Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:45:58 (4241): wrapper (7.7.26015): starting
06:45:58 (4241): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:45:58] Arguments: --nthreads 8
[2025-11-27 06:45:58] Threads: 8
[2025-11-27 06:45:58] Checking for CVMFS
[2025-11-27 06:45:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:45:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:45:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:45:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:45:58] 2.11.2.0 11495 119098 133060 153362 3 90 11522391 18432001 1653 130560 0 85210179 99.975 5045064 25305 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 06:45:58] CVMFS is ok
[2025-11-27 06:45:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:45:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:45:58] Further information can be found at the LHC@home message board.
[2025-11-27 06:45:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:45:58] Checking for apptainer binary...
[2025-11-27 06:45:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:45:58] Running /usr/bin/apptainer --version
[2025-11-27 06:45:58] apptainer version 1.3.2-1.el7
[2025-11-27 06:45:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:45:59] c-206-31.aglt2.org
[2025-11-27 06:45:59] apptainer works
[2025-11-27 06:45:59] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:45:59] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:45:59] Starting ATLAS job with PandaID=6898271027
[2025-11-27 06:45:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:48:17 (2068): wrapper (7.7.26015): starting
10:48:17 (2068): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 10:48:17] Arguments: --nthreads 8
[2025-11-27 10:48:17] Threads: 8
[2025-11-27 10:48:17] This job has been restarted, cleaning up previous attempt
[2025-11-27 10:48:17] Checking for CVMFS
[2025-11-27 10:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:48:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:48:17] 2.11.2.0 11495 119341 132288 153371 1 57 11575697 18432001 1 130560 0 85514655 99.975 5054147 25318 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 10:48:17] CVMFS is ok
[2025-11-27 10:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:48:17] Further information can be found at the LHC@home message board.
[2025-11-27 10:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:48:17] Checking for apptainer binary...
[2025-11-27 10:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:48:17] Running /usr/bin/apptainer --version
[2025-11-27 10:48:17] apptainer version 1.3.2-1.el7
[2025-11-27 10:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:48:18] c-206-31.aglt2.org
[2025-11-27 10:48:18] apptainer works
[2025-11-27 10:48:18] Set ATHENA_PROC_NUMBER=8
[2025-11-27 10:48:18] Set ATHENA_CORE_NUMBER=8
[2025-11-27 10:48:18] Starting ATLAS job with PandaID=6898271027
[2025-11-27 10:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:27:46]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:27:46] 2025-11-28 11:27:12,841 | INFO     | monitor loop #5053: job 0:6898271027 is in state 'finished'
[2025-11-28 06:27:46] 2025-11-28 11:27:12,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:27:46] 2025-11-28 11:27:13,370 | INFO     | time since job start (70722s) is within the limit (172800.0s)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,674 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 06:27:46] 2025-11-28 11:27:14,678 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2117.2916666666665
[2025-11-28 06:27:46] 2025-11-28 11:27:14,681 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898271027/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,682 | INFO     | extracted standard info from prmon json
[2025-11-28 06:27:46] 2025-11-28 11:27:14,682 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:27:46] 2025-11-28 11:27:14,682 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:27:46] 2025-11-28 11:27:14,700 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:27:46] 2025-11-28 11:27:14,701 | INFO     | sum of square deviations: 482755891899.1747
[2025-11-28 06:27:46] 2025-11-28 11:27:14,727 | INFO     | sum of deviations: 2492907722746.203
[2025-11-28 06:27:46] 2025-11-28 11:27:14,727 | INFO     | mean x: 1764293858.7169974
[2025-11-28 06:27:46] 2025-11-28 11:27:14,727 | INFO     | mean y: 2864751.2079378776
[2025-11-28 06:27:46] 2025-11-28 11:27:14,728 | INFO     | intersect: -9107789016.862253
