 16:20:43] -rw------- 1 boincer umatlas  12062720 Nov 28 16:20 result.tar.gz
16:20:45 (10667): run_atlas exited; CPU time 541484.411832
16:20:45 (10667): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN