Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:29:37 (39937): wrapper (7.7.26015): starting
06:29:37 (39937): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:29:37] Arguments: --nthreads 8
[2025-11-27 06:29:37] Threads: 8
[2025-11-27 06:29:37] Checking for CVMFS
[2025-11-27 06:29:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:29:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:29:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:29:38] 2.11.2.0 13817 546740 305372 153362 2 90 13764478 18432000 2432 130560 8 262062179 99.609 266463053 24621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 06:29:38] CVMFS is ok
[2025-11-27 06:29:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:29:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:29:38] Further information can be found at the LHC@home message board.
[2025-11-27 06:29:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:29:38] Checking for apptainer binary...
[2025-11-27 06:29:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:29:38] Running /usr/bin/apptainer --version
[2025-11-27 06:29:38] apptainer version 1.3.2-1.el7
[2025-11-27 06:29:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:29:39] c-9-29.aglt2.org
[2025-11-27 06:29:39] apptainer works
[2025-11-27 06:29:39] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:29:39] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:29:39] Starting ATLAS job with PandaID=6898271178
[2025-11-27 06:29:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:10:21 (45594): wrapper (7.7.26015): starting
09:10:21 (45594): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:10:21] Arguments: --nthreads 8
[2025-11-27 09:10:21] Threads: 8
[2025-11-27 09:10:21] This job has been restarted, cleaning up previous attempt
[2025-11-27 09:10:21] Checking for CVMFS
[2025-11-27 09:10:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:10:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:10:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:10:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:10:21] 2.11.2.0 13817 546901 297656 153366 2 56 13795287 18432001 1 130560 8 262262553 99.610 266466954 24621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 09:10:21] CVMFS is ok
[2025-11-27 09:10:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:10:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:10:21] Further information can be found at the LHC@home message board.
[2025-11-27 09:10:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:10:21] Checking for apptainer binary...
[2025-11-27 09:10:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:10:21] Running /usr/bin/apptainer --version
[2025-11-27 09:10:21] apptainer version 1.3.2-1.el7
[2025-11-27 09:10:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:10:22] c-9-29.aglt2.org
[2025-11-27 09:10:22] apptainer works
[2025-11-27 09:10:22] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:10:22] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:10:22] Starting ATLAS job with PandaID=6898271178
[2025-11-27 09:10:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:25:20]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:25:20] 2025-11-28 07:24:18,623 | INFO     | maximum number of monitored processes: 16
[2025-11-28 02:25:20] 2025-11-28 07:24:19,340 | INFO     | time since job start (62029s) is within the limit (172800.0s)
[2025-11-28 02:25:20] 2025-11-28 07:24:19,917 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 02:25:20] 2025-11-28 07:24:19,921 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 3020.0160625000003
[2025-11-28 02:25:20] 2025-11-28 07:24:19,925 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898271178/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:25:20] 2025-11-28 07:24:19,925 | INFO     | extracted standard info from prmon json
[2025-11-28 02:25:20] 2025-11-28 07:24:19,925 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:25:20] 2025-11-28 07:24:19,925 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:25:20] 2025-11-28 07:24:19,937 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:25:20] 2025-11-28 07:24:19,938 | INFO     | sum of square deviations: 326166782597.22125
[2025-11-28 02:25:20] 2025-11-28 07:24:19,953 | INFO     | sum of deviations: 1853010591588.9465
[2025-11-28 02:25:20] 2025-11-28 07:24:19,953 | INFO     | mean x: 1764283641.7787611
[2025-11-28 02:25:20] 2025-11-28 07:24:19,953 | INFO     | mean y: 2863402.830875123
[2025-11-28 02:25:20] 2025-11-28 07:24:19,953 | INFO     | intersect: -10020340826.461525
[2025-11-28 02:25:20] 2025-11-28 07:24:19,954 | INFO     | chi2: 4.9717486900137615
[2025-11-28 02:25:20] 2025-11-28 07:24:19,955 | INFO     | sum of square deviations: 321379901839.17377
[2025-11-28 02:25:20] 2025-11-28 07:24:19,970 | INFO     | sum of deviations: 2143560703033.4326
[2025-11-28 02:25:20] 2025-11-28 07:24:19,970 | INFO     | mean x: 1764283489.2826087
[2025-11-28 02:25:20] 2025-11-28 07:24:19,970 | INFO     | mean y: 2872650.411067194
[2025-11-28 02:25:20] 2025-11-28 07:24:19,970 | INFO     | intersect: -11764660835.641941
[2025-11-28 02:25:20] 2025-11-28 07:24:19,971 | INFO     | chi2: 2.3771861641579988
[2025-11-28 02:25:20] 2025-11-28 07:24:19,971 | INFO     | current chi2=2.3771861641579988 (change=52.18611574368577 %)
[2025-11-28 02:25:20] 2025-11-28 07:24:19,972 | INFO     | sum of square deviations: 316640091731.09595
[2025-11-28 02:25:20] 2025-11-28 07:24:19,987 | INFO     | sum of deviations: 2205715105470.0254
[2025-11-28 02:25:20] 2025-11-28 07:24:19,987 | INFO     | mean x: 1764283336.7864945
[2025-11-28 02:25:20] 2025-11-28 07:24:19,987 | INFO     | mean y: 2874645.148957299
[2025-11-28 02:25:20] 2025-11-28 07:24:19,987 | INFO     | intersect: -12287124340.778135
[2025-11-28 02:25:20] 2025-11-28 07:24:19,988 | INFO     | chi2: 2.1038969779722745
[2025-11-28 02:25:20] 2025-11-28 07:24:19,988 | INFO     | current chi2=2.1038969779722745 (change=11.496330843004191 %)
[2025-11-28 02:25:20] 2025-11-28 07:24:19,988 | INFO     | right removable region: 1006
[2025-11-28 02:25:20] 2025-11-28 07:24:19,989 | INFO     | sum of square deviations: 321379418719.174
[2025-11-28 02:25:20] 2025-11-28 07:24:20,004 | INFO     | sum of deviations: 1619187167795.0645
[2025-11-28 02:25:20] 2025-11-28 07:24:20,004 | INFO     | mean x: 1764283794.2826087
[2025-11-28 02:25:20] 2025-11-28 07:24:20,004 | INFO     | mean y: 2870839.9298418975
[2025-11-28 02:25:20] 2025-11-28 07:24:20,005 | INFO     | intersect: -8886017227.129045
[2025-11-28 02:25:20] 2025-11-28 07:24:20,005 | INFO     | chi2: 3.2405412056472116
[2025-11-28 02:25:20] 2025-11-28 07:24:20,005 | INFO     | current chi2=3.2405412056472116 (change=34.82089687766897 %)
[2025-11-28 02:25:20] 2025-11-28 07:24:20,006 | INFO     | sum of square deviations: 316639372177.37256
[2025-11-28 02:25:20] 2025-11-28 07:24:20,021 | INFO     | sum of deviations: 1538882083936.712
[2025-11-28 02:25:20] 2025-11-28 07:24:20,021 | INFO     | mean x: 1764283946.7825224
[2025-11-28 02:25:20] 2025-11-28 07:24:20,022 | INFO     | mean y: 2873423.1996027804
[2025-11-28 02:25:20] 2025-11-28 07:24:20,022 | INFO     | intersect: -8571628661.019709
[2025-11-28 02:25:20] 2025-11-28 07:24:20,022 | INFO     | chi2: 3.156123005667228
[2025-11-28 02:25:20] 2025-11-28 07:24:20,022 | INFO     | current chi2=3.156123005667228 (change=2.6050648525274127 %)
[2025-11-28 02:25:20] 2025-11-28 07:24:20,023 | INFO     | left removable region: 20
[2025-11-28 02:25:20] 2025-11-28 07:24:20,023 | INFO     | sum of square deviations: 297240391013.8786
[2025-11-28 02:25:20] 2025-11-28 07:24:20,038 | INFO     | sum of deviations: 1765743332373.4692
[2025-11-28 02:25:20] 2025-11-28 07:24:20,038 | INFO     | mean x: 1764283916.2920892
[2025-11-28 02:25:20] 2025-11-28 07:24:20,038 | INFO     | mean y: 2888805.1754563893
[2025-11-28 02:25:20] 2025-11-28 07:24:20,038 | INFO     | intersect: -10477761388.361166
[2025-11-28 02:25:20] 2025-11-28 07:24:20,039 | INFO     | chi2: 0.21547841847475016
[2025-11-28 02:25:20] 2025-11-28 07:24:20,039 | INFO     | current memory leak: 5.94 B/s (using 986 data points, chi2=0.22)
[2025-11-28 02:25:20] 2025-11-28 07:24:20,039 | INFO     | could have reported an average CPU frequency of 2997 MHz (37 samples)
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | ..............................
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . Timing measurements:
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . get job = 0 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . initial setup = 0 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . payload setup = 4 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . stage-in = 0 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . payload execution = 61999 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . stage-out = 3 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | . log creation = 0 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,040 | INFO     | ..............................
[2025-11-28 02:25:20] 2025-11-28 07:24:20,111 | INFO     | 
[2025-11-28 02:25:20] 2025-11-28 07:24:20,112 | INFO     | job summary report
[2025-11-28 02:25:20] 2025-11-28 07:24:20,112 | INFO     | --------------------------------------------------
[2025-11-28 02:25:20] 2025-11-28 07:24:20,112 | INFO     | PanDA job id: 6898271178
[2025-11-28 02:25:20] 2025-11-28 07:24:20,112 | INFO     | task id: 47556161
[2025-11-28 02:25:20] 2025-11-28 07:24:20,112 | INFO     | errors: (none)
[2025-11-28 02:25:20] 2025-11-28 07:24:20,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:25:20] 2025-11-28 07:24:20,112 | INFO     | pilot state: finished 
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | transexitcode: 0
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | exeerrorcode: 0
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | exeerrordiag: 
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | exitcode: 0
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | exitmsg: OK
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | cpuconsumptiontime: 479332 s
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | nevents: 1000
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | neventsw: 0
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | pid: 33812
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | pgrp: 33812
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | corecount: 8
[2025-11-28 02:25:20] 2025-11-28 07:24:20,113 | INFO     | event service: False
[2025-11-28 02:25:20] 2025-11-28 07:24:20,114 | INFO     | sizes: {0: 2284315, 3: 2284577, 11: 2284605, 62006: 2337244, 62007: 2337243, 62010: 2346477, 62015: 2346667}
[2025-11-28 02:25:20] 2025-11-28 07:24:20,114 | INFO     | --------------------------------------------------
[2025-11-28 02:25:20] 2025-11-28 07:24:20,114 | INFO     | 
[2025-11-28 02:25:20] 2025-11-28 07:24:20,114 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 02:25:20] 2025-11-28 07:24:20,127 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | job 6898271178 has completed (purged errors)
[2025-11-28 02:25:20] 2025-11-28 07:24:20,129 | INFO     | overall cleanup function is called
[2025-11-28 02:25:20] 2025-11-28 07:24:21,141 | INFO     | --- collectZombieJob: --- 10, [33812]
[2025-11-28 02:25:20] 2025-11-28 07:24:21,142 | INFO     | zombie collector waiting for pid 33812
[2025-11-28 02:25:20] 2025-11-28 07:24:21,142 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:25:20] 2025-11-28 07:24:21,142 | INFO     | collected zombie processes
[2025-11-28 02:25:20] 2025-11-28 07:24:21,142 | INFO     | will attempt to kill all subprocesses of pid=33812
[2025-11-28 02:25:20] 2025-11-28 07:24:21,283 | INFO     | process IDs to be killed: [33812] (in reverse order)
[2025-11-28 02:25:20] 2025-11-28 07:24:21,331 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:25:20] 2025-11-28 07:24:21,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:25:20] 2025-11-28 07:24:21,335 | INFO     | did not find any defunct processes belonging to 33812
[2025-11-28 02:25:20] 2025-11-28 07:24:21,339 | INFO     | did not find any defunct processes belonging to 33812
[2025-11-28 02:25:20] 2025-11-28 07:24:21,340 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:25:20] 2025-11-28 07:24:21,340 | INFO     | ready for new job
[2025-11-28 02:25:20] 2025-11-28 07:24:21,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:25:20] 2025-11-28 07:24:21,344 | INFO     | ***************************************
[2025-11-28 02:25:20] 2025-11-28 07:24:21,344 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:25:20] 2025-11-28 07:24:21,344 | INFO     | ***************************************
[2025-11-28 02:25:20] 2025-11-28 07:24:21,344 | INFO     | 
[2025-11-28 02:25:20] 2025-11-28 07:24:21,345 | INFO     | architecture information:
[2025-11-28 02:25:20] 2025-11-28 07:24:21,346 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:25:20] 2025-11-28 07:24:21,356 | INFO     | cat /etc/os-release:
[2025-11-28 02:25:20] NAME="CentOS Linux"
[2025-11-28 02:25:20] VERSION="7 (Core)"
[2025-11-28 02:25:20] ID="centos"
[2025-11-28 02:25:20] ID_LIKE="rhel fedora"
[2025-11-28 02:25:20] VERSION_ID="7"
[2025-11-28 02:25:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:25:20] ANSI_COLOR="0;31"
[2025-11-28 02:25:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:25:20] HOME_URL="https://www.centos.org/"
[2025-11-28 02:25:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:25:20] 
[2025-11-28 02:25:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:25:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:25:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:25:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:25:20] 
[2025-11-28 02:25:20] 2025-11-28 07:24:21,356 | INFO     | ***************************************
[2025-11-28 02:25:20] 2025-11-28 07:24:21,859 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 02:25:20] 2025-11-28 07:24:21,872 | INFO     | sufficient remaining disk space (101095309312 B)
[2025-11-28 02:25:20] 2025-11-28 07:24:21,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:25:20] 2025-11-28 07:24:21,873 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:25:20] 2025-11-28 07:24:21,873 | INFO     | update_server=False
[2025-11-28 02:25:20] 2025-11-28 07:24:21,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:25:20] 2025-11-28 07:24:21,873 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:25:20] 2025-11-28 07:24:21,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:25:20] 2025-11-28 07:24:22,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:25:20] 2025-11-28 07:24:22,127 | INFO     | aborting loop
[2025-11-28 02:25:20] 2025-11-28 07:24:22,478 | INFO     | all data control threads have been joined
[2025-11-28 02:25:20] 2025-11-28 07:24:22,868 | INFO     | all payload control threads have been joined
[2025-11-28 02:25:20] 2025-11-28 07:24:22,878 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:22,879 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,031 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,118 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,132 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:25:20] 2025-11-28 07:24:23,287 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,290 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,424 | INFO     | [job] validate thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,483 | INFO     | [data] control thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:23,493 | INFO     | all job control threads have been joined
[2025-11-28 02:25:20] 2025-11-28 07:24:23,874 | INFO     | [payload] control thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:24,248 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:24,383 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:24,498 | INFO     | [job] control thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:25,289 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:25,879 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:32,511 | INFO     | job.realtimelogging is not enabled
[2025-11-28 02:25:20] 2025-11-28 07:24:33,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:25:20] 2025-11-28 07:24:52,612 | INFO     | PID=11711 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 02:25:20] 2025-11-28 07:24:52,612 | INFO     | .. there are 4 such processes running
[2025-11-28 02:25:20] 2025-11-28 07:24:52,612 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:25:20] 2025-11-28 07:24:52,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:25:20] 2025-11-28 07:24:52,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:25:20] 2025-11-28 07:25:14,519 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:25:20] 2025-11-28 07:25:15,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140026478622528)>', '<ExcThread(monitor, started 140026050500352)>']
[2025-11-28 02:25:20] 2025-11-28 07:25:15,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:25:20] 2025-11-28 07:25:15,724 | INFO     | [monitor] control thread has ended
[2025-11-28 02:25:20] 2025-11-28 07:25:20,549 | INFO     | all workflow threads have been joined
[2025-11-28 02:25:20] 2025-11-28 07:25:20,549 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:25:20] 2025-11-28 07:25:20,550 | INFO     | traces error code: 0
[2025-11-28 02:25:20] 2025-11-28 07:25:20,552 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:25:20] 2025-11-28 07:25:20,663 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:25:20] 2025-11-28 07:25:20,665 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:25:20] 2025-11-28 07:25:20,667 [wrapper] pilotpid: 11711
[2025-11-28 02:25:20] 2025-11-28 07:25:20,670 [wrapper] Pilot exit status: 0
[2025-11-28 02:25:20] 2025-11-28 07:25:20,679 [wrapper] pandaids: 6898271178 6898271178
[2025-11-28 02:25:20] 2025-11-28 07:25:20,718 [wrapper] cleanup supervisor_pilot 35724 11715
[2025-11-28 02:25:20] 2025-11-28 07:25:20,720 [wrapper] Test setup, not cleaning
[2025-11-28 02:25:20] 2025-11-28 07:25:20,723 [wrapper] apfmon messages muted
[2025-11-28 02:25:20] 2025-11-28 07:25:20,725 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:25:20] 2025-11-28 07:25:20,727 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:25:20]  *** Error codes and diagnostics ***
[2025-11-28 02:25:20]     "exeErrorCode": 0,
[2025-11-28 02:25:20]     "exeErrorDiag": "",
[2025-11-28 02:25:20]     "pilotErrorCode": 0,
[2025-11-28 02:25:20]     "pilotErrorDiag": "",
[2025-11-28 02:25:20]  *** Listing of results directory ***
[2025-11-28 02:25:20] total 1724640
[2025-11-28 02:25:20] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 09:19 pilot3.tar.gz
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 09:47 queuedata.json
[2025-11-28 02:25:20] -rwx------ 1 boincer umatlas     36292 Nov 26 09:49 runpilot2-wrapper.sh
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas       100 Nov 27 06:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:25:20] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 06:29 run_atlas
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas       105 Nov 27 06:29 job.xml
[2025-11-28 02:25:20] -rw-r--r-- 3 boincer umatlas 410056657 Nov 27 06:29 EVNT.47483658._002524.pool.root.1
[2025-11-28 02:25:20] -rw-r--r-- 3 boincer umatlas 410056657 Nov 27 06:29 ATLAS.root_0
[2025-11-28 02:25:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:29 start_atlas.sh
[2025-11-28 02:25:20] drwxrwx--x 2 boincer umatlas      4096 Nov 27 06:29 shared
[2025-11-28 02:25:20] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 06:29 input.tar.gz
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas         0 Nov 27 06:29 boinc_lockfile
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 09:10 pandaJob.out
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas        57 Nov 27 09:10 setup.sh.local
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas    991588 Nov 27 09:10 agis_schedconf.cvmfs.json
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas       533 Nov 28 02:15 boinc_task_state.xml
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas      6038 Nov 28 02:21 init_data.xml
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas 920562378 Nov 28 02:23 HITS.47556161._005070.pool.root.1
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas      1059 Nov 28 02:24 memory_monitor_summary.json
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas   1516240 Nov 28 02:24 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas   2207993 Nov 28 02:24 log.47556161._005070.job.log.tgz.1
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas      8633 Nov 28 02:24 heartbeat.json
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas        96 Nov 28 02:24 pilot_heartbeat.json
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 02:25 boinc_mmap_file
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas        29 Nov 28 02:25 wrapper_checkpoint.txt
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas      4894 Nov 28 02:25 pilotlog.txt
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas   8503410 Nov 28 02:25 log.47556161._005070.job.log.1
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas       353 Nov 28 02:25 output.list
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas       620 Nov 28 02:25 runtime_log
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas  10731520 Nov 28 02:25 result.tar.gz
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas      9418 Nov 28 02:25 runtime_log.err
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas       790 Nov 28 02:25 7Y6MDm30Vi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm81MKDmrW46en.diag
[2025-11-28 02:25:20] -rw-r--r-- 1 boincer umatlas     23402 Nov 28 02:25 stderr.txt
[2025-11-28 02:25:20] HITS file was successfully produced:
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas 920562378 Nov 28 02:23 shared/HITS.pool.root.1
[2025-11-28 02:25:20]  *** Contents of shared directory: ***
[2025-11-28 02:25:20] total 1310520
[2025-11-28 02:25:20] -rw-r--r-- 3 boincer umatlas 410056657 Nov 27 06:29 ATLAS.root_0
[2025-11-28 02:25:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:29 start_atlas.sh
[2025-11-28 02:25:20] -rw-r--r-- 2 boincer umatlas    590106 Nov 27 06:29 input.tar.gz
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas 920562378 Nov 28 02:23 HITS.pool.root.1
[2025-11-28 02:25:20] -rw------- 1 boincer umatlas  10731520 Nov 28 02:25 result.tar.gz
02:25:22 (45594): run_atlas exited; CPU time 479299.274362
02:25:22 (45594): called boinc_finish(0)

</stderr_txt>
]]>

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