Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:02:35 (8003): wrapper (7.7.26015): starting
07:02:35 (8003): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:02:35] Arguments: --nthreads 8
[2025-11-27 07:02:35] Threads: 8
[2025-11-27 07:02:35] Checking for CVMFS
[2025-11-27 07:02:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:02:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:02:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:02:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:02:36] 2.11.2.0 10816 119069 138184 153362 3 82 10933737 18432000 1885 130560 0 85774312 99.974 5038597 28731 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 07:02:36] CVMFS is ok
[2025-11-27 07:02:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:02:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:02:36] Further information can be found at the LHC@home message board.
[2025-11-27 07:02:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:02:36] Checking for apptainer binary...
[2025-11-27 07:02:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:02:36] Running /usr/bin/apptainer --version
[2025-11-27 07:02:36] apptainer version 1.3.2-1.el7
[2025-11-27 07:02:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:02:36] c-206-11.aglt2.org
[2025-11-27 07:02:36] apptainer works
[2025-11-27 07:02:36] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:02:36] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:02:36] Starting ATLAS job with PandaID=6898271181
[2025-11-27 07:02:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:46:25 (10666): wrapper (7.7.26015): starting
20:46:25 (10666): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 20:46:25] Arguments: --nthreads 8
[2025-11-27 20:46:25] Threads: 8
[2025-11-27 20:46:25] This job has been restarted, cleaning up previous attempt
[2025-11-27 20:46:25] Checking for CVMFS
[2025-11-27 20:46:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 20:46:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 20:46:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 20:46:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 20:46:25] 2.11.2.0 10816 119893 137560 153392 0 57 11117865 18432000 1 130560 0 86470958 99.975 5076797 28763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 20:46:25] CVMFS is ok
[2025-11-27 20:46:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 20:46:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 20:46:25] Further information can be found at the LHC@home message board.
[2025-11-27 20:46:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 20:46:25] Checking for apptainer binary...
[2025-11-27 20:46:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 20:46:25] Running /usr/bin/apptainer --version
[2025-11-27 20:46:25] apptainer version 1.3.2-1.el7
[2025-11-27 20:46:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 20:46:26] c-206-11.aglt2.org
[2025-11-27 20:46:26] apptainer works
[2025-11-27 20:46:26] Set ATHENA_PROC_NUMBER=8
[2025-11-27 20:46:26] Set ATHENA_CORE_NUMBER=8
[2025-11-27 20:46:26] Starting ATLAS job with PandaID=6898271181
[2025-11-27 20:46:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:25:43]  *** The last 200 lines of the pilot log: ***
[2025-11-28 16:25:43] 2025-11-28 21:24:49,143 | INFO     | monitor loop #5046: job 0:6898271181 is in state 'finished'
[2025-11-28 16:25:43] 2025-11-28 21:24:49,143 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:25:43] 2025-11-28 21:24:50,734 | INFO     | time since job start (70691s) is within the limit (172800.0s)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,307 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 16:25:43] 2025-11-28 21:24:51,312 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1784.4583333333333
[2025-11-28 16:25:43] 2025-11-28 21:24:51,315 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898271181/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,316 | INFO     | extracted standard info from prmon json
[2025-11-28 16:25:43] 2025-11-28 21:24:51,316 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:25:43] 2025-11-28 21:24:51,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:25:43] 2025-11-28 21:24:51,333 | INFO     | fitting pss+swap vs Time
[2025-11-28 16:25:43] 2025-11-28 21:24:51,335 | INFO     | sum of square deviations: 482756448725.5598
[2025-11-28 16:25:43] 2025-11-28 21:24:51,362 | INFO     | sum of deviations: 2352527043685.3413
[2025-11-28 16:25:43] 2025-11-28 21:24:51,362 | INFO     | mean x: 1764329746.7998273
[2025-11-28 16:25:43] 2025-11-28 21:24:51,363 | INFO     | mean y: 2869210.7126833475
[2025-11-28 16:25:43] 2025-11-28 21:24:51,363 | INFO     | intersect: -8594910175.316153
[2025-11-28 16:25:43] 2025-11-28 21:24:51,364 | INFO     | chi2: 5.5119714158736075
[2025-11-28 16:25:43] 2025-11-28 21:24:51,365 | INFO     | sum of square deviations: 476535712489.84705
[2025-11-28 16:25:43] 2025-11-28 21:24:51,394 | INFO     | sum of deviations: 2711796615669.269
[2025-11-28 16:25:43] 2025-11-28 21:24:51,394 | INFO     | mean x: 1764329594.303293
[2025-11-28 16:25:43] 2025-11-28 21:24:51,395 | INFO     | mean y: 2878013.7963604853
[2025-11-28 16:25:43] 2025-11-28 21:24:51,395 | INFO     | intersect: -10037299243.346233
[2025-11-28 16:25:43] 2025-11-28 21:24:51,396 | INFO     | chi2: 2.701450652640719
[2025-11-28 16:25:43] 2025-11-28 21:24:51,396 | INFO     | current chi2=2.701450652640719 (change=50.98939292644066 %)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,397 | INFO     | sum of square deviations: 470368651679.1076
[2025-11-28 16:25:43] 2025-11-28 21:24:51,425 | INFO     | sum of deviations: 2796548253561.301
[2025-11-28 16:25:43] 2025-11-28 21:24:51,425 | INFO     | mean x: 1764329441.8067884
[2025-11-28 16:25:43] 2025-11-28 21:24:51,425 | INFO     | mean y: 2880104.807658834
[2025-11-28 16:25:43] 2025-11-28 21:24:51,426 | INFO     | intersect: -10486833445.570753
[2025-11-28 16:25:43] 2025-11-28 21:24:51,427 | INFO     | chi2: 2.338647668328398
[2025-11-28 16:25:43] 2025-11-28 21:24:51,427 | INFO     | current chi2=2.338647668328398 (change=13.429931949994145 %)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,427 | INFO     | right removable region: 1148
[2025-11-28 16:25:43] 2025-11-28 21:24:51,428 | INFO     | sum of square deviations: 476535147019.84753
[2025-11-28 16:25:43] 2025-11-28 21:24:51,457 | INFO     | sum of deviations: 2068742466903.5613
[2025-11-28 16:25:43] 2025-11-28 21:24:51,457 | INFO     | mean x: 1764329899.303293
[2025-11-28 16:25:43] 2025-11-28 21:24:51,457 | INFO     | mean y: 2876157.8526863083
[2025-11-28 16:25:43] 2025-11-28 21:24:51,457 | INFO     | intersect: -7656462741.161173
[2025-11-28 16:25:43] 2025-11-28 21:24:51,458 | INFO     | chi2: 3.5506830351000964
[2025-11-28 16:25:43] 2025-11-28 21:24:51,458 | INFO     | current chi2=3.5506830351000964 (change=35.5823394715965 %)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,460 | INFO     | sum of square deviations: 470367872712.1469
[2025-11-28 16:25:43] 2025-11-28 21:24:51,486 | INFO     | sum of deviations: 1977066334688.0063
[2025-11-28 16:25:43] 2025-11-28 21:24:51,486 | INFO     | mean x: 1764330051.8024368
[2025-11-28 16:25:43] 2025-11-28 21:24:51,487 | INFO     | mean y: 2878424.4273281116
[2025-11-28 16:25:43] 2025-11-28 21:24:51,487 | INFO     | intersect: -7413014010.113225
[2025-11-28 16:25:43] 2025-11-28 21:24:51,488 | INFO     | chi2: 3.4650950194939028
[2025-11-28 16:25:43] 2025-11-28 21:24:51,488 | INFO     | current chi2=3.4650950194939028 (change=2.410466233119591 %)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,488 | INFO     | left removable region: 20
[2025-11-28 16:25:43] 2025-11-28 21:24:51,489 | INFO     | sum of square deviations: 445046528459.4042
[2025-11-28 16:25:43] 2025-11-28 21:24:51,514 | INFO     | sum of deviations: 2287427031908.1724
[2025-11-28 16:25:43] 2025-11-28 21:24:51,514 | INFO     | mean x: 1764330021.3102837
[2025-11-28 16:25:43] 2025-11-28 21:24:51,514 | INFO     | mean y: 2892646.9680851065
[2025-11-28 16:25:43] 2025-11-28 21:24:51,514 | INFO     | intersect: -9065319159.834934
[2025-11-28 16:25:43] 2025-11-28 21:24:51,515 | INFO     | chi2: 0.23006504093863261
[2025-11-28 16:25:43] 2025-11-28 21:24:51,516 | INFO     | current memory leak: 5.14 B/s (using 1128 data points, chi2=0.23)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,516 | INFO     | could have reported an average CPU frequency of 2563 MHz (42 samples)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | ..............................