[2025-11-28 06:27:46] 2025-11-28 11:27:14,729 | INFO     | chi2: 4.752840493195157
[2025-11-28 06:27:46] 2025-11-28 11:27:14,730 | INFO     | sum of square deviations: 476535126384.09393
[2025-11-28 06:27:46] 2025-11-28 11:27:14,756 | INFO     | sum of deviations: 2804135114964.9424
[2025-11-28 06:27:46] 2025-11-28 11:27:14,756 | INFO     | mean x: 1764293706.220104
[2025-11-28 06:27:46] 2025-11-28 11:27:14,756 | INFO     | mean y: 2872375.8388214903
[2025-11-28 06:27:46] 2025-11-28 11:27:14,756 | INFO     | intersect: -10378981260.56201
[2025-11-28 06:27:46] 2025-11-28 11:27:14,757 | INFO     | chi2: 2.4867112206010167
[2025-11-28 06:27:46] 2025-11-28 11:27:14,757 | INFO     | current chi2=2.4867112206010167 (change=47.679472429984834 %)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,758 | INFO     | sum of square deviations: 470368036293.9899
[2025-11-28 06:27:46] 2025-11-28 11:27:14,784 | INFO     | sum of deviations: 2810849787340.658
[2025-11-28 06:27:46] 2025-11-28 11:27:14,784 | INFO     | mean x: 1764293553.7232375
[2025-11-28 06:27:46] 2025-11-28 11:27:14,784 | INFO     | mean y: 2872539.436031332
[2025-11-28 06:27:46] 2025-11-28 11:27:14,784 | INFO     | intersect: -10540284685.622252
[2025-11-28 06:27:46] 2025-11-28 11:27:14,785 | INFO     | chi2: 2.4143217818022937
[2025-11-28 06:27:46] 2025-11-28 11:27:14,785 | INFO     | current chi2=2.4143217818022937 (change=2.9110512792565855 %)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,785 | INFO     | right removable region: 1148
[2025-11-28 06:27:46] 2025-11-28 11:27:14,787 | INFO     | sum of square deviations: 476534619474.0938
[2025-11-28 06:27:46] 2025-11-28 11:27:14,812 | INFO     | sum of deviations: 2203769970680.7837
[2025-11-28 06:27:46] 2025-11-28 11:27:14,813 | INFO     | mean x: 1764294011.220104
[2025-11-28 06:27:46] 2025-11-28 11:27:14,813 | INFO     | mean y: 2871829.6386481803
[2025-11-28 06:27:46] 2025-11-28 11:27:14,813 | INFO     | intersect: -8156237713.482766
[2025-11-28 06:27:46] 2025-11-28 11:27:14,814 | INFO     | chi2: 2.72899418140709
[2025-11-28 06:27:46] 2025-11-28 11:27:14,814 | INFO     | current chi2=2.72899418140709 (change=42.581826903000284 %)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,815 | INFO     | sum of square deviations: 470367304173.76135
[2025-11-28 06:27:46] 2025-11-28 11:27:14,840 | INFO     | sum of deviations: 2107844340212.8135
[2025-11-28 06:27:46] 2025-11-28 11:27:14,840 | INFO     | mean x: 1764294163.7197564
[2025-11-28 06:27:46] 2025-11-28 11:27:14,841 | INFO     | mean y: 2874201.325500435
[2025-11-28 06:27:46] 2025-11-28 11:27:14,841 | INFO     | intersect: -7903409748.40537
[2025-11-28 06:27:46] 2025-11-28 11:27:14,842 | INFO     | chi2: 2.6336035007385625
[2025-11-28 06:27:46] 2025-11-28 11:27:14,842 | INFO     | current chi2=2.6336035007385625 (change=3.4954519624275364 %)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,842 | INFO     | left removable region: 20
[2025-11-28 06:27:46] 2025-11-28 11:27:14,843 | INFO     | sum of square deviations: 445045815900.44617
[2025-11-28 06:27:46] 2025-11-28 11:27:14,868 | INFO     | sum of deviations: 2284216848483.2393
[2025-11-28 06:27:46] 2025-11-28 11:27:14,868 | INFO     | mean x: 1764294133.2278368
[2025-11-28 06:27:46] 2025-11-28 11:27:14,868 | INFO     | mean y: 2885537.909574468
[2025-11-28 06:27:46] 2025-11-28 11:27:14,868 | INFO     | intersect: -9052430208.954226
[2025-11-28 06:27:46] 2025-11-28 11:27:14,870 | INFO     | chi2: 0.22162658099463642
[2025-11-28 06:27:46] 2025-11-28 11:27:14,870 | INFO     | current memory leak: 5.13 B/s (using 1128 data points, chi2=0.22)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,870 | INFO     | could have reported an average CPU frequency of 2571 MHz (42 samples)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | ..............................
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . Timing measurements:
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . get job = 0 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . initial setup = 2 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . payload setup = 7 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . stage-in = 0 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . payload execution = 70687 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . stage-out = 3 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,871 | INFO     | . log creation = 0 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,872 | INFO     | ..............................
