Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:19:25 (3991217): wrapper (7.7.26015): starting
08:19:25 (3991217): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:19:25] Arguments: --nthreads 8
[2025-11-27 08:19:25] Threads: 8
[2025-11-27 08:19:25] Checking for CVMFS
[2025-11-27 08:19:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:19:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:19:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:19:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:19:29] 2.13.3.0 7385 31478 262652 153364 4 627 31690989 32503808 75873 16776704 0 459650939 99.666 389112051 48670 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 08:19:29] CVMFS is ok
[2025-11-27 08:19:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:19:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:19:29] Further information can be found at the LHC@home message board.
[2025-11-27 08:19:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:19:29] Checking for apptainer binary...
[2025-11-27 08:19:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:19:29] Running /usr/bin/apptainer --version
[2025-11-27 08:19:29] apptainer version 1.4.4-1.el9
[2025-11-27 08:19:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:19:30] c8-7-1.aglt2.org
[2025-11-27 08:19:30] apptainer works
[2025-11-27 08:19:30] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:19:30] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:19:30] Starting ATLAS job with PandaID=6892546248
[2025-11-27 08:19:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:43:22]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:43:22] 2025-11-27 21:42:35,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:43:22] 2025-11-27 21:42:35,311 | INFO     | time since job start (30085s) is within the limit (172800.0s)
[2025-11-27 16:43:22] 2025-11-27 21:42:37,318 | INFO     | time since job start (30087s) is within the limit (172800.0s)
[2025-11-27 16:43:22] 2025-11-27 21:42:37,711 | INFO     | monitor loop #1684: job 0:6892546248 is in state 'finished'
[2025-11-27 16:43:22] 2025-11-27 21:42:37,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:43:22] 2025-11-27 21:42:39,325 | INFO     | time since job start (30089s) is within the limit (172800.0s)
[2025-11-27 16:43:22] 2025-11-27 21:42:40,217 | INFO     | monitor loop #1685: job 0:6892546248 is in state 'finished'
[2025-11-27 16:43:22] 2025-11-27 21:42:40,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:43:22] 2025-11-27 21:42:41,880 | INFO     | PID=4022089 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:43:22] 2025-11-27 21:42:41,880 | INFO     | .. there are 111 such processes running
[2025-11-27 16:43:22] 2025-11-27 21:42:42,728 | INFO     | monitor loop #1686: job 0:6892546248 is in state 'finished'
[2025-11-27 16:43:22] 2025-11-27 21:42:42,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:43:22] 2025-11-27 21:42:42,883 | INFO     | time since job start (30092s) is within the limit (172800.0s)
[2025-11-27 16:43:22] 2025-11-27 21:42:44,890 | INFO     | time since job start (30094s) is within the limit (172800.0s)
[2025-11-27 16:43:22] 2025-11-27 21:42:45,257 | INFO     | monitor loop #1687: job 0:6892546248 is in state 'finished'
[2025-11-27 16:43:22] 2025-11-27 21:42:45,257 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:43:22] 2025-11-27 21:42:46,897 | INFO     | time since job start (30096s) is within the limit (172800.0s)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,566 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:43:22] 2025-11-27 21:42:47,571 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.6306171875
[2025-11-27 16:43:22] 2025-11-27 21:42:47,584 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6892546248/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,585 | INFO     | extracted standard info from prmon json
[2025-11-27 16:43:22] 2025-11-27 21:42:47,585 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:43:22] 2025-11-27 21:42:47,585 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:43:22] 2025-11-27 21:42:47,590 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:43:22] 2025-11-27 21:42:47,590 | INFO     | sum of square deviations: 36706413652.59481
[2025-11-27 16:43:22] 2025-11-27 21:42:47,593 | INFO     | sum of deviations: 220559291235.6929
[2025-11-27 16:43:22] 2025-11-27 21:42:47,593 | INFO     | mean x: 1764264779.2362525
[2025-11-27 16:43:22] 2025-11-27 21:42:47,593 | INFO     | mean y: 2776977.0285132383
[2025-11-27 16:43:22] 2025-11-27 21:42:47,594 | INFO     | intersect: -10598231144.965897
[2025-11-27 16:43:22] 2025-11-27 21:42:47,594 | INFO     | chi2: 20.057705665916796
[2025-11-27 16:43:22] 2025-11-27 21:42:47,594 | INFO     | sum of square deviations: 35596652387.37441
[2025-11-27 16:43:22] 2025-11-27 21:42:47,597 | INFO     | sum of deviations: 387615387917.34546
[2025-11-27 16:43:22] 2025-11-27 21:42:47,597 | INFO     | mean x: 1764264626.7489712
[2025-11-27 16:43:22] 2025-11-27 21:42:47,597 | INFO     | mean y: 2799931.1913580247
[2025-11-27 16:43:22] 2025-11-27 21:42:47,597 | INFO     | intersect: -19208448088.54396
[2025-11-27 16:43:22] 2025-11-27 21:42:47,598 | INFO     | chi2: 16.27587021375561
