Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:28:14 (21988): wrapper (7.7.26015): starting
06:28:14 (21988): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:28:15] Arguments: --nthreads 8
[2025-11-27 06:28:15] Threads: 8
[2025-11-27 06:28:15] Checking for CVMFS
[2025-11-27 06:28:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:28:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:28:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:28:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:28:15] 2.11.2.0 13817 546739 297292 153362 0 90 13764478 18432000 1937 130560 8 261999765 99.609 266463052 24621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 06:28:15] CVMFS is ok
[2025-11-27 06:28:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:28:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:28:15] Further information can be found at the LHC@home message board.
[2025-11-27 06:28:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:28:15] Checking for apptainer binary...
[2025-11-27 06:28:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:28:15] Running /usr/bin/apptainer --version
[2025-11-27 06:28:15] apptainer version 1.3.2-1.el7
[2025-11-27 06:28:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:28:16] c-9-29.aglt2.org
[2025-11-27 06:28:16] apptainer works
[2025-11-27 06:28:16] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:28:16] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:28:16] Starting ATLAS job with PandaID=6897139623
[2025-11-27 06:28:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:10:21 (45591): wrapper (7.7.26015): starting
09:10:21 (45591): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:10:21] Arguments: --nthreads 8
[2025-11-27 09:10:21] Threads: 8
[2025-11-27 09:10:21] This job has been restarted, cleaning up previous attempt
[2025-11-27 09:10:21] Checking for CVMFS
[2025-11-27 09:10:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:10:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:10:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:10:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:10:21] 2.11.2.0 13817 546901 297656 153366 2 56 13795287 18432001 1 130560 8 262262553 99.610 266466954 24621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 09:10:21] CVMFS is ok
[2025-11-27 09:10:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:10:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:10:21] Further information can be found at the LHC@home message board.
[2025-11-27 09:10:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:10:21] Checking for apptainer binary...
[2025-11-27 09:10:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:10:21] Running /usr/bin/apptainer --version
[2025-11-27 09:10:21] apptainer version 1.3.2-1.el7
[2025-11-27 09:10:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:10:22] c-9-29.aglt2.org
[2025-11-27 09:10:22] apptainer works
[2025-11-27 09:10:22] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:10:22] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:10:22] Starting ATLAS job with PandaID=6897139623
[2025-11-27 09:10:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:29:20]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:29:20] 2025-11-28 07:28:20,811 | INFO     | monitor loop #4358: job 0:6897139623 is in state 'finished'
[2025-11-28 02:29:20] 2025-11-28 07:28:20,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:29:20] 2025-11-28 07:28:21,056 | INFO     | time since job start (62271s) is within the limit (172800.0s)
[2025-11-28 02:29:20] 2025-11-28 07:28:22,894 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 02:29:20] 2025-11-28 07:28:22,903 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 3013.4700937500006
[2025-11-28 02:29:20] 2025-11-28 07:28:22,908 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897139623/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:29:20] 2025-11-28 07:28:22,908 | INFO     | extracted standard info from prmon json
[2025-11-28 02:29:20] 2025-11-28 07:28:22,909 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:29:20] 2025-11-28 07:28:22,909 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:29:20] 2025-11-28 07:28:22,921 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:29:20] 2025-11-28 07:28:22,922 | INFO     | sum of square deviations: 330030684627.72534
[2025-11-28 02:29:20] 2025-11-28 07:28:22,950 | INFO     | sum of deviations: 1925836818728.996
[2025-11-28 02:29:20] 2025-11-28 07:28:22,950 | INFO     | mean x: 1764283763.789422
[2025-11-28 02:29:20] 2025-11-28 07:28:22,951 | INFO     | mean y: 2860639.9069539667
[2025-11-28 02:29:20] 2025-11-28 07:28:22,951 | INFO     | intersect: -10292311261.530247
[2025-11-28 02:29:20] 2025-11-28 07:28:22,952 | INFO     | chi2: 5.060195686400682
[2025-11-28 02:29:20] 2025-11-28 07:28:22,954 | INFO     | sum of square deviations: 325205984174.59467
[2025-11-28 02:29:20] 2025-11-28 07:28:22,975 | INFO     | sum of deviations: 2221519557252.9443
[2025-11-28 02:29:20] 2025-11-28 07:28:22,975 | INFO     | mean x: 1764283611.293307
[2025-11-28 02:29:20] 2025-11-28 07:28:22,975 | INFO     | mean y: 2869977.933070866
[2025-11-28 02:29:20] 2025-11-28 07:28:22,975 | INFO     | intersect: -12049154701.0615
[2025-11-28 02:29:20] 2025-11-28 07:28:22,976 | INFO     | chi2: 2.4456276405350628
[2025-11-28 02:29:20] 2025-11-28 07:28:22,976 | INFO     | current chi2=2.4456276405350628 (change=51.66930703672771 %)
[2025-11-28 02:29:20] 2025-11-28 07:28:22,977 | INFO     | sum of square deviations: 320428540421.43195
[2025-11-28 02:29:20] 2025-11-28 07:28:22,997 | INFO     | sum of deviations: 2277859708368.412
[2025-11-28 02:29:20] 2025-11-28 07:28:22,997 | INFO     | mean x: 1764283458.7972305
[2025-11-28 02:29:20] 2025-11-28 07:28:22,997 | INFO     | mean y: 2871770.6458951533
[2025-11-28 02:29:20] 2025-11-28 07:28:22,997 | INFO     | intersect: -12539051616.233145
[2025-11-28 02:29:20] 2025-11-28 07:28:22,998 | INFO     | chi2: 2.177486591476913
[2025-11-28 02:29:20] 2025-11-28 07:28:22,998 | INFO     | current chi2=2.177486591476913 (change=10.964099547038368 %)
[2025-11-28 02:29:20] 2025-11-28 07:28:22,998 | INFO     | right removable region: 1010
[2025-11-28 02:29:20] 2025-11-28 07:28:22,999 | INFO     | sum of square deviations: 325205554674.181
[2025-11-28 02:29:20] 2025-11-28 07:28:23,016 | INFO     | sum of deviations: 1685967262444.5132
[2025-11-28 02:29:20] 2025-11-28 07:28:23,016 | INFO     | mean x: 1764283916.2923229
[2025-11-28 02:29:20] 2025-11-28 07:28:23,016 | INFO     | mean y: 2868209.6043307087
[2025-11-28 02:29:20] 2025-11-28 07:28:23,016 | INFO     | intersect: -9143731169.690983
[2025-11-28 02:29:20] 2025-11-28 07:28:23,018 | INFO     | chi2: 3.251387659590587
[2025-11-28 02:29:20] 2025-11-28 07:28:23,018 | INFO     | current chi2=3.251387659590587 (change=35.74581180074284 %)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,019 | INFO     | sum of square deviations: 320427805373.78625
[2025-11-28 02:29:20] 2025-11-28 07:28:23,037 | INFO     | sum of deviations: 1603070882961.5369
[2025-11-28 02:29:20] 2025-11-28 07:28:23,037 | INFO     | mean x: 1764284068.793274
[2025-11-28 02:29:20] 2025-11-28 07:28:23,037 | INFO     | mean y: 2870855.079129575
[2025-11-28 02:29:20] 2025-11-28 07:28:23,037 | INFO     | intersect: -8823680313.463072
[2025-11-28 02:29:20] 2025-11-28 07:28:23,038 | INFO     | chi2: 3.161176836246398
[2025-11-28 02:29:20] 2025-11-28 07:28:23,038 | INFO     | current chi2=3.161176836246398 (change=2.7745329929544 %)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,038 | INFO     | left removable region: 20
[2025-11-28 02:29:20] 2025-11-28 07:28:23,039 | INFO     | sum of square deviations: 300872718499.48364
[2025-11-28 02:29:20] 2025-11-28 07:28:23,060 | INFO     | sum of deviations: 1824929683357.6892
[2025-11-28 02:29:20] 2025-11-28 07:28:23,061 | INFO     | mean x: 1764284038.3040404
[2025-11-28 02:29:20] 2025-11-28 07:28:23,061 | INFO     | mean y: 2886233.8282828284
[2025-11-28 02:29:20] 2025-11-28 07:28:23,061 | INFO     | intersect: -10698297733.373926
[2025-11-28 02:29:20] 2025-11-28 07:28:23,062 | INFO     | chi2: 0.19872807961714486
[2025-11-28 02:29:20] 2025-11-28 07:28:23,062 | INFO     | time since job start (62273s) is within the limit (172800.0s)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,062 | INFO     | current memory leak: 6.07 B/s (using 990 data points, chi2=0.20)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,063 | INFO     | could have reported an average CPU frequency of 2996 MHz (37 samples)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,063 | INFO     | ..............................