[2025-11-28 06:27:46] 2025-11-28 11:27:14,952 | INFO     | 
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | job summary report
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | --------------------------------------------------
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | PanDA job id: 6898271027
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | task id: 47556161
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | errors: (none)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | pilot state: finished 
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | transexitcode: 0
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | exeerrorcode: 0
[2025-11-28 06:27:46] 2025-11-28 11:27:14,953 | INFO     | exeerrordiag: 
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | exitcode: 0
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | exitmsg: OK
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | cpuconsumptiontime: 544375 s
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | nevents: 1000
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | neventsw: 0
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | pid: 638
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | pgrp: 638
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | corecount: 8
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | event service: False
[2025-11-28 06:27:46] 2025-11-28 11:27:14,954 | INFO     | sizes: {0: 2284144, 1: 2284343, 5: 2284605, 11: 2284661, 70698: 2341429, 70702: 2350423, 70704: 2350607, 70708: 2350853}
[2025-11-28 06:27:46] 2025-11-28 11:27:14,955 | INFO     | --------------------------------------------------
[2025-11-28 06:27:46] 2025-11-28 11:27:14,955 | INFO     | 
[2025-11-28 06:27:46] 2025-11-28 11:27:14,955 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 06:27:46] 2025-11-28 11:27:14,971 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,972 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,973 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,974 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,974 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:27:46] 2025-11-28 11:27:14,974 | INFO     | job 6898271027 has completed (purged errors)
[2025-11-28 06:27:46] 2025-11-28 11:27:14,974 | INFO     | overall cleanup function is called
[2025-11-28 06:27:46] 2025-11-28 11:27:15,987 | INFO     | --- collectZombieJob: --- 10, [638]
[2025-11-28 06:27:46] 2025-11-28 11:27:15,987 | INFO     | zombie collector waiting for pid 638
[2025-11-28 06:27:46] 2025-11-28 11:27:15,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:27:46] 2025-11-28 11:27:15,987 | INFO     | collected zombie processes
[2025-11-28 06:27:46] 2025-11-28 11:27:15,987 | INFO     | will attempt to kill all subprocesses of pid=638
[2025-11-28 06:27:46] 2025-11-28 11:27:16,102 | INFO     | process IDs to be killed: [638] (in reverse order)
[2025-11-28 06:27:46] 2025-11-28 11:27:16,140 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:27:46] 2025-11-28 11:27:16,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:27:46] 2025-11-28 11:27:16,143 | INFO     | did not find any defunct processes belonging to 638
[2025-11-28 06:27:46] 2025-11-28 11:27:16,146 | INFO     | did not find any defunct processes belonging to 638
[2025-11-28 06:27:46] 2025-11-28 11:27:16,147 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:27:46] 2025-11-28 11:27:16,147 | INFO     | ready for new job
[2025-11-28 06:27:46] 2025-11-28 11:27:16,147 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:27:46] 2025-11-28 11:27:16,151 | INFO     | ***************************************
[2025-11-28 06:27:46] 2025-11-28 11:27:16,151 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:27:46] 2025-11-28 11:27:16,151 | INFO     | ***************************************
[2025-11-28 06:27:46] 2025-11-28 11:27:16,152 | INFO     | 
[2025-11-28 06:27:46] 2025-11-28 11:27:16,152 | INFO     | architecture information:
[2025-11-28 06:27:46] 2025-11-28 11:27:16,153 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:27:46] 2025-11-28 11:27:16,165 | INFO     | cat /etc/os-release:
[2025-11-28 06:27:46] NAME="CentOS Linux"
[2025-11-28 06:27:46] VERSION="7 (Core)"
[2025-11-28 06:27:46] ID="centos"
[2025-11-28 06:27:46] ID_LIKE="rhel fedora"
[2025-11-28 06:27:46] VERSION_ID="7"
[2025-11-28 06:27:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:27:46] ANSI_COLOR="0;31"
[2025-11-28 06:27:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:27:46] HOME_URL="https://www.centos.org/"
[2025-11-28 06:27:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:27:46] 
[2025-11-28 06:27:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:27:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:27:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:27:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:27:46] 
[2025-11-28 06:27:46] 2025-11-28 11:27:16,165 | INFO     | ***************************************
[2025-11-28 06:27:46] 2025-11-28 11:27:16,668 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 06:27:46] 2025-11-28 11:27:16,679 | INFO     | sufficient remaining disk space (25607274496 B)
[2025-11-28 06:27:46] 2025-11-28 11:27:16,679 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:27:46] 2025-11-28 11:27:16,680 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:27:46] 2025-11-28 11:27:16,680 | INFO     | update_server=False
[2025-11-28 06:27:46] 2025-11-28 11:27:16,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:27:46] 2025-11-28 11:27:16,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:27:46] 2025-11-28 11:27:16,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:27:46] 2025-11-28 11:27:16,681 | INFO     | aborting loop