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . Timing measurements:
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . get job = 0 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . initial setup = 2 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . payload setup = 7 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . stage-in = 0 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . payload execution = 70652 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . stage-out = 3 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,517 | INFO     | . log creation = 0 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,518 | INFO     | ..............................
[2025-11-28 16:25:43] 2025-11-28 21:24:51,599 | INFO     | 
[2025-11-28 16:25:43] 2025-11-28 21:24:51,599 | INFO     | job summary report
[2025-11-28 16:25:43] 2025-11-28 21:24:51,599 | INFO     | --------------------------------------------------
[2025-11-28 16:25:43] 2025-11-28 21:24:51,599 | INFO     | PanDA job id: 6898271181
[2025-11-28 16:25:43] 2025-11-28 21:24:51,599 | INFO     | task id: 47556161
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | errors: (none)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | pilot state: finished 
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | transexitcode: 0
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | exeerrorcode: 0
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | exeerrordiag: 
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | exitcode: 0
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | exitmsg: OK
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | cpuconsumptiontime: 550203 s
[2025-11-28 16:25:43] 2025-11-28 21:24:51,600 | INFO     | nevents: 1000
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | neventsw: 0
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | pid: 8746
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | pgrp: 8746
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | corecount: 8
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | event service: False
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | sizes: {0: 2284201, 1: 2284343, 5: 2284605, 11: 2284661, 70663: 2341374, 70667: 2350368, 70670: 2350552, 70677: 2350798}
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | --------------------------------------------------
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | 
[2025-11-28 16:25:43] 2025-11-28 21:24:51,601 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 16:25:43] 2025-11-28 21:24:51,617 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,618 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,618 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,618 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,618 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,618 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,618 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,618 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,620 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 16:25:43] 2025-11-28 21:24:51,620 | INFO     | job 6898271181 has completed (purged errors)
[2025-11-28 16:25:43] 2025-11-28 21:24:51,621 | INFO     | overall cleanup function is called
[2025-11-28 16:25:43] 2025-11-28 21:24:52,636 | INFO     | --- collectZombieJob: --- 10, [8746]
[2025-11-28 16:25:43] 2025-11-28 21:24:52,636 | INFO     | zombie collector waiting for pid 8746
[2025-11-28 16:25:43] 2025-11-28 21:24:52,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 16:25:43] 2025-11-28 21:24:52,636 | INFO     | collected zombie processes
[2025-11-28 16:25:43] 2025-11-28 21:24:52,636 | INFO     | will attempt to kill all subprocesses of pid=8746
[2025-11-28 16:25:43] 2025-11-28 21:24:52,755 | INFO     | process IDs to be killed: [8746] (in reverse order)
[2025-11-28 16:25:43] 2025-11-28 21:24:52,805 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 16:25:43] 2025-11-28 21:24:52,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 16:25:43] 2025-11-28 21:24:52,808 | INFO     | did not find any defunct processes belonging to 8746
[2025-11-28 16:25:43] 2025-11-28 21:24:52,810 | INFO     | did not find any defunct processes belonging to 8746
[2025-11-28 16:25:43] 2025-11-28 21:24:52,812 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 16:25:43] 2025-11-28 21:24:52,812 | INFO     | ready for new job
[2025-11-28 16:25:43] 2025-11-28 21:24:52,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 16:25:43] 2025-11-28 21:24:52,816 | INFO     | ***************************************
[2025-11-28 16:25:43] 2025-11-28 21:24:52,817 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 16:25:43] 2025-11-28 21:24:52,817 | INFO     | ***************************************
[2025-11-28 16:25:43] 2025-11-28 21:24:52,817 | INFO     | 
[2025-11-28 16:25:43] 2025-11-28 21:24:52,818 | INFO     | architecture information:
[2025-11-28 16:25:43] 2025-11-28 21:24:52,818 | INFO     | executing command: cat /etc/os-release
