Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:01:33 (3488378): wrapper (7.7.26015): starting
07:01:33 (3488378): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:01:33] Arguments: --nthreads 8
[2025-11-27 07:01:33] Threads: 8
[2025-11-27 07:01:33] Checking for CVMFS
[2025-11-27 07:01:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:01:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:01:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:01:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:01:34] 2.13.3.0 11772 31418 367868 153362 0 643 18299929 32935937 51501 16776704 0 184313036 99.514 236559055 38805 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 07:01:34] CVMFS is ok
[2025-11-27 07:01:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:01:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:01:34] Further information can be found at the LHC@home message board.
[2025-11-27 07:01:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:01:34] Checking for apptainer binary...
[2025-11-27 07:01:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:01:34] Running /usr/bin/apptainer --version
[2025-11-27 07:01:34] apptainer version 1.4.4-1.el9
[2025-11-27 07:01:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:01:34] c7-3-28.aglt2.org
[2025-11-27 07:01:34] apptainer works
[2025-11-27 07:01:34] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:01:34] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:01:34] Starting ATLAS job with PandaID=6897394587
[2025-11-27 07:01:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:41:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:41:23] 2025-11-28 01:40:10,108 | INFO     | time since job start (49100s) is within the limit (172800.0s)
[2025-11-27 20:41:23] 2025-11-28 01:40:10,334 | INFO     | monitor loop #2735: job 0:6897394587 is in state 'finished'
[2025-11-27 20:41:23] 2025-11-28 01:40:10,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:41:23] 2025-11-28 01:40:12,871 | INFO     | monitor loop #2736: job 0:6897394587 is in state 'finished'
[2025-11-27 20:41:23] 2025-11-28 01:40:12,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:41:23] 2025-11-28 01:40:13,687 | INFO     | PID=3492173 has CPU usage=18.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 20:41:23] 2025-11-28 01:40:13,687 | INFO     | .. there are 75 such processes running
[2025-11-27 20:41:23] 2025-11-28 01:40:14,688 | INFO     | time since job start (49104s) is within the limit (172800.0s)
[2025-11-27 20:41:23] 2025-11-28 01:40:15,412 | INFO     | monitor loop #2737: job 0:6897394587 is in state 'finished'
[2025-11-27 20:41:23] 2025-11-28 01:40:15,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:41:23] 2025-11-28 01:40:16,694 | INFO     | time since job start (49106s) is within the limit (172800.0s)
[2025-11-27 20:41:23] 2025-11-28 01:40:17,919 | INFO     | monitor loop #2738: job 0:6897394587 is in state 'finished'
[2025-11-27 20:41:23] 2025-11-28 01:40:17,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:41:23] 2025-11-28 01:40:18,723 | INFO     | time since job start (49108s) is within the limit (172800.0s)
[2025-11-27 20:41:23] 2025-11-28 01:40:20,435 | INFO     | monitor loop #2739: job 0:6897394587 is in state 'finished'
[2025-11-27 20:41:23] 2025-11-28 01:40:20,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:41:23] 2025-11-28 01:40:20,745 | INFO     | time since job start (49110s) is within the limit (172800.0s)
[2025-11-27 20:41:23] 2025-11-28 01:40:21,639 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:41:23] 2025-11-28 01:40:21,645 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3111.0347916666656
[2025-11-27 20:41:23] 2025-11-28 01:40:21,660 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897394587/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:41:23] 2025-11-28 01:40:21,661 | INFO     | extracted standard info from prmon json
[2025-11-27 20:41:23] 2025-11-28 01:40:21,661 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:41:23] 2025-11-28 01:40:21,661 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:41:23] 2025-11-28 01:40:21,672 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:41:23] 2025-11-28 01:40:21,673 | INFO     | sum of square deviations: 161755117381.16022
[2025-11-27 20:41:23] 2025-11-28 01:40:21,686 | INFO     | sum of deviations: 8236678389655.913
[2025-11-27 20:41:23] 2025-11-28 01:40:21,686 | INFO     | mean x: 1764269467.3677018
[2025-11-27 20:41:23] 2025-11-28 01:40:21,686 | INFO     | mean y: 3572146.750310559
[2025-11-27 20:41:23] 2025-11-28 01:40:21,686 | INFO     | intersect: -89834205047.98729
[2025-11-27 20:41:23] 2025-11-28 01:40:21,687 | INFO     | chi2: 16.529812526495128
[2025-11-27 20:41:23] 2025-11-28 01:40:21,688 | INFO     | sum of square deviations: 158759765450.48
[2025-11-27 20:41:23] 2025-11-28 01:40:21,700 | INFO     | sum of deviations: 8607268331643.919
[2025-11-27 20:41:23] 2025-11-28 01:40:21,701 | INFO     | mean x: 1764269314.87
[2025-11-27 20:41:23] 2025-11-28 01:40:21,701 | INFO     | mean y: 3591015.50875
[2025-11-27 20:41:23] 2025-11-28 01:40:21,701 | INFO     | intersect: -95647466160.61377
[2025-11-27 20:41:23] 2025-11-28 01:40:21,702 | INFO     | chi2: 12.53927400616289
[2025-11-27 20:41:23] 2025-11-28 01:40:21,702 | INFO     | current chi2=12.53927400616289 (change=24.141462668956027 %)
[2025-11-27 20:41:23] 2025-11-28 01:40:21,702 | INFO     | right removable region: 799
[2025-11-27 20:41:23] 2025-11-28 01:40:21,702 | INFO     | sum of square deviations: 158759584890.48004
[2025-11-27 20:41:23] 2025-11-28 01:40:21,715 | INFO     | sum of deviations: 7948041948479.905
[2025-11-27 20:41:23] 2025-11-28 01:40:21,715 | INFO     | mean x: 1764269619.87
[2025-11-27 20:41:23] 2025-11-28 01:40:21,715 | INFO     | mean y: 3586820.50875
[2025-11-27 20:41:23] 2025-11-28 01:40:21,716 | INFO     | intersect: -88321719376.46097
[2025-11-27 20:41:23] 2025-11-28 01:40:21,716 | INFO     | chi2: 14.451385477567886
[2025-11-27 20:41:23] 2025-11-28 01:40:21,716 | INFO     | current chi2=14.451385477567886 (change=12.573808962417424 %)
[2025-11-27 20:41:23] 2025-11-28 01:40:21,716 | INFO     | left removable region: 10
[2025-11-27 20:41:23] 2025-11-28 01:40:21,717 | INFO     | sum of square deviations: 152300475325.93393
[2025-11-27 20:41:23] 2025-11-28 01:40:21,729 | INFO     | sum of deviations: 8261126246021.041
[2025-11-27 20:41:23] 2025-11-28 01:40:21,729 | INFO     | mean x: 1764269589.3700888
[2025-11-27 20:41:23] 2025-11-28 01:40:21,729 | INFO     | mean y: 3617096.6539923954
[2025-11-27 20:41:23] 2025-11-28 01:40:21,729 | INFO     | intersect: -95694402089.50267
[2025-11-27 20:41:23] 2025-11-28 01:40:21,730 | INFO     | chi2: 9.5570444224489
[2025-11-27 20:41:23] 2025-11-28 01:40:21,730 | INFO     | current memory leak: 54.24 B/s (using 789 data points, chi2=9.56)
[2025-11-27 20:41:23] 2025-11-28 01:40:21,731 | INFO     | could have reported an average CPU frequency of 3199 MHz (30 samples)
[2025-11-27 20:41:23] 2025-11-28 01:40:21,731 | INFO     | ..............................