[2025-11-28 02:29:20] 2025-11-28 07:28:23,063 | INFO     | . Timing measurements:
[2025-11-28 02:29:20] 2025-11-28 07:28:23,063 | INFO     | . get job = 0 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,063 | INFO     | . initial setup = 0 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,063 | INFO     | . payload setup = 4 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,064 | INFO     | . stage-in = 0 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,064 | INFO     | . payload execution = 62241 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,064 | INFO     | . stage-out = 3 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,064 | INFO     | . log creation = 0 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,064 | INFO     | ..............................
[2025-11-28 02:29:20] 2025-11-28 07:28:23,129 | INFO     | 
[2025-11-28 02:29:20] 2025-11-28 07:28:23,129 | INFO     | job summary report
[2025-11-28 02:29:20] 2025-11-28 07:28:23,130 | INFO     | --------------------------------------------------
[2025-11-28 02:29:20] 2025-11-28 07:28:23,130 | INFO     | PanDA job id: 6897139623
[2025-11-28 02:29:20] 2025-11-28 07:28:23,130 | INFO     | task id: 47556161
[2025-11-28 02:29:20] 2025-11-28 07:28:23,130 | INFO     | errors: (none)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,130 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:29:20] 2025-11-28 07:28:23,130 | INFO     | pilot state: finished 
[2025-11-28 02:29:20] 2025-11-28 07:28:23,130 | INFO     | transexitcode: 0
[2025-11-28 02:29:20] 2025-11-28 07:28:23,131 | INFO     | exeerrorcode: 0
[2025-11-28 02:29:20] 2025-11-28 07:28:23,131 | INFO     | exeerrordiag: 
[2025-11-28 02:29:20] 2025-11-28 07:28:23,131 | INFO     | exitcode: 0
[2025-11-28 02:29:20] 2025-11-28 07:28:23,131 | INFO     | exitmsg: OK
[2025-11-28 02:29:20] 2025-11-28 07:28:23,131 | INFO     | cpuconsumptiontime: 480387 s
[2025-11-28 02:29:20] 2025-11-28 07:28:23,131 | INFO     | nevents: 1000
[2025-11-28 02:29:20] 2025-11-28 07:28:23,131 | INFO     | neventsw: 0
[2025-11-28 02:29:20] 2025-11-28 07:28:23,132 | INFO     | pid: 33814
[2025-11-28 02:29:20] 2025-11-28 07:28:23,132 | INFO     | pgrp: 33814
[2025-11-28 02:29:20] 2025-11-28 07:28:23,132 | INFO     | corecount: 8
[2025-11-28 02:29:20] 2025-11-28 07:28:23,132 | INFO     | event service: False
[2025-11-28 02:29:20] 2025-11-28 07:28:23,132 | INFO     | sizes: {0: 2284265, 3: 2284527, 11: 2284555, 62248: 2337274, 62249: 2337273, 62253: 2346507, 62258: 2346697}
[2025-11-28 02:29:20] 2025-11-28 07:28:23,132 | INFO     | --------------------------------------------------
[2025-11-28 02:29:20] 2025-11-28 07:28:23,133 | INFO     | 
[2025-11-28 02:29:20] 2025-11-28 07:28:23,133 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 02:29:20] 2025-11-28 07:28:23,147 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,148 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,148 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,148 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,148 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,148 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,149 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,149 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,149 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,149 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,149 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,149 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,149 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,150 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,150 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,150 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,150 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,150 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:29:20] 2025-11-28 07:28:23,151 | INFO     | job 6897139623 has completed (purged errors)
[2025-11-28 02:29:20] 2025-11-28 07:28:23,151 | INFO     | overall cleanup function is called
[2025-11-28 02:29:20] 2025-11-28 07:28:24,166 | INFO     | --- collectZombieJob: --- 10, [33814]
[2025-11-28 02:29:20] 2025-11-28 07:28:24,166 | INFO     | zombie collector waiting for pid 33814
[2025-11-28 02:29:20] 2025-11-28 07:28:24,166 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:29:20] 2025-11-28 07:28:24,166 | INFO     | collected zombie processes
[2025-11-28 02:29:20] 2025-11-28 07:28:24,166 | INFO     | will attempt to kill all subprocesses of pid=33814
[2025-11-28 02:29:20] 2025-11-28 07:28:24,323 | INFO     | process IDs to be killed: [33814] (in reverse order)
[2025-11-28 02:29:20] 2025-11-28 07:28:24,398 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:29:20] 2025-11-28 07:28:24,398 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:29:20] 2025-11-28 07:28:24,404 | INFO     | did not find any defunct processes belonging to 33814
[2025-11-28 02:29:20] 2025-11-28 07:28:24,408 | INFO     | did not find any defunct processes belonging to 33814
[2025-11-28 02:29:20] 2025-11-28 07:28:24,409 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:29:20] 2025-11-28 07:28:24,409 | INFO     | ready for new job
[2025-11-28 02:29:20] 2025-11-28 07:28:24,409 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:29:20] 2025-11-28 07:28:24,413 | INFO     | ***************************************
[2025-11-28 02:29:20] 2025-11-28 07:28:24,413 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:29:20] 2025-11-28 07:28:24,413 | INFO     | ***************************************
[2025-11-28 02:29:20] 2025-11-28 07:28:24,413 | INFO     | 
[2025-11-28 02:29:20] 2025-11-28 07:28:24,414 | INFO     | architecture information:
[2025-11-28 02:29:20] 2025-11-28 07:28:24,415 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:29:20] 2025-11-28 07:28:24,426 | INFO     | cat /etc/os-release:
[2025-11-28 02:29:20] NAME="CentOS Linux"
[2025-11-28 02:29:20] VERSION="7 (Core)"
[2025-11-28 02:29:20] ID="centos"
[2025-11-28 02:29:20] ID_LIKE="rhel fedora"
[2025-11-28 02:29:20] VERSION_ID="7"
[2025-11-28 02:29:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:29:20] ANSI_COLOR="0;31"
[2025-11-28 02:29:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:29:20] HOME_URL="https://www.centos.org/"
[2025-11-28 02:29:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:29:20] 
[2025-11-28 02:29:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:29:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:29:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:29:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:29:20] 
[2025-11-28 02:29:20] 2025-11-28 07:28:24,426 | INFO     | ***************************************
[2025-11-28 02:29:20] 2025-11-28 07:28:24,928 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 02:29:20] 2025-11-28 07:28:24,942 | INFO     | sufficient remaining disk space (102023299072 B)
[2025-11-28 02:29:20] 2025-11-28 07:28:24,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:29:20] 2025-11-28 07:28:24,943 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:29:20] 2025-11-28 07:28:24,943 | INFO     | update_server=False
[2025-11-28 02:29:20] 2025-11-28 07:28:24,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:29:20] 2025-11-28 07:28:24,943 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-28 02:29:20] 2025-11-28 07:28:24,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:29:20] 2025-11-28 07:28:24,944 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:29:20] 2025-11-28 07:28:24,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:29:20] 2025-11-28 07:28:24,944 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:29:20] 2025-11-28 07:28:24,945 | INFO     | aborting loop
[2025-11-28 02:29:20] 2025-11-28 07:28:24,945 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:29:20] 2025-11-28 07:28:24,945 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:29:20] 2025-11-28 07:28:25,313 | INFO     | all job control threads have been joined
[2025-11-28 02:29:20] 2025-11-28 07:28:25,507 | INFO     | all data control threads have been joined
[2025-11-28 02:29:20] 2025-11-28 07:28:25,945 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:25,949 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:25,950 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:25,997 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,062 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,117 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:29:20] 2025-11-28 07:28:26,319 | INFO     | [job] control thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,337 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,424 | INFO     | all payload control threads have been joined
[2025-11-28 02:29:20] 2025-11-28 07:28:26,513 | INFO     | [data] control thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,720 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,731 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,795 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:26,961 | INFO     | [job] validate thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:27,169 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:27,430 | INFO     | [payload] control thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:28,123 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:28:28,951 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:29:20] 2025-11-28 07:29:14,351 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:29:20] 2025-11-28 07:29:14,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139946329585472)>', '<ExcThread(monitor, started 139945888945920)>']
[2025-11-28 02:29:20] 2025-11-28 07:29:15,181 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:29:20] 2025-11-28 07:29:15,181 | INFO     | [monitor] control thread has ended
[2025-11-28 02:29:20] 2025-11-28 07:29:20,011 | INFO     | all workflow threads have been joined
[2025-11-28 02:29:20] 2025-11-28 07:29:20,012 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:29:20] 2025-11-28 07:29:20,012 | INFO     | traces error code: 0
[2025-11-28 02:29:20] 2025-11-28 07:29:20,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:29:20] 2025-11-28 07:29:20,137 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:29:20] 2025-11-28 07:29:20,139 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:29:20] 2025-11-28 07:29:20,141 [wrapper] pilotpid: 11713
[2025-11-28 02:29:20] 2025-11-28 07:29:20,143 [wrapper] Pilot exit status: 0
[2025-11-28 02:29:20] 2025-11-28 07:29:20,150 [wrapper] pandaids: 6897139623 6897139623
[2025-11-28 02:29:20] 2025-11-28 07:29:20,197 [wrapper] cleanup supervisor_pilot 33647 11716
[2025-11-28 02:29:20] 2025-11-28 07:29:20,199 [wrapper] Test setup, not cleaning
[2025-11-28 02:29:20] 2025-11-28 07:29:20,201 [wrapper] apfmon messages muted
[2025-11-28 02:29:20] 2025-11-28 07:29:20,203 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:29:20] 2025-11-28 07:29:20,205 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:29:20]  *** Error codes and diagnostics ***
[2025-11-28 02:29:20]     "exeErrorCode": 0,
[2025-11-28 02:29:20]     "exeErrorDiag": "",
[2025-11-28 02:29:20]     "pilotErrorCode": 0,
[2025-11-28 02:29:20]     "pilotErrorDiag": "",
[2025-11-28 02:29:20]  *** Listing of results directory ***
[2025-11-28 02:29:20] total 1721384
[2025-11-28 02:29:20] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-28 02:29:20] -rwx------ 1 boincer umatlas     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas       100 Nov 27 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:29:20] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 06:28 run_atlas
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas       105 Nov 27 06:28 job.xml
[2025-11-28 02:29:20] -rw-r--r-- 3 boincer umatlas 408134983 Nov 27 06:28 EVNT.47483658._002191.pool.root.1
[2025-11-28 02:29:20] -rw-r--r-- 3 boincer umatlas 408134983 Nov 27 06:28 ATLAS.root_0
[2025-11-28 02:29:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:28 start_atlas.sh
[2025-11-28 02:29:20] drwxrwx--x 2 boincer umatlas      4096 Nov 27 06:28 shared
[2025-11-28 02:29:20] -rw-r--r-- 2 boincer umatlas    590112 Nov 27 06:28 input.tar.gz
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas         0 Nov 27 06:28 boinc_lockfile
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 09:10 pandaJob.out
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas        57 Nov 27 09:10 setup.sh.local
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas    991588 Nov 27 09:10 agis_schedconf.cvmfs.json
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas       533 Nov 28 02:19 boinc_task_state.xml
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas      6038 Nov 28 02:21 init_data.xml
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas 920991140 Nov 28 02:27 HITS.47556161._001746.pool.root.1
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas      1060 Nov 28 02:28 memory_monitor_summary.json
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas   1516240 Nov 28 02:28 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas   2211360 Nov 28 02:28 log.47556161._001746.job.log.tgz.1
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas      8634 Nov 28 02:28 heartbeat.json
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas        96 Nov 28 02:28 pilot_heartbeat.json
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 02:29 boinc_mmap_file
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas        29 Nov 28 02:29 wrapper_checkpoint.txt
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas      4553 Nov 28 02:29 pilotlog.txt
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas   8542304 Nov 28 02:29 log.47556161._001746.job.log.1
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas       353 Nov 28 02:29 output.list
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas       620 Nov 28 02:29 runtime_log
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas  10772480 Nov 28 02:29 result.tar.gz
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas      9418 Nov 28 02:29 runtime_log.err
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas       790 Nov 28 02:29 BloMDmTWBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTXJKDmZGBp6m.diag
[2025-11-28 02:29:20] -rw-r--r-- 1 boincer umatlas     23399 Nov 28 02:29 stderr.txt
[2025-11-28 02:29:20] HITS file was successfully produced:
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas 920991140 Nov 28 02:27 shared/HITS.pool.root.1
[2025-11-28 02:29:20]  *** Contents of shared directory: ***
[2025-11-28 02:29:20] total 1309104
[2025-11-28 02:29:20] -rw-r--r-- 3 boincer umatlas 408134983 Nov 27 06:28 ATLAS.root_0
[2025-11-28 02:29:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:28 start_atlas.sh
[2025-11-28 02:29:20] -rw-r--r-- 2 boincer umatlas    590112 Nov 27 06:28 input.tar.gz
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas 920991140 Nov 28 02:27 HITS.pool.root.1
[2025-11-28 02:29:20] -rw------- 1 boincer umatlas  10772480 Nov 28 02:29 result.tar.gz
02:29:22 (45591): run_atlas exited; CPU time 480368.015784
02:29:22 (45591): called boinc_finish(0)

</stderr_txt>
]]>

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