[2025-11-28 16:25:43] 2025-11-28 21:24:52,831 | INFO     | cat /etc/os-release:
[2025-11-28 16:25:43] NAME="CentOS Linux"
[2025-11-28 16:25:43] VERSION="7 (Core)"
[2025-11-28 16:25:43] ID="centos"
[2025-11-28 16:25:43] ID_LIKE="rhel fedora"
[2025-11-28 16:25:43] VERSION_ID="7"
[2025-11-28 16:25:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 16:25:43] ANSI_COLOR="0;31"
[2025-11-28 16:25:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 16:25:43] HOME_URL="https://www.centos.org/"
[2025-11-28 16:25:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 16:25:43] 
[2025-11-28 16:25:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 16:25:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 16:25:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 16:25:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 16:25:43] 
[2025-11-28 16:25:43] 2025-11-28 21:24:52,831 | INFO     | ***************************************
[2025-11-28 16:25:43] 2025-11-28 21:24:53,334 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 16:25:43] 2025-11-28 21:24:53,352 | INFO     | sufficient remaining disk space (25183649792 B)
[2025-11-28 16:25:43] 2025-11-28 21:24:53,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 16:25:43] 2025-11-28 21:24:53,352 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 16:25:43] 2025-11-28 21:24:53,352 | INFO     | update_server=False
[2025-11-28 16:25:43] 2025-11-28 21:24:53,352 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 16:25:43] 2025-11-28 21:24:53,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:25:43] 2025-11-28 21:24:53,353 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:25:43] 2025-11-28 21:24:53,353 | INFO     | aborting loop
[2025-11-28 16:25:43] 2025-11-28 21:24:53,702 | INFO     | all data control threads have been joined
[2025-11-28 16:25:43] 2025-11-28 21:24:54,074 | INFO     | all payload control threads have been joined
[2025-11-28 16:25:43] 2025-11-28 21:24:54,126 | INFO     | all job control threads have been joined
[2025-11-28 16:25:43] 2025-11-28 21:24:54,358 | INFO     | [job] retrieve thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:54,358 | INFO     | [job] queue monitor thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:54,359 | INFO     | [job] job monitor thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:54,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 16:25:43] 2025-11-28 21:24:54,619 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:54,697 | INFO     | [data] copytool_in thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:54,708 | INFO     | [data] control thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:54,960 | INFO     | [payload] validate_post thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:55,024 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:55,044 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 16:25:43] 2025-11-28 21:24:55,079 | INFO     | [payload] control thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:55,132 | INFO     | [job] control thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:55,382 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:55,781 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:55,848 | INFO     | [job] validate thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:55,870 | INFO     | [payload] failed_post thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:56,516 | INFO     | [data] copytool_out thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:24:59,049 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 16:25:43] 2025-11-28 21:25:23,941 | INFO     | PID=21770 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 16:25:43] 2025-11-28 21:25:23,941 | INFO     | .. there are 3 such processes running
[2025-11-28 16:25:43] 2025-11-28 21:25:23,960 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 16:25:43] 2025-11-28 21:25:23,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 16:25:43] 2025-11-28 21:25:23,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 16:25:43] 2025-11-28 21:25:37,257 | INFO     | [monitor] cgroup control has ended
[2025-11-28 16:25:43] 2025-11-28 21:25:38,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140451403491136)>', '<ExcThread(monitor, started 140450950256384)>']
[2025-11-28 16:25:43] 2025-11-28 21:25:39,036 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 16:25:43] 2025-11-28 21:25:39,036 | INFO     | [monitor] control thread has ended
[2025-11-28 16:25:43] 2025-11-28 21:25:43,287 | INFO     | all workflow threads have been joined
[2025-11-28 16:25:43] 2025-11-28 21:25:43,287 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 16:25:43] 2025-11-28 21:25:43,287 | INFO     | traces error code: 0
[2025-11-28 16:25:43] 2025-11-28 21:25:43,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 16:25:43] 2025-11-28 21:25:43,400 [wrapper] ==== pilot stdout END ====
[2025-11-28 16:25:43] 2025-11-28 21:25:43,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 16:25:43] 2025-11-28 21:25:43,405 [wrapper] pilotpid: 21770