[2025-11-27 16:43:22] 2025-11-27 21:42:47,598 | INFO     | current chi2=16.27587021375561 (change=18.854775890881168 %)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,598 | INFO     | right removable region: 485
[2025-11-27 16:43:22] 2025-11-27 21:42:47,598 | INFO     | sum of square deviations: 35596282117.37441
[2025-11-27 16:43:22] 2025-11-27 21:42:47,601 | INFO     | sum of deviations: 31177602905.016342
[2025-11-27 16:43:22] 2025-11-27 21:42:47,601 | INFO     | mean x: 1764264931.7489712
[2025-11-27 16:43:22] 2025-11-27 21:42:47,601 | INFO     | mean y: 2802984.5329218106
[2025-11-27 16:43:22] 2025-11-27 21:42:47,601 | INFO     | intersect: -1542458154.8169985
[2025-11-27 16:43:22] 2025-11-27 21:42:47,602 | INFO     | chi2: 15.89062345024521
[2025-11-27 16:43:22] 2025-11-27 21:42:47,602 | INFO     | current chi2=15.89062345024521 (change=20.775467967667566 %)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,602 | INFO     | left removable region: 10
[2025-11-27 16:43:22] 2025-11-27 21:42:47,602 | INFO     | sum of square deviations: 33233679479.317883
[2025-11-27 16:43:22] 2025-11-27 21:42:47,605 | INFO     | sum of deviations: 70566164122.30327
[2025-11-27 16:43:22] 2025-11-27 21:42:47,605 | INFO     | mean x: 1764264901.2778947
[2025-11-27 16:43:22] 2025-11-27 21:42:47,605 | INFO     | mean y: 2856093.5431578946
[2025-11-27 16:43:22] 2025-11-27 21:42:47,605 | INFO     | intersect: -3743265567.6551695
[2025-11-27 16:43:22] 2025-11-27 21:42:47,606 | INFO     | chi2: 7.867817892646723
[2025-11-27 16:43:22] 2025-11-27 21:42:47,606 | INFO     | current memory leak: 2.12 B/s (using 475 data points, chi2=7.87)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,606 | INFO     | could have reported an average CPU frequency of 3794 MHz (20 samples)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,608 | INFO     | ..............................
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . Timing measurements:
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . get job = 0 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . initial setup = 6 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . payload setup = 56 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . stage-in = 0 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . payload execution = 29930 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . stage-out = 5 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | . log creation = 1 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,609 | INFO     | ..............................
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | 
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | job summary report
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | --------------------------------------------------
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | PanDA job id: 6892546248
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | task id: 47493029
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | errors: (none)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | pilot state: finished 
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | transexitcode: 0
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | exeerrorcode: 0
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | exeerrordiag: 
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | exitcode: 0
[2025-11-27 16:43:22] 2025-11-27 21:42:47,905 | INFO     | exitmsg: OK
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | cpuconsumptiontime: 131235 s
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | nevents: 1000
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | neventsw: 0
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | pid: 4045206
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | pgrp: 4045206
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | corecount: 8
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | event service: False
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | sizes: {0: 2284076, 1: 2284331, 2: 2284359, 12: 2284359, 23: 2284387, 34: 2284833, 29992: 2321491, 29999: 2330485, 30001: 2330541, 30032: 2330787}
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | --------------------------------------------------
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | 
[2025-11-27 16:43:22] 2025-11-27 21:42:47,906 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | job 6892546248 has completed (purged errors)
[2025-11-27 16:43:22] 2025-11-27 21:42:47,981 | INFO     | overall cleanup function is called
[2025-11-27 16:43:22] 2025-11-27 21:42:48,999 | INFO     | --- collectZombieJob: --- 10, [4045206]
[2025-11-27 16:43:22] 2025-11-27 21:42:48,999 | INFO     | zombie collector waiting for pid 4045206
[2025-11-27 16:43:22] 2025-11-27 21:42:48,999 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:43:22] 2025-11-27 21:42:48,999 | INFO     | collected zombie processes
[2025-11-27 16:43:22] 2025-11-27 21:42:48,999 | INFO     | will attempt to kill all subprocesses of pid=4045206
[2025-11-27 16:43:22] 2025-11-27 21:42:50,464 | INFO     | process IDs to be killed: [4045206] (in reverse order)
[2025-11-27 16:43:22] 2025-11-27 21:42:50,891 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:43:22] 2025-11-27 21:42:50,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:43:22] 2025-11-27 21:42:51,062 | INFO     | did not find any defunct processes belonging to 4045206
[2025-11-27 16:43:22] 2025-11-27 21:42:51,136 | INFO     | did not find any defunct processes belonging to 4045206
[2025-11-27 16:43:22] 2025-11-27 21:42:51,144 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:43:22] 2025-11-27 21:42:51,144 | INFO     | ready for new job
[2025-11-27 16:43:22] 2025-11-27 21:42:51,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:43:22] 2025-11-27 21:42:51,146 | INFO     | ***************************************
[2025-11-27 16:43:22] 2025-11-27 21:42:51,147 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:43:22] 2025-11-27 21:42:51,147 | INFO     | ***************************************
[2025-11-27 16:43:22] 2025-11-27 21:42:51,147 | INFO     | 
[2025-11-27 16:43:22] 2025-11-27 21:42:51,155 | INFO     | architecture information:
[2025-11-27 16:43:22] 2025-11-27 21:42:51,159 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:43:22] 2025-11-27 21:42:51,214 | INFO     | cat /etc/os-release:
[2025-11-27 16:43:22] NAME="CentOS Linux"
[2025-11-27 16:43:22] VERSION="7 (Core)"
[2025-11-27 16:43:22] ID="centos"
[2025-11-27 16:43:22] ID_LIKE="rhel fedora"
[2025-11-27 16:43:22] VERSION_ID="7"
[2025-11-27 16:43:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:43:22] ANSI_COLOR="0;31"
[2025-11-27 16:43:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:43:22] HOME_URL="https://www.centos.org/"
[2025-11-27 16:43:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:43:22] 
[2025-11-27 16:43:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:43:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:43:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:43:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:43:22] 
[2025-11-27 16:43:22] 2025-11-27 21:42:51,214 | INFO     | ***************************************
[2025-11-27 16:43:22] 2025-11-27 21:42:51,718 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 16:43:22] 2025-11-27 21:42:51,779 | INFO     | sufficient remaining disk space (80547414016 B)
[2025-11-27 16:43:22] 2025-11-27 21:42:51,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:43:22] 2025-11-27 21:42:51,780 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:43:22] 2025-11-27 21:42:51,780 | INFO     | update_server=False
[2025-11-27 16:43:22] 2025-11-27 21:42:51,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:43:22] 2025-11-27 21:42:51,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:43:22] 2025-11-27 21:42:51,780 | INFO     | aborting loop
[2025-11-27 16:43:22] 2025-11-27 21:42:52,241 | INFO     | all payload control threads have been joined
[2025-11-27 16:43:22] 2025-11-27 21:42:52,471 | INFO     | all job control threads have been joined
[2025-11-27 16:43:22] 2025-11-27 21:42:52,502 | INFO     | all data control threads have been joined
[2025-11-27 16:43:22] 2025-11-27 21:42:52,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:43:22] 2025-11-27 21:42:52,753 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:43:22] 2025-11-27 21:42:52,786 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:52,786 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:52,880 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:52,955 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:52,960 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:52,990 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:52,990 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:53,247 | INFO     | [payload] control thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:53,477 | INFO     | [job] control thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:53,508 | INFO     | [data] control thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:53,702 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:53,924 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:53,950 | INFO     | [job] validate thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:54,123 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:54,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:43:22] 2025-11-27 21:42:54,760 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:42:58,609 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:43:22] 2025-11-27 21:43:02,843 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:43:22] 2025-11-27 21:43:04,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140450181019456)>', '<ExcThread(monitor, started 140449817798400)>']
[2025-11-27 16:43:22] 2025-11-27 21:43:09,765 | INFO     | all workflow threads have been joined
[2025-11-27 16:43:22] 2025-11-27 21:43:09,765 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:43:22] 2025-11-27 21:43:09,765 | INFO     | traces error code: 0
[2025-11-27 16:43:22] 2025-11-27 21:43:09,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:43:22] 2025-11-27 21:43:21,018 | INFO     | PID=4022089 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:43:22] 2025-11-27 21:43:21,018 | INFO     | .. there are 111 such processes running
[2025-11-27 16:43:22] 2025-11-27 21:43:21,022 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:43:22] 2025-11-27 21:43:21,022 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:43:22] 2025-11-27 21:43:21,022 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:43:22] 2025-11-27 21:43:21,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:43:22] 2025-11-27 21:43:21,022 | INFO     | [monitor] control thread has ended
[2025-11-27 16:43:22] 2025-11-27 21:43:21,180 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:43:22] 2025-11-27 21:43:21,186 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:43:22] 2025-11-27 21:43:21,223 [wrapper] pilotpid: 4022089
[2025-11-27 16:43:22] 2025-11-27 21:43:21,244 [wrapper] Pilot exit status: 0
[2025-11-27 16:43:22] 2025-11-27 21:43:21,360 [wrapper] pandaids: 6892546248
[2025-11-27 16:43:22] 2025-11-27 21:43:21,659 [wrapper] cleanup supervisor_pilot  238227 4022090
[2025-11-27 16:43:22] 2025-11-27 21:43:21,706 [wrapper] Test setup, not cleaning
[2025-11-27 16:43:22] 2025-11-27 21:43:21,736 [wrapper] apfmon messages muted
[2025-11-27 16:43:22] 2025-11-27 21:43:21,743 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:43:22] 2025-11-27 21:43:21,748 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:43:22]  *** Error codes and diagnostics ***
[2025-11-27 16:43:22]     "exeErrorCode": 0,
[2025-11-27 16:43:22]     "exeErrorDiag": "",
[2025-11-27 16:43:22]     "pilotErrorCode": 0,
[2025-11-27 16:43:22]     "pilotErrorDiag": "",
[2025-11-27 16:43:22]  *** Listing of results directory ***
[2025-11-27 16:43:22] total 1318304
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:16 pilot3.tar.gz
[2025-11-27 16:43:22] -rwx------. 1 boincer umatlas     36292 Nov 19 03:18 runpilot2-wrapper.sh
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:18 queuedata.json
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:43:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:19 run_atlas
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:19 job.xml
[2025-11-27 16:43:22] -rw-r--r--. 2 boincer umatlas 412579540 Nov 27 08:19 EVNT.47493027._000291.pool.root.1
[2025-11-27 16:43:22] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 08:19 start_atlas.sh
[2025-11-27 16:43:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:19 shared
[2025-11-27 16:43:22] -rw-r--r--. 2 boincer umatlas    590098 Nov 27 08:19 input.tar.gz
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:19 boinc_lockfile
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas      2772 Nov 27 08:19 pandaJob.out
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas    991566 Nov 27 08:21 agis_schedconf.cvmfs.json
[2025-11-27 16:43:22] drwx------. 5 boincer umatlas      4096 Nov 27 08:21 pilot3
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas       533 Nov 27 16:23 boinc_task_state.xml
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas      7172 Nov 27 16:37 init_data.xml
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas 922694410 Nov 27 16:41 HITS.47493029._002867.pool.root.1
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas      1052 Nov 27 16:42 memory_monitor_summary.json
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas   1516240 Nov 27 16:42 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas   1725328 Nov 27 16:42 log.47493029._002867.job.log.tgz.1
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas      7909 Nov 27 16:42 heartbeat.json
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:43 boinc_mmap_file
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:43 wrapper_checkpoint.txt
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas        95 Nov 27 16:43 pilot_heartbeat.json
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas       824 Nov 27 16:43 pilotlog.txt
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas   3652082 Nov 27 16:43 log.47493029._002867.job.log.1
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas       353 Nov 27 16:43 output.list
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas       620 Nov 27 16:43 runtime_log
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas   5396480 Nov 27 16:43 result.tar.gz
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas      8694 Nov 27 16:43 runtime_log.err
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas       658 Nov 27 16:43 If4LDm2Zsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo0GKDmQDKBbn.diag
[2025-11-27 16:43:22] -rw-r--r--. 1 boincer umatlas     21880 Nov 27 16:43 stderr.txt
[2025-11-27 16:43:22] HITS file was successfully produced:
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas 922694410 Nov 27 16:41 shared/HITS.pool.root.1
[2025-11-27 16:43:22]  *** Contents of shared directory: ***
[2025-11-27 16:43:22] total 1309860
[2025-11-27 16:43:22] -rw-r--r--. 2 boincer umatlas 412579540 Nov 27 08:19 ATLAS.root_0
[2025-11-27 16:43:22] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 08:19 start_atlas.sh
[2025-11-27 16:43:22] -rw-r--r--. 2 boincer umatlas    590098 Nov 27 08:19 input.tar.gz
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas 922694410 Nov 27 16:41 HITS.pool.root.1
[2025-11-27 16:43:22] -rw-------. 1 boincer umatlas   5396480 Nov 27 16:43 result.tar.gz
16:43:24 (3991217): run_atlas exited; CPU time 131905.352617
16:43:24 (3991217): called boinc_finish(0)

</stderr_txt>
]]>

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