Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:40:25 (8782): wrapper (7.7.26015): starting
06:40:25 (8782): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:40:25] Arguments: --nthreads 8
[2025-11-27 06:40:25] Threads: 8
[2025-11-27 06:40:25] Checking for CVMFS
[2025-11-27 06:40:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:40:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:40:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:40:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:40:29] 2.11.2.0 11495 119093 135376 153362 0 82 11520976 18432000 1635 130560 0 85135062 99.975 5044951 25305 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 06:40:29] CVMFS is ok
[2025-11-27 06:40:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:40:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:40:29] Further information can be found at the LHC@home message board.
[2025-11-27 06:40:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:40:29] Checking for apptainer binary...
[2025-11-27 06:40:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:40:29] Running /usr/bin/apptainer --version
[2025-11-27 06:40:29] apptainer version 1.3.2-1.el7
[2025-11-27 06:40:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:40:29] c-206-31.aglt2.org
[2025-11-27 06:40:29] apptainer works
[2025-11-27 06:40:29] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:40:29] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:40:29] Starting ATLAS job with PandaID=6898271455
[2025-11-27 06:40:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:48:17 (2067): wrapper (7.7.26015): starting
10:48:17 (2067): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 10:48:17] Arguments: --nthreads 8
[2025-11-27 10:48:17] Threads: 8
[2025-11-27 10:48:17] This job has been restarted, cleaning up previous attempt
[2025-11-27 10:48:17] Checking for CVMFS
[2025-11-27 10:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:48:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:48:17] 2.11.2.0 11495 119341 132288 153371 1 57 11575697 18432001 1 130560 0 85514655 99.975 5054147 25318 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 10:48:17] CVMFS is ok
[2025-11-27 10:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:48:17] Further information can be found at the LHC@home message board.
[2025-11-27 10:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:48:17] Checking for apptainer binary...
[2025-11-27 10:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:48:17] Running /usr/bin/apptainer --version
[2025-11-27 10:48:17] apptainer version 1.3.2-1.el7
[2025-11-27 10:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:48:18] c-206-31.aglt2.org
[2025-11-27 10:48:18] apptainer works
[2025-11-27 10:48:18] Set ATHENA_PROC_NUMBER=8
[2025-11-27 10:48:18] Set ATHENA_CORE_NUMBER=8
[2025-11-27 10:48:18] Starting ATLAS job with PandaID=6898271455
[2025-11-27 10:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:06:31]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:06:31] 2025-11-28 11:05:57,096 | INFO     | time since job start (69446s) is within the limit (172800.0s)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,415 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 06:06:31] 2025-11-28 11:05:57,420 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2455.75
[2025-11-28 06:06:31] 2025-11-28 11:05:57,423 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898271455/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,423 | INFO     | extracted standard info from prmon json
[2025-11-28 06:06:31] 2025-11-28 11:05:57,423 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:06:31] 2025-11-28 11:05:57,424 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:06:31] 2025-11-28 11:05:57,438 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:06:31] 2025-11-28 11:05:57,439 | INFO     | sum of square deviations: 456988130959.0581
[2025-11-28 06:06:31] 2025-11-28 11:05:57,462 | INFO     | sum of deviations: 2219715498765.292
[2025-11-28 06:06:31] 2025-11-28 11:05:57,462 | INFO     | mean x: 1764293218.2073815
[2025-11-28 06:06:31] 2025-11-28 11:05:57,462 | INFO     | mean y: 2866995.5369068542
[2025-11-28 06:06:31] 2025-11-28 11:05:57,462 | INFO     | intersect: -8566784458.216665
[2025-11-28 06:06:31] 2025-11-28 11:05:57,463 | INFO     | chi2: 5.7972308445191265
[2025-11-28 06:06:31] 2025-11-28 11:05:57,464 | INFO     | sum of square deviations: 450991231479.0449
[2025-11-28 06:06:31] 2025-11-28 11:05:57,488 | INFO     | sum of deviations: 2556622170067.8325
[2025-11-28 06:06:31] 2025-11-28 11:05:57,488 | INFO     | mean x: 1764293065.710503
[2025-11-28 06:06:31] 2025-11-28 11:05:57,489 | INFO     | mean y: 2875560.862312445
[2025-11-28 06:06:31] 2025-11-28 11:05:57,489 | INFO     | intersect: -9998717488.96176
[2025-11-28 06:06:31] 2025-11-28 11:05:57,490 | INFO     | chi2: 3.22325607325141
[2025-11-28 06:06:31] 2025-11-28 11:05:57,491 | INFO     | current chi2=3.22325607325141 (change=44.400073764549646 %)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,492 | INFO     | sum of square deviations: 445047030661.5096
[2025-11-28 06:06:31] 2025-11-28 11:05:57,533 | INFO     | sum of deviations: 2708424815086.123
[2025-11-28 06:06:31] 2025-11-28 11:05:57,533 | INFO     | mean x: 1764292913.2136524
[2025-11-28 06:06:31] 2025-11-28 11:05:57,534 | INFO     | mean y: 2879453.070035461
[2025-11-28 06:06:31] 2025-11-28 11:05:57,534 | INFO     | intersect: -10734086256.207561
[2025-11-28 06:06:31] 2025-11-28 11:05:57,535 | INFO     | chi2: 2.579099521675296
[2025-11-28 06:06:31] 2025-11-28 11:05:57,536 | INFO     | current chi2=2.579099521675296 (change=19.984653311343358 %)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,536 | INFO     | right removable region: 1127
[2025-11-28 06:06:31] 2025-11-28 11:05:57,537 | INFO     | sum of square deviations: 450990740429.0444
[2025-11-28 06:06:31] 2025-11-28 11:05:57,578 | INFO     | sum of deviations: 1935843763016.058
[2025-11-28 06:06:31] 2025-11-28 11:05:57,578 | INFO     | mean x: 1764293370.710503
[2025-11-28 06:06:31] 2025-11-28 11:05:57,579 | INFO     | mean y: 2874204.2806707853
[2025-11-28 06:06:31] 2025-11-28 11:05:57,579 | INFO     | intersect: -7570222118.209922
[2025-11-28 06:06:31] 2025-11-28 11:05:57,580 | INFO     | chi2: 3.7755550391587382
[2025-11-28 06:06:31] 2025-11-28 11:05:57,581 | INFO     | current chi2=3.7755550391587382 (change=34.87312925052382 %)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,582 | INFO     | sum of square deviations: 445046256023.78485
[2025-11-28 06:06:31] 2025-11-28 11:05:57,622 | INFO     | sum of deviations: 1842400045367.8318
[2025-11-28 06:06:31] 2025-11-28 11:05:57,623 | INFO     | mean x: 1764293523.2109928
[2025-11-28 06:06:31] 2025-11-28 11:05:57,623 | INFO     | mean y: 2876601.1267730496
[2025-11-28 06:06:31] 2025-11-28 11:05:57,623 | INFO     | intersect: -7300936032.300673
[2025-11-28 06:06:31] 2025-11-28 11:05:57,624 | INFO     | chi2: 3.678262376715852
[2025-11-28 06:06:31] 2025-11-28 11:05:57,625 | INFO     | current chi2=3.678262376715852 (change=2.5769101876095233 %)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,625 | INFO     | left removable region: 20
[2025-11-28 06:06:31] 2025-11-28 11:05:57,626 | INFO     | sum of square deviations: 420650328254.06464
[2025-11-28 06:06:31] 2025-11-28 11:05:57,666 | INFO     | sum of deviations: 2209071025873.1763
[2025-11-28 06:06:31] 2025-11-28 11:05:57,666 | INFO     | mean x: 1764293492.7181573
[2025-11-28 06:06:31] 2025-11-28 11:05:57,666 | INFO     | mean y: 2893552.5582655827
[2025-11-28 06:06:31] 2025-11-28 11:05:57,666 | INFO     | intersect: -9262402048.367273
[2025-11-28 06:06:31] 2025-11-28 11:05:57,668 | INFO     | chi2: 0.30871485051592945
[2025-11-28 06:06:31] 2025-11-28 11:05:57,668 | INFO     | current memory leak: 5.25 B/s (using 1107 data points, chi2=0.31)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,669 | INFO     | could have reported an average CPU frequency of 2585 MHz (41 samples)
[2025-11-28 06:06:31] 2025-11-28 11:05:57,669 | INFO     | ..............................
[2025-11-28 06:06:31] 2025-11-28 11:05:57,670 | INFO     | . Timing measurements:
[2025-11-28 06:06:31] 2025-11-28 11:05:57,670 | INFO     | . get job = 0 s
[2025-11-28 06:06:31] 2025-11-28 11:05:57,670 | INFO     | . initial setup = 2 s
[2025-11-28 06:06:31] 2025-11-28 11:05:57,670 | INFO     | . payload setup = 7 s
[2025-11-28 06:06:31] 2025-11-28 11:05:57,670 | INFO     | . stage-in = 0 s
[2025-11-28 06:06:31] 2025-11-28 11:05:57,670 | INFO     | . payload execution = 69410 s
[2025-11-28 06:06:31] 2025-11-28 11:05:57,671 | INFO     | . stage-out = 4 s
[2025-11-28 06:06:31] 2025-11-28 11:05:57,671 | INFO     | . log creation = 0 s
[2025-11-28 06:06:31] 2025-11-28 11:05:57,671 | INFO     | ..............................
[2025-11-28 06:06:31] 2025-11-28 11:05:58,013 | INFO     | 
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | job summary report
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | --------------------------------------------------
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | PanDA job id: 6898271455
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | task id: 47556161
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | errors: (none)
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | pilot state: finished 
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | transexitcode: 0
[2025-11-28 06:06:31] 2025-11-28 11:05:58,014 | INFO     | exeerrorcode: 0
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | exeerrordiag: 
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | exitcode: 0
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | exitmsg: OK
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | cpuconsumptiontime: 542486 s
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | nevents: 1000
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | neventsw: 0
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | pid: 639
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | pgrp: 639
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | corecount: 8
[2025-11-28 06:06:31] 2025-11-28 11:05:58,015 | INFO     | event service: False
[2025-11-28 06:06:31] 2025-11-28 11:05:58,016 | INFO     | sizes: {0: 2284144, 1: 2284343, 5: 2284605, 11: 2284661, 69421: 2340861, 69426: 2349855, 69427: 2350039, 69431: 2350381}
[2025-11-28 06:06:31] 2025-11-28 11:05:58,016 | INFO     | --------------------------------------------------
[2025-11-28 06:06:31] 2025-11-28 11:05:58,016 | INFO     | 
[2025-11-28 06:06:31] 2025-11-28 11:05:58,016 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-28 06:06:31] 2025-11-28 11:05:58,034 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:06:31] 2025-11-28 11:05:58,036 | INFO     | job 6898271455 has completed (purged errors)
[2025-11-28 06:06:31] 2025-11-28 11:05:58,037 | INFO     | overall cleanup function is called
[2025-11-28 06:06:31] 2025-11-28 11:05:59,049 | INFO     | --- collectZombieJob: --- 10, [639]
[2025-11-28 06:06:31] 2025-11-28 11:05:59,049 | INFO     | zombie collector waiting for pid 639
[2025-11-28 06:06:31] 2025-11-28 11:05:59,049 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:06:31] 2025-11-28 11:05:59,050 | INFO     | collected zombie processes
[2025-11-28 06:06:31] 2025-11-28 11:05:59,050 | INFO     | will attempt to kill all subprocesses of pid=639
[2025-11-28 06:06:31] 2025-11-28 11:05:59,187 | INFO     | process IDs to be killed: [639] (in reverse order)
[2025-11-28 06:06:31] 2025-11-28 11:05:59,247 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:06:31] 2025-11-28 11:05:59,247 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:06:31] 2025-11-28 11:05:59,252 | INFO     | did not find any defunct processes belonging to 639
[2025-11-28 06:06:31] 2025-11-28 11:05:59,255 | INFO     | did not find any defunct processes belonging to 639
[2025-11-28 06:06:31] 2025-11-28 11:05:59,256 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:06:31] 2025-11-28 11:05:59,257 | INFO     | ready for new job
[2025-11-28 06:06:31] 2025-11-28 11:05:59,257 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:06:31] 2025-11-28 11:05:59,260 | INFO     | ***************************************
[2025-11-28 06:06:31] 2025-11-28 11:05:59,260 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:06:31] 2025-11-28 11:05:59,260 | INFO     | ***************************************
[2025-11-28 06:06:31] 2025-11-28 11:05:59,261 | INFO     | 
[2025-11-28 06:06:31] 2025-11-28 11:05:59,261 | INFO     | architecture information:
[2025-11-28 06:06:31] 2025-11-28 11:05:59,262 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:06:31] 2025-11-28 11:05:59,271 | INFO     | cat /etc/os-release:
[2025-11-28 06:06:31] NAME="CentOS Linux"
[2025-11-28 06:06:31] VERSION="7 (Core)"
[2025-11-28 06:06:31] ID="centos"
[2025-11-28 06:06:31] ID_LIKE="rhel fedora"
[2025-11-28 06:06:31] VERSION_ID="7"
[2025-11-28 06:06:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:06:31] ANSI_COLOR="0;31"
[2025-11-28 06:06:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:06:31] HOME_URL="https://www.centos.org/"
[2025-11-28 06:06:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:06:31] 
[2025-11-28 06:06:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:06:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:06:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:06:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:06:31] 
[2025-11-28 06:06:31] 2025-11-28 11:05:59,272 | INFO     | ***************************************
[2025-11-28 06:06:31] 2025-11-28 11:05:59,778 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-28 06:06:31] 2025-11-28 11:05:59,794 | INFO     | sufficient remaining disk space (24721227776 B)
[2025-11-28 06:06:31] 2025-11-28 11:05:59,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:06:31] 2025-11-28 11:05:59,795 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:06:31] 2025-11-28 11:05:59,795 | INFO     | update_server=False
[2025-11-28 06:06:31] 2025-11-28 11:05:59,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:06:31] 2025-11-28 11:05:59,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:06:31] 2025-11-28 11:05:59,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:06:31] 2025-11-28 11:06:00,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:06:31] 2025-11-28 11:06:00,241 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 06:06:31] 2025-11-28 11:06:00,241 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 06:06:31] 2025-11-28 11:06:00,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:06:31] 2025-11-28 11:06:00,249 | INFO     | will abort loop
[2025-11-28 06:06:31] 2025-11-28 11:06:00,379 | INFO     | all job control threads have been joined
[2025-11-28 06:06:31] 2025-11-28 11:06:00,405 | INFO     | all payload control threads have been joined
[2025-11-28 06:06:31] 2025-11-28 11:06:00,508 | INFO     | all data control threads have been joined
[2025-11-28 06:06:31] 2025-11-28 11:06:00,797 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:00,797 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,160 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,255 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,385 | INFO     | [job] control thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,409 | INFO     | [payload] control thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,513 | INFO     | [data] control thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,521 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,523 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:01,803 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:02,151 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:02,194 | INFO     | [job] validate thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:02,221 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:02,401 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:04,053 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:06:31] 2025-11-28 11:06:26,287 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:06:31] 2025-11-28 11:06:26,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401544628032)>', '<ExcThread(monitor, started 140400509568768)>']
[2025-11-28 06:06:31] 2025-11-28 11:06:30,325 | INFO     | PID=13131 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 06:06:31] 2025-11-28 11:06:30,325 | INFO     | .. there are 3 such processes running
[2025-11-28 06:06:31] 2025-11-28 11:06:30,326 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:06:31] 2025-11-28 11:06:30,326 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:06:31] 2025-11-28 11:06:30,326 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:06:31] 2025-11-28 11:06:30,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:06:31] 2025-11-28 11:06:30,326 | INFO     | [monitor] control thread has ended
[2025-11-28 06:06:31] 2025-11-28 11:06:31,616 | INFO     | all workflow threads have been joined
[2025-11-28 06:06:31] 2025-11-28 11:06:31,616 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:06:31] 2025-11-28 11:06:31,617 | INFO     | traces error code: 0
[2025-11-28 06:06:31] 2025-11-28 11:06:31,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:06:31] 2025-11-28 11:06:31,730 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:06:31] 2025-11-28 11:06:31,733 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:06:31] 2025-11-28 11:06:31,735 [wrapper] pilotpid: 13131
[2025-11-28 06:06:31] 2025-11-28 11:06:31,738 [wrapper] Pilot exit status: 0
[2025-11-28 06:06:31] 2025-11-28 11:06:31,747 [wrapper] pandaids: 6898271455 6898271455
[2025-11-28 06:06:31] 2025-11-28 11:06:31,786 [wrapper] cleanup supervisor_pilot  4557 13132
[2025-11-28 06:06:31] 2025-11-28 11:06:31,790 [wrapper] Test setup, not cleaning
[2025-11-28 06:06:31] 2025-11-28 11:06:31,792 [wrapper] apfmon messages muted
[2025-11-28 06:06:31] 2025-11-28 11:06:31,795 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:06:31] 2025-11-28 11:06:31,797 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:06:31]  *** Error codes and diagnostics ***
[2025-11-28 06:06:31]     "exeErrorCode": 0,
[2025-11-28 06:06:31]     "exeErrorDiag": "",
[2025-11-28 06:06:31]     "pilotErrorCode": 0,
[2025-11-28 06:06:31]     "pilotErrorDiag": "",
[2025-11-28 06:06:31]  *** Listing of results directory ***
[2025-11-28 06:06:31] total 1727788
[2025-11-28 06:06:31] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 10:08 queuedata.json
[2025-11-28 06:06:31] -rwx------ 1 boincer umatlas     36292 Nov 26 10:08 runpilot2-wrapper.sh
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas       100 Nov 27 06:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:06:31] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 06:40 run_atlas
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas       105 Nov 27 06:40 job.xml
[2025-11-28 06:06:31] -rw-r--r-- 3 boincer umatlas 410424069 Nov 27 06:40 EVNT.47483658._002537.pool.root.1
[2025-11-28 06:06:31] -rw-r--r-- 3 boincer umatlas 410424069 Nov 27 06:40 ATLAS.root_0
[2025-11-28 06:06:31] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:40 start_atlas.sh
[2025-11-28 06:06:31] drwxrwx--x 2 boincer umatlas      4096 Nov 27 06:40 shared
[2025-11-28 06:06:31] -rw-r--r-- 2 boincer umatlas    590103 Nov 27 06:40 input.tar.gz
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas         0 Nov 27 06:40 boinc_lockfile
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 10:48 pandaJob.out
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas        57 Nov 27 10:48 setup.sh.local
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas    991572 Nov 27 10:48 agis_schedconf.cvmfs.json
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas       533 Nov 28 05:51 boinc_task_state.xml
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 06:00 init_data.xml
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas 920694021 Nov 28 06:05 HITS.47556161._005193.pool.root.1
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas        96 Nov 28 06:05 pilot_heartbeat.json
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas      1062 Nov 28 06:05 memory_monitor_summary.json
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas   1516240 Nov 28 06:05 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas   2300617 Nov 28 06:05 log.47556161._005193.job.log.tgz.1
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas      8662 Nov 28 06:05 heartbeat.json
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 06:06 boinc_mmap_file
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas        29 Nov 28 06:06 wrapper_checkpoint.txt
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas      5007 Nov 28 06:06 pilotlog.txt
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas   9590927 Nov 28 06:06 log.47556161._005193.job.log.1
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas       353 Nov 28 06:06 output.list
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas       620 Nov 28 06:06 runtime_log
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas  11909120 Nov 28 06:06 result.tar.gz
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas      9428 Nov 28 06:06 runtime_log.err
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas       793 Nov 28 06:06 ls0MDmAJWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd3MKDmnmJFTn.diag
[2025-11-28 06:06:31] -rw-r--r-- 1 boincer umatlas     23403 Nov 28 06:06 stderr.txt
[2025-11-28 06:06:31] HITS file was successfully produced:
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas 920694021 Nov 28 06:05 shared/HITS.pool.root.1
[2025-11-28 06:06:31]  *** Contents of shared directory: ***
[2025-11-28 06:06:31] total 1312160
[2025-11-28 06:06:31] -rw-r--r-- 3 boincer umatlas 410424069 Nov 27 06:40 ATLAS.root_0
[2025-11-28 06:06:31] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:40 start_atlas.sh
[2025-11-28 06:06:31] -rw-r--r-- 2 boincer umatlas    590103 Nov 27 06:40 input.tar.gz
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas 920694021 Nov 28 06:05 HITS.pool.root.1
[2025-11-28 06:06:31] -rw------- 1 boincer umatlas  11909120 Nov 28 06:06 result.tar.gz
06:06:33 (2067): run_atlas exited; CPU time 541972.414442
06:06:33 (2067): called boinc_finish(0)

</stderr_txt>
]]>

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