[2025-11-28 16:25:43] 2025-11-28 21:25:43,408 [wrapper] Pilot exit status: 0
[2025-11-28 16:25:43] 2025-11-28 21:25:43,416 [wrapper] pandaids: 6898271181 6898271181
[2025-11-28 16:25:43] 2025-11-28 21:25:43,449 [wrapper] cleanup supervisor_pilot 31841 21772
[2025-11-28 16:25:43] 2025-11-28 21:25:43,452 [wrapper] Test setup, not cleaning
[2025-11-28 16:25:43] 2025-11-28 21:25:43,455 [wrapper] apfmon messages muted
[2025-11-28 16:25:43] 2025-11-28 21:25:43,457 [wrapper] ==== wrapper stdout END ====
[2025-11-28 16:25:43] 2025-11-28 21:25:43,460 [wrapper] ==== wrapper stderr END ====
[2025-11-28 16:25:43]  *** Error codes and diagnostics ***
[2025-11-28 16:25:43]     "exeErrorCode": 0,
[2025-11-28 16:25:43]     "exeErrorDiag": "",
[2025-11-28 16:25:43]     "pilotErrorCode": 0,
[2025-11-28 16:25:43]     "pilotErrorDiag": "",
[2025-11-28 16:25:43]  *** Listing of results directory ***
[2025-11-28 16:25:43] total 1740916
[2025-11-28 16:25:43] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 09:19 pilot3.tar.gz
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 09:47 queuedata.json
[2025-11-28 16:25:43] -rwx------ 1 boincer umatlas     36292 Nov 26 09:49 runpilot2-wrapper.sh
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas       100 Nov 27 07:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 16:25:43] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 07:02 run_atlas
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas       105 Nov 27 07:02 job.xml
[2025-11-28 16:25:43] -rw-r--r-- 3 boincer umatlas 410716070 Nov 27 07:02 EVNT.47483658._002525.pool.root.1
[2025-11-28 16:25:43] -rw-r--r-- 3 boincer umatlas 410716070 Nov 27 07:02 ATLAS.root_0
[2025-11-28 16:25:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 07:02 start_atlas.sh
[2025-11-28 16:25:43] drwxrwx--x 2 boincer umatlas      4096 Nov 27 07:02 shared
[2025-11-28 16:25:43] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 07:02 input.tar.gz
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas         0 Nov 27 07:02 boinc_lockfile
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 20:46 pandaJob.out
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas        57 Nov 27 20:46 setup.sh.local
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas    991866 Nov 27 20:46 agis_schedconf.cvmfs.json
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas       534 Nov 28 16:15 boinc_task_state.xml
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas      5955 Nov 28 16:22 init_data.xml
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas 933195724 Nov 28 16:24 HITS.47556161._005073.pool.root.1
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas        96 Nov 28 16:24 pilot_heartbeat.json
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas      1065 Nov 28 16:24 memory_monitor_summary.json
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas   1516240 Nov 28 16:24 agis_ddmendpoints.agis.ALL.json
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas   2308213 Nov 28 16:24 log.47556161._005073.job.log.tgz.1
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas      8652 Nov 28 16:24 heartbeat.json
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 16:25 boinc_mmap_file
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas        30 Nov 28 16:25 wrapper_checkpoint.txt
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas      4821 Nov 28 16:25 pilotlog.txt
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas   9767819 Nov 28 16:25 log.47556161._005073.job.log.1
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas       353 Nov 28 16:25 output.list
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas       620 Nov 28 16:25 runtime_log
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas  12093440 Nov 28 16:25 result.tar.gz
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas      9428 Nov 28 16:25 runtime_log.err
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas       793 Nov 28 16:25 O28MDm30Vi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA2MKDmLqE5Ln.diag
[2025-11-28 16:25:43] -rw-r--r-- 1 boincer umatlas     23457 Nov 28 16:25 stderr.txt
[2025-11-28 16:25:43] HITS file was successfully produced:
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas 933195724 Nov 28 16:24 shared/HITS.pool.root.1
[2025-11-28 16:25:43]  *** Contents of shared directory: ***
[2025-11-28 16:25:43] total 1324828
[2025-11-28 16:25:43] -rw-r--r-- 3 boincer umatlas 410716070 Nov 27 07:02 ATLAS.root_0
[2025-11-28 16:25:43] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 07:02 start_atlas.sh
[2025-11-28 16:25:43] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 07:02 input.tar.gz
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas 933195724 Nov 28 16:24 HITS.pool.root.1
[2025-11-28 16:25:43] -rw------- 1 boincer umatlas  12093440 Nov 28 16:25 result.tar.gz
16:25:44 (10666): run_atlas exited; CPU time 549414.465561
16:25:44 (10666): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN