Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:45:58 (26403): wrapper (7.7.26015): starting
06:45:58 (26403): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 06:45:58] Arguments: --nthreads 12
[2025-11-27 06:45:58] Threads: 12
[2025-11-27 06:45:58] Checking for CVMFS
[2025-11-27 06:45:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:45:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:45:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:45:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:45:59] 2.11.2.0 3165 74700 92984 153362 2 82 10517136 20275200 1 130560 0 31427068 99.917 4033902 37017 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 06:45:59] CVMFS is ok
[2025-11-27 06:45:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:45:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:45:59] Further information can be found at the LHC@home message board.
[2025-11-27 06:45:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:45:59] Checking for apptainer binary...
[2025-11-27 06:45:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:45:59] Running /usr/bin/apptainer --version
[2025-11-27 06:45:59] apptainer version 1.3.2-1.el7
[2025-11-27 06:45:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:46:00] c-115-40.aglt2.org
[2025-11-27 06:46:00] apptainer works
[2025-11-27 06:46:00] Set ATHENA_PROC_NUMBER=12
[2025-11-27 06:46:00] Set ATHENA_CORE_NUMBER=12
[2025-11-27 06:46:00] Starting ATLAS job with PandaID=6898271554
[2025-11-27 06:46:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:17:58]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:17:58] 2025-11-27 18:17:07,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,057 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 13:17:58] 2025-11-27 18:17:08,060 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-27 13:17:58] 2025-11-27 18:17:08,063 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898271554/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,064 | INFO     | extracted standard info from prmon json
[2025-11-27 13:17:58] 2025-11-27 18:17:08,064 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:17:58] 2025-11-27 18:17:08,064 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:17:58] 2025-11-27 18:17:08,071 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:17:58] 2025-11-27 18:17:08,071 | INFO     | sum of square deviations: 17557662557.226562
[2025-11-27 13:17:58] 2025-11-27 18:17:08,075 | INFO     | sum of deviations: 291874173735.406
[2025-11-27 13:17:58] 2025-11-27 18:17:08,075 | INFO     | mean x: 1764255684.6328125
[2025-11-27 13:17:58] 2025-11-27 18:17:08,075 | INFO     | mean y: 3772753.6979166665
[2025-11-27 13:17:58] 2025-11-27 18:17:08,075 | INFO     | intersect: -29324770754.40423
[2025-11-27 13:17:58] 2025-11-27 18:17:08,075 | INFO     | chi2: 5.504103045932962
[2025-11-27 13:17:58] 2025-11-27 18:17:08,076 | INFO     | sum of square deviations: 16880716582.137196
[2025-11-27 13:17:58] 2025-11-27 18:17:08,079 | INFO     | sum of deviations: 440515170226.6493
[2025-11-27 13:17:58] 2025-11-27 18:17:08,079 | INFO     | mean x: 1764255532.1345646
[2025-11-27 13:17:58] 2025-11-27 18:17:08,079 | INFO     | mean y: 3806202.751978892
[2025-11-27 13:17:58] 2025-11-27 18:17:08,079 | INFO     | intersect: -46035787097.68657
[2025-11-27 13:17:58] 2025-11-27 18:17:08,079 | INFO     | chi2: 2.9564202165502924
[2025-11-27 13:17:58] 2025-11-27 18:17:08,080 | INFO     | current chi2=2.9564202165502924 (change=46.28697551847578 %)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,080 | INFO     | sum of square deviations: 16221398844.545507
[2025-11-27 13:17:58] 2025-11-27 18:17:08,083 | INFO     | sum of deviations: 502246656050.27264
[2025-11-27 13:17:58] 2025-11-27 18:17:08,083 | INFO     | mean x: 1764255379.6363637
[2025-11-27 13:17:58] 2025-11-27 18:17:08,083 | INFO     | mean y: 3820429.053475936
[2025-11-27 13:17:58] 2025-11-27 18:17:08,083 | INFO     | intersect: -54621022553.52437
[2025-11-27 13:17:58] 2025-11-27 18:17:08,084 | INFO     | chi2: 2.318626581253353
[2025-11-27 13:17:58] 2025-11-27 18:17:08,084 | INFO     | current chi2=2.318626581253353 (change=21.573172572914913 %)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,084 | INFO     | right removable region: 373
[2025-11-27 13:17:58] 2025-11-27 18:17:08,084 | INFO     | sum of square deviations: 16880685472.137207
[2025-11-27 13:17:58] 2025-11-27 18:17:08,087 | INFO     | sum of deviations: 161503226162.3668
[2025-11-27 13:17:58] 2025-11-27 18:17:08,087 | INFO     | mean x: 1764255837.1345646
[2025-11-27 13:17:58] 2025-11-27 18:17:08,087 | INFO     | mean y: 3802007.0712401057
[2025-11-27 13:17:58] 2025-11-27 18:17:08,087 | INFO     | intersect: -16875430174.78073
[2025-11-27 13:17:58] 2025-11-27 18:17:08,088 | INFO     | chi2: 3.316029799115867
[2025-11-27 13:17:58] 2025-11-27 18:17:08,088 | INFO     | current chi2=3.316029799115867 (change=39.75349350397581 %)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,088 | INFO     | sum of square deviations: 16221336624.545502
[2025-11-27 13:17:58] 2025-11-27 18:17:08,091 | INFO     | sum of deviations: 130997639103.45435
[2025-11-27 13:17:58] 2025-11-27 18:17:08,091 | INFO     | mean x: 1764255989.6363637
[2025-11-27 13:17:58] 2025-11-27 18:17:08,091 | INFO     | mean y: 3809050.334224599
[2025-11-27 13:17:58] 2025-11-27 18:17:08,091 | INFO     | intersect: -14243683296.676207
[2025-11-27 13:17:58] 2025-11-27 18:17:08,092 | INFO     | chi2: 3.26085060964253
[2025-11-27 13:17:58] 2025-11-27 18:17:08,092 | INFO     | current chi2=3.26085060964253 (change=1.6640136794925493 %)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,092 | INFO     | left removable region: 20
[2025-11-27 13:17:58] 2025-11-27 18:17:08,092 | INFO     | sum of square deviations: 13639458521.473068
[2025-11-27 13:17:58] 2025-11-27 18:17:08,095 | INFO     | sum of deviations: 305524441243.09045
[2025-11-27 13:17:58] 2025-11-27 18:17:08,095 | INFO     | mean x: 1764255959.1359773
[2025-11-27 13:17:58] 2025-11-27 18:17:08,095 | INFO     | mean y: 3866808.3314447594
[2025-11-27 13:17:58] 2025-11-27 18:17:08,095 | INFO     | intersect: -39515540452.31671
[2025-11-27 13:17:58] 2025-11-27 18:17:08,096 | INFO     | chi2: 0.03967101410040605
[2025-11-27 13:17:58] 2025-11-27 18:17:08,096 | INFO     | current memory leak: 22.40 B/s (using 353 data points, chi2=0.04)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,096 | INFO     | could have reported an average CPU frequency of 2564 MHz (16 samples)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,096 | INFO     | ..............................
[2025-11-27 13:17:58] 2025-11-27 18:17:08,096 | INFO     | . Timing measurements:
[2025-11-27 13:17:58] 2025-11-27 18:17:08,096 | INFO     | . get job = 0 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,097 | INFO     | . initial setup = 2 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,097 | INFO     | . payload setup = 7 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,097 | INFO     | . stage-in = 0 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,097 | INFO     | . payload execution = 23415 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,097 | INFO     | . stage-out = 3 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,097 | INFO     | . log creation = 0 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,097 | INFO     | ..............................
[2025-11-27 13:17:58] 2025-11-27 18:17:08,171 | INFO     | 
[2025-11-27 13:17:58] 2025-11-27 18:17:08,171 | INFO     | job summary report
[2025-11-27 13:17:58] 2025-11-27 18:17:08,171 | INFO     | --------------------------------------------------
[2025-11-27 13:17:58] 2025-11-27 18:17:08,171 | INFO     | PanDA job id: 6898271554
[2025-11-27 13:17:58] 2025-11-27 18:17:08,171 | INFO     | task id: 47556161
[2025-11-27 13:17:58] 2025-11-27 18:17:08,172 | INFO     | errors: (none)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,172 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:17:58] 2025-11-27 18:17:08,172 | INFO     | pilot state: finished 
[2025-11-27 13:17:58] 2025-11-27 18:17:08,172 | INFO     | transexitcode: 0
[2025-11-27 13:17:58] 2025-11-27 18:17:08,172 | INFO     | exeerrorcode: 0
[2025-11-27 13:17:58] 2025-11-27 18:17:08,172 | INFO     | exeerrordiag: 
[2025-11-27 13:17:58] 2025-11-27 18:17:08,173 | INFO     | exitcode: 0
[2025-11-27 13:17:58] 2025-11-27 18:17:08,173 | INFO     | exitmsg: OK
[2025-11-27 13:17:58] 2025-11-27 18:17:08,173 | INFO     | cpuconsumptiontime: 267586 s
[2025-11-27 13:17:58] 2025-11-27 18:17:08,173 | INFO     | nevents: 1000
[2025-11-27 13:17:58] 2025-11-27 18:17:08,173 | INFO     | neventsw: 0
[2025-11-27 13:17:58] 2025-11-27 18:17:08,173 | INFO     | pid: 4964
[2025-11-27 13:17:58] 2025-11-27 18:17:08,173 | INFO     | pgrp: 4964
[2025-11-27 13:17:58] 2025-11-27 18:17:08,174 | INFO     | corecount: 12
[2025-11-27 13:17:58] 2025-11-27 18:17:08,174 | INFO     | event service: False
[2025-11-27 13:17:58] 2025-11-27 18:17:08,174 | INFO     | sizes: {0: 2284088, 1: 2284343, 5: 2284605, 12: 2284661, 23426: 2320622, 23427: 2320621, 23431: 2329799, 23432: 2329855, 23438: 2330101}
[2025-11-27 13:17:58] 2025-11-27 18:17:08,174 | INFO     | --------------------------------------------------
[2025-11-27 13:17:58] 2025-11-27 18:17:08,174 | INFO     | 
[2025-11-27 13:17:58] 2025-11-27 18:17:08,174 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 13:17:58] 2025-11-27 18:17:08,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,201 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,201 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,201 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,201 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,201 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,201 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,202 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,202 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,202 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,202 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,202 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,202 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,202 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,203 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:17:58] 2025-11-27 18:17:08,203 | INFO     | job 6898271554 has completed (purged errors)
[2025-11-27 13:17:58] 2025-11-27 18:17:08,203 | INFO     | overall cleanup function is called
[2025-11-27 13:17:58] 2025-11-27 18:17:09,217 | INFO     | --- collectZombieJob: --- 10, [4964]
[2025-11-27 13:17:58] 2025-11-27 18:17:09,217 | INFO     | zombie collector waiting for pid 4964
[2025-11-27 13:17:58] 2025-11-27 18:17:09,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:17:58] 2025-11-27 18:17:09,218 | INFO     | collected zombie processes
[2025-11-27 13:17:58] 2025-11-27 18:17:09,218 | INFO     | will attempt to kill all subprocesses of pid=4964
[2025-11-27 13:17:58] 2025-11-27 18:17:09,306 | INFO     | process IDs to be killed: [4964] (in reverse order)
[2025-11-27 13:17:58] 2025-11-27 18:17:09,358 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:17:58] 2025-11-27 18:17:09,359 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:17:58] 2025-11-27 18:17:09,362 | INFO     | did not find any defunct processes belonging to 4964
[2025-11-27 13:17:58] 2025-11-27 18:17:09,365 | INFO     | did not find any defunct processes belonging to 4964
[2025-11-27 13:17:58] 2025-11-27 18:17:09,366 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:17:58] 2025-11-27 18:17:09,366 | INFO     | ready for new job
[2025-11-27 13:17:58] 2025-11-27 18:17:09,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:17:58] 2025-11-27 18:17:09,368 | INFO     | ***************************************
[2025-11-27 13:17:58] 2025-11-27 18:17:09,368 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:17:58] 2025-11-27 18:17:09,369 | INFO     | ***************************************
[2025-11-27 13:17:58] 2025-11-27 18:17:09,369 | INFO     | 
[2025-11-27 13:17:58] 2025-11-27 18:17:09,369 | INFO     | architecture information:
[2025-11-27 13:17:58] 2025-11-27 18:17:09,370 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:17:58] 2025-11-27 18:17:09,386 | INFO     | cat /etc/os-release:
[2025-11-27 13:17:58] NAME="CentOS Linux"
[2025-11-27 13:17:58] VERSION="7 (Core)"
[2025-11-27 13:17:58] ID="centos"
[2025-11-27 13:17:58] ID_LIKE="rhel fedora"
[2025-11-27 13:17:58] VERSION_ID="7"
[2025-11-27 13:17:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:17:58] ANSI_COLOR="0;31"
[2025-11-27 13:17:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:17:58] HOME_URL="https://www.centos.org/"
[2025-11-27 13:17:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:17:58] 
[2025-11-27 13:17:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:17:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:17:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:17:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:17:58] 
[2025-11-27 13:17:58] 2025-11-27 18:17:09,386 | INFO     | ***************************************
[2025-11-27 13:17:58] 2025-11-27 18:17:09,889 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 13:17:58] 2025-11-27 18:17:09,907 | INFO     | sufficient remaining disk space (17597202432 B)
[2025-11-27 13:17:58] 2025-11-27 18:17:09,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:17:58] 2025-11-27 18:17:09,908 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:17:58] 2025-11-27 18:17:09,908 | INFO     | update_server=False
[2025-11-27 13:17:58] 2025-11-27 18:17:09,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:17:58] 2025-11-27 18:17:09,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:17:58] 2025-11-27 18:17:09,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:17:58] 2025-11-27 18:17:10,316 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 13:17:58] 2025-11-27 18:17:10,316 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 13:17:58] 2025-11-27 18:17:10,316 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:17:58] 2025-11-27 18:17:10,316 | INFO     | will abort loop
[2025-11-27 13:17:58] 2025-11-27 18:17:10,764 | INFO     | all data control threads have been joined
[2025-11-27 13:17:58] 2025-11-27 18:17:10,914 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:10,914 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,013 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,156 | INFO     | all payload control threads have been joined
[2025-11-27 13:17:58] 2025-11-27 18:17:11,291 | INFO     | [job] validate thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,322 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,458 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,486 | INFO     | all job control threads have been joined
[2025-11-27 13:17:58] 2025-11-27 18:17:11,770 | INFO     | [data] control thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,794 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,915 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:11,946 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:12,115 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:12,161 | INFO     | [payload] control thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:12,384 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:12,491 | INFO     | [job] control thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:12,933 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:17:58] 2025-11-27 18:17:16,936 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:20,109 | INFO     | job.realtimelogging is not enabled
[2025-11-27 13:17:58] 2025-11-27 18:17:21,138 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:17:58] 2025-11-27 18:17:40,714 | INFO     | PID=30851 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 13:17:58] 2025-11-27 18:17:40,714 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:17:58] 2025-11-27 18:17:40,714 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:17:58] 2025-11-27 18:17:40,714 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:17:58] 2025-11-27 18:17:52,362 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:17:58] 2025-11-27 18:17:53,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139783615141696)>', '<ExcThread(monitor, started 139782562756352)>']
[2025-11-27 13:17:58] 2025-11-27 18:17:53,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:17:58] 2025-11-27 18:17:53,766 | INFO     | [monitor] control thread has ended
[2025-11-27 13:17:58] 2025-11-27 18:17:58,399 | INFO     | all workflow threads have been joined
[2025-11-27 13:17:58] 2025-11-27 18:17:58,399 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:17:58] 2025-11-27 18:17:58,400 | INFO     | traces error code: 0
[2025-11-27 13:17:58] 2025-11-27 18:17:58,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:17:58] 2025-11-27 18:17:58,479 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:17:58] 2025-11-27 18:17:58,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:17:58] 2025-11-27 18:17:58,486 [wrapper] pilotpid: 30851
[2025-11-27 13:17:58] 2025-11-27 18:17:58,490 [wrapper] Pilot exit status: 0
[2025-11-27 13:17:58] 2025-11-27 18:17:58,504 [wrapper] pandaids: 6898271554
[2025-11-27 13:17:58] 2025-11-27 18:17:58,550 [wrapper] cleanup supervisor_pilot 13669 30852
[2025-11-27 13:17:58] 2025-11-27 18:17:58,553 [wrapper] Test setup, not cleaning
[2025-11-27 13:17:58] 2025-11-27 18:17:58,557 [wrapper] apfmon messages muted
[2025-11-27 13:17:58] 2025-11-27 18:17:58,562 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:17:58] 2025-11-27 18:17:58,565 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:17:58]  *** Error codes and diagnostics ***
[2025-11-27 13:17:58]     "exeErrorCode": 0,
[2025-11-27 13:17:58]     "exeErrorDiag": "",
[2025-11-27 13:17:58]     "pilotErrorCode": 0,
[2025-11-27 13:17:58]     "pilotErrorDiag": "",
[2025-11-27 13:17:58]  *** Listing of results directory ***
[2025-11-27 13:17:58] total 1304488
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-27 13:17:58] -rwx------ 1 boincer umatlas     36292 Nov 26 10:17 runpilot2-wrapper.sh
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 10:17 queuedata.json
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas       100 Nov 27 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:17:58] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 06:45 run_atlas
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas       105 Nov 27 06:45 job.xml
[2025-11-27 13:17:58] -rw-r--r-- 2 boincer umatlas 408660226 Nov 27 06:45 EVNT.47483658._002539.pool.root.1
[2025-11-27 13:17:58] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:45 start_atlas.sh
[2025-11-27 13:17:58] drwxrwx--x 2 boincer umatlas      4096 Nov 27 06:45 shared
[2025-11-27 13:17:58] -rw-r--r-- 2 boincer umatlas    590101 Nov 27 06:45 input.tar.gz
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas         0 Nov 27 06:45 boinc_lockfile
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 06:46 pandaJob.out
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas        57 Nov 27 06:46 setup.sh.local
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas    991572 Nov 27 06:46 agis_schedconf.cvmfs.json
[2025-11-27 13:17:58] drwx------ 5 boincer umatlas      4096 Nov 27 06:46 pilot3
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas       532 Nov 27 13:06 boinc_task_state.xml
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas      5957 Nov 27 13:12 init_data.xml
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas 912332528 Nov 27 13:16 HITS.47556161._005219.pool.root.1
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas        95 Nov 27 13:16 pilot_heartbeat.json
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas      1060 Nov 27 13:16 memory_monitor_summary.json
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas   1516240 Nov 27 13:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas   2155582 Nov 27 13:17 log.47556161._005219.job.log.tgz.1
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas      8665 Nov 27 13:17 heartbeat.json
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 13:17 boinc_mmap_file
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas        29 Nov 27 13:17 wrapper_checkpoint.txt
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas      5004 Nov 27 13:17 pilotlog.txt
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas   3282382 Nov 27 13:17 log.47556161._005219.job.log.1
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas       353 Nov 27 13:17 output.list
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas       620 Nov 27 13:17 runtime_log
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas   5457920 Nov 27 13:17 result.tar.gz
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas      9345 Nov 27 13:17 runtime_log.err
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas       670 Nov 27 13:17 eKXKDmASWi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0yJKDmYjl0Dn.diag
[2025-11-27 13:17:58] -rw-r--r-- 1 boincer umatlas     21303 Nov 27 13:17 stderr.txt
[2025-11-27 13:17:58] HITS file was successfully produced:
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas 912332528 Nov 27 13:16 shared/HITS.pool.root.1
[2025-11-27 13:17:58]  *** Contents of shared directory: ***
[2025-11-27 13:17:58] total 1295972
[2025-11-27 13:17:58] -rw-r--r-- 2 boincer umatlas 408660226 Nov 27 06:45 ATLAS.root_0
[2025-11-27 13:17:58] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:45 start_atlas.sh
[2025-11-27 13:17:58] -rw-r--r-- 2 boincer umatlas    590101 Nov 27 06:45 input.tar.gz
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas 912332528 Nov 27 13:16 HITS.pool.root.1
[2025-11-27 13:17:58] -rw------- 1 boincer umatlas   5457920 Nov 27 13:17 result.tar.gz
13:18:00 (26403): run_atlas exited; CPU time 261589.751137
13:18:00 (26403): called boinc_finish(0)

</stderr_txt>
]]>

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