[2025-11-27 20:41:23] 2025-11-28 01:40:21,731 | INFO     | . Timing measurements:
[2025-11-27 20:41:23] 2025-11-28 01:40:21,731 | INFO     | . get job = 0 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,731 | INFO     | . initial setup = 2 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,731 | INFO     | . payload setup = 9 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,731 | INFO     | . stage-in = 0 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,732 | INFO     | . payload execution = 49060 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,732 | INFO     | . stage-out = 5 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,732 | INFO     | . log creation = 1 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,732 | INFO     | ..............................
[2025-11-27 20:41:23] 2025-11-28 01:40:21,962 | INFO     | 
[2025-11-27 20:41:23] 2025-11-28 01:40:21,962 | INFO     | job summary report
[2025-11-27 20:41:23] 2025-11-28 01:40:21,962 | INFO     | --------------------------------------------------
[2025-11-27 20:41:23] 2025-11-28 01:40:21,962 | INFO     | PanDA job id: 6897394587
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | task id: 47556161
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | errors: (none)
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | pilot state: finished 
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | transexitcode: 0
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | exeerrorcode: 0
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | exeerrordiag: 
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | exitcode: 0
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | exitmsg: OK
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | cpuconsumptiontime: 188829 s
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | nevents: 1000
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | neventsw: 0
[2025-11-27 20:41:23] 2025-11-28 01:40:21,963 | INFO     | pid: 3501509
[2025-11-27 20:41:23] 2025-11-28 01:40:21,964 | INFO     | pgrp: 3501509
[2025-11-27 20:41:23] 2025-11-28 01:40:21,964 | INFO     | corecount: 8
[2025-11-27 20:41:23] 2025-11-28 01:40:21,964 | INFO     | event service: False
[2025-11-27 20:41:23] 2025-11-28 01:40:21,964 | INFO     | sizes: {0: 2284259, 7: 2284521, 11: 2284549, 49071: 2332373, 49077: 2341367, 49080: 2341423, 49094: 2341797}
[2025-11-27 20:41:23] 2025-11-28 01:40:21,964 | INFO     | --------------------------------------------------
[2025-11-27 20:41:23] 2025-11-28 01:40:21,964 | INFO     | 
[2025-11-27 20:41:23] 2025-11-28 01:40:21,964 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | job 6897394587 has completed (purged errors)
[2025-11-27 20:41:23] 2025-11-28 01:40:22,075 | INFO     | overall cleanup function is called
[2025-11-27 20:41:23] 2025-11-28 01:40:23,126 | INFO     | --- collectZombieJob: --- 10, [3501509]
[2025-11-27 20:41:23] 2025-11-28 01:40:23,126 | INFO     | zombie collector waiting for pid 3501509
[2025-11-27 20:41:23] 2025-11-28 01:40:23,126 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:41:23] 2025-11-28 01:40:23,126 | INFO     | collected zombie processes
[2025-11-27 20:41:23] 2025-11-28 01:40:23,126 | INFO     | will attempt to kill all subprocesses of pid=3501509
[2025-11-27 20:41:23] 2025-11-28 01:40:25,256 | INFO     | process IDs to be killed: [3501509] (in reverse order)
[2025-11-27 20:41:23] 2025-11-28 01:40:25,655 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:41:23] 2025-11-28 01:40:25,656 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:41:23] 2025-11-28 01:40:25,721 | INFO     | did not find any defunct processes belonging to 3501509
[2025-11-27 20:41:23] 2025-11-28 01:40:25,791 | INFO     | did not find any defunct processes belonging to 3501509
[2025-11-27 20:41:23] 2025-11-28 01:40:25,795 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:41:23] 2025-11-28 01:40:25,796 | INFO     | ready for new job
[2025-11-27 20:41:23] 2025-11-28 01:40:25,796 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:41:23] 2025-11-28 01:40:25,799 | INFO     | ***************************************
[2025-11-27 20:41:23] 2025-11-28 01:40:25,800 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:41:23] 2025-11-28 01:40:25,800 | INFO     | ***************************************
[2025-11-27 20:41:23] 2025-11-28 01:40:25,800 | INFO     | 
[2025-11-27 20:41:23] 2025-11-28 01:40:25,805 | INFO     | architecture information:
[2025-11-27 20:41:23] 2025-11-28 01:40:25,809 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:41:23] 2025-11-28 01:40:25,861 | INFO     | cat /etc/os-release:
[2025-11-27 20:41:23] NAME="CentOS Linux"
[2025-11-27 20:41:23] VERSION="7 (Core)"
[2025-11-27 20:41:23] ID="centos"
[2025-11-27 20:41:23] ID_LIKE="rhel fedora"
[2025-11-27 20:41:23] VERSION_ID="7"
[2025-11-27 20:41:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:41:23] ANSI_COLOR="0;31"
[2025-11-27 20:41:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:41:23] HOME_URL="https://www.centos.org/"
[2025-11-27 20:41:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:41:23] 
[2025-11-27 20:41:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:41:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:41:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:41:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:41:23] 
[2025-11-27 20:41:23] 2025-11-28 01:40:25,861 | INFO     | ***************************************
[2025-11-27 20:41:23] 2025-11-28 01:40:26,369 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 20:41:23] 2025-11-28 01:40:26,493 | INFO     | sufficient remaining disk space (66439872512 B)
[2025-11-27 20:41:23] 2025-11-28 01:40:26,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:41:23] 2025-11-28 01:40:26,495 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:41:23] 2025-11-28 01:40:26,495 | INFO     | update_server=False
[2025-11-27 20:41:23] 2025-11-28 01:40:26,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:41:23] 2025-11-28 01:40:26,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:41:23] 2025-11-28 01:40:26,495 | INFO     | aborting loop
[2025-11-27 20:41:23] 2025-11-28 01:40:27,034 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:41:23] 2025-11-28 01:40:27,242 | INFO     | all data control threads have been joined
[2025-11-27 20:41:23] 2025-11-28 01:40:27,335 | INFO     | all payload control threads have been joined
[2025-11-27 20:41:23] 2025-11-28 01:40:27,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:41:23] 2025-11-28 01:40:27,458 | INFO     | all job control threads have been joined
[2025-11-27 20:41:23] 2025-11-28 01:40:27,501 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:27,501 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:27,602 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:27,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:27,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:41:23] 2025-11-28 01:40:27,752 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:27,921 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,011 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,039 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,053 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,248 | INFO     | [data] control thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,360 | INFO     | [payload] control thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,464 | INFO     | [job] control thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,648 | INFO     | [job] validate thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:28,736 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:29,773 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:31,364 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:41:23] 2025-11-28 01:40:55,940 | INFO     | PID=3492173 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:41:23] 2025-11-28 01:40:55,941 | INFO     | .. there are 75 such processes running
[2025-11-27 20:41:23] 2025-11-28 01:40:55,941 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:41:23] 2025-11-28 01:40:55,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:41:23] 2025-11-28 01:40:55,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:41:23] 2025-11-28 01:41:17,312 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:41:23] 2025-11-28 01:41:17,669 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140677942056768)>', '<ExcThread(monitor, started 140677014873856)>']
[2025-11-27 20:41:23] 2025-11-28 01:41:18,101 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:41:23] 2025-11-28 01:41:18,101 | INFO     | [monitor] control thread has ended
[2025-11-27 20:41:23] 2025-11-28 01:41:22,695 | INFO     | all workflow threads have been joined
[2025-11-27 20:41:23] 2025-11-28 01:41:22,695 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:41:23] 2025-11-28 01:41:22,700 | INFO     | traces error code: 0
[2025-11-27 20:41:23] 2025-11-28 01:41:22,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:41:23] 2025-11-28 01:41:23,089 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:41:23] 2025-11-28 01:41:23,093 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:41:23] 2025-11-28 01:41:23,095 [wrapper] pilotpid: 3492173
[2025-11-27 20:41:23] 2025-11-28 01:41:23,097 [wrapper] Pilot exit status: 0
[2025-11-27 20:41:23] 2025-11-28 01:41:23,148 [wrapper] pandaids: 6897394587
[2025-11-27 20:41:23] 2025-11-28 01:41:23,397 [wrapper] cleanup supervisor_pilot 3084591 3492174
[2025-11-27 20:41:23] 2025-11-28 01:41:23,413 [wrapper] Test setup, not cleaning
[2025-11-27 20:41:23] 2025-11-28 01:41:23,435 [wrapper] apfmon messages muted
[2025-11-27 20:41:23] 2025-11-28 01:41:23,443 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:41:23] 2025-11-28 01:41:23,449 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:41:23]  *** Error codes and diagnostics ***
[2025-11-27 20:41:24]     "exeErrorCode": 0,
[2025-11-27 20:41:24]     "exeErrorDiag": "",
[2025-11-27 20:41:24]     "pilotErrorCode": 0,
[2025-11-27 20:41:24]     "pilotErrorDiag": "",
[2025-11-27 20:41:24]  *** Listing of results directory ***
[2025-11-27 20:41:24] total 1314196
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 20:41:24] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas       100 Nov 27 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:41:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 07:01 run_atlas
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas       105 Nov 27 07:01 job.xml
[2025-11-27 20:41:24] -rw-r--r--. 2 boincer umatlas 408833946 Nov 27 07:01 EVNT.47483658._002228.pool.root.1
[2025-11-27 20:41:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 07:01 start_atlas.sh
[2025-11-27 20:41:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 07:01 shared
[2025-11-27 20:41:24] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 07:01 input.tar.gz
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas         0 Nov 27 07:01 boinc_lockfile
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 07:01 pandaJob.out
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas        57 Nov 27 07:01 setup.sh.local
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas    991572 Nov 27 07:01 agis_schedconf.cvmfs.json
[2025-11-27 20:41:24] drwx------. 5 boincer umatlas      4096 Nov 27 07:01 pilot3
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:25 boinc_task_state.xml
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas 917145410 Nov 27 20:39 HITS.47556161._002111.pool.root.1
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas      1073 Nov 27 20:39 memory_monitor_summary.json
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:40 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas   1972236 Nov 27 20:40 log.47556161._002111.job.log.tgz.1
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas      8642 Nov 27 20:40 heartbeat.json
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 20:40 init_data.xml
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas        95 Nov 27 20:40 pilot_heartbeat.json
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:41 wrapper_checkpoint.txt
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:41 boinc_mmap_file
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas      4824 Nov 27 20:41 pilotlog.txt
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas   5945625 Nov 27 20:41 log.47556161._002111.job.log.1
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas       353 Nov 27 20:41 output.list
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:41 runtime_log
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas   7936000 Nov 27 20:41 result.tar.gz
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 20:41 runtime_log.err
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas       664 Nov 27 20:41 bfXMDmgVBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9UJKDmJCrcom.diag
[2025-11-27 20:41:24] -rw-r--r--. 1 boincer umatlas     21817 Nov 27 20:41 stderr.txt
[2025-11-27 20:41:24] HITS file was successfully produced:
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas 917145410 Nov 27 20:39 shared/HITS.pool.root.1
[2025-11-27 20:41:24]  *** Contents of shared directory: ***
[2025-11-27 20:41:24] total 1303260
[2025-11-27 20:41:24] -rw-r--r--. 2 boincer umatlas 408833946 Nov 27 07:01 ATLAS.root_0
[2025-11-27 20:41:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 07:01 start_atlas.sh
[2025-11-27 20:41:24] -rw-r--r--. 2 boincer umatlas    590107 Nov 27 07:01 input.tar.gz
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas 917145410 Nov 27 20:39 HITS.pool.root.1
[2025-11-27 20:41:24] -rw-------. 1 boincer umatlas   7936000 Nov 27 20:41 result.tar.gz
20:41:25 (3488378): run_atlas exited; CPU time 190149.915908
20:41:25 (3488378): called boinc_finish(0)

</stderr_txt>
]]>

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