[2025-11-28 06:27:46] 2025-11-28 11:27:16,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:27:46] 2025-11-28 11:27:17,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:27:46] 2025-11-28 11:27:17,222 | INFO     | all payload control threads have been joined
[2025-11-28 06:27:46] 2025-11-28 11:27:17,418 | INFO     | all data control threads have been joined
[2025-11-28 06:27:46] 2025-11-28 11:27:17,685 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:17,686 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:17,686 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:17,686 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:18,224 | INFO     | [payload] control thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:18,234 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:18,237 | INFO     | all job control threads have been joined
[2025-11-28 06:27:46] 2025-11-28 11:27:18,423 | INFO     | [data] control thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:18,552 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:18,725 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:18,789 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:18,794 | INFO     | [job] validate thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:19,119 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:19,129 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:19,215 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:19,242 | INFO     | [job] control thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:20,892 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:27:46] 2025-11-28 11:27:28,507 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:27:46] 2025-11-28 11:27:29,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140522995443520)>', '<ExcThread(monitor, started 140522337335040)>']
[2025-11-28 06:27:46] 2025-11-28 11:27:34,222 | INFO     | all workflow threads have been joined
[2025-11-28 06:27:46] 2025-11-28 11:27:34,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:27:46] 2025-11-28 11:27:34,305 | INFO     | traces error code: 0
[2025-11-28 06:27:46] 2025-11-28 11:27:34,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:27:46] 2025-11-28 11:27:46,581 | INFO     | PID=13196 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 06:27:46] 2025-11-28 11:27:46,581 | INFO     | .. there are 3 such processes running
[2025-11-28 06:27:46] 2025-11-28 11:27:46,581 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:27:46] 2025-11-28 11:27:46,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:27:46] 2025-11-28 11:27:46,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:27:46] 2025-11-28 11:27:46,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:27:46] 2025-11-28 11:27:46,581 | INFO     | [monitor] control thread has ended
[2025-11-28 06:27:46] 2025-11-28 11:27:46,666 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:27:46] 2025-11-28 11:27:46,668 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:27:46] 2025-11-28 11:27:46,671 [wrapper] pilotpid: 13196
[2025-11-28 06:27:46] 2025-11-28 11:27:46,673 [wrapper] Pilot exit status: 0
[2025-11-28 06:27:46] 2025-11-28 11:27:46,680 [wrapper] pandaids: 6898271027 6898271027
[2025-11-28 06:27:46] 2025-11-28 11:27:46,708 [wrapper] cleanup supervisor_pilot 21617 13197
[2025-11-28 06:27:46] 2025-11-28 11:27:46,710 [wrapper] Test setup, not cleaning
[2025-11-28 06:27:46] 2025-11-28 11:27:46,713 [wrapper] apfmon messages muted
[2025-11-28 06:27:46] 2025-11-28 11:27:46,715 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:27:46] 2025-11-28 11:27:46,718 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:27:46]  *** Error codes and diagnostics ***
[2025-11-28 06:27:46]     "exeErrorCode": 0,
[2025-11-28 06:27:46]     "exeErrorDiag": "",
[2025-11-28 06:27:46]     "pilotErrorCode": 0,
[2025-11-28 06:27:46]     "pilotErrorDiag": "",
[2025-11-28 06:27:46]  *** Listing of results directory ***
[2025-11-28 06:27:46] total 1737856
[2025-11-28 06:27:46] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 09:19 pilot3.tar.gz
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 09:32 queuedata.json
[2025-11-28 06:27:46] -rwx------ 1 boincer umatlas     36292 Nov 26 09:35 runpilot2-wrapper.sh
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas       100 Nov 27 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:27:46] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 06:45 run_atlas
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas       105 Nov 27 06:45 job.xml
[2025-11-28 06:27:46] -rw-r--r-- 3 boincer umatlas 411738845 Nov 27 06:45 EVNT.47483658._002517.pool.root.1
[2025-11-28 06:27:46] -rw-r--r-- 3 boincer umatlas 411738845 Nov 27 06:45 ATLAS.root_0
[2025-11-28 06:27:46] drwxrwx--x 2 boincer umatlas      4096 Nov 27 06:45 shared
[2025-11-28 06:27:46] -rw-r--r-- 2 boincer umatlas    590108 Nov 27 06:45 input.tar.gz
[2025-11-28 06:27:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:45 start_atlas.sh
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas         0 Nov 27 06:45 boinc_lockfile
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 10:48 pandaJob.out
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas        57 Nov 27 10:48 setup.sh.local
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas    991572 Nov 27 10:48 agis_schedconf.cvmfs.json
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 06:19 init_data.xml
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas       533 Nov 28 06:20 boinc_task_state.xml
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas 928015764 Nov 28 06:26 HITS.47556161._004998.pool.root.1
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas        96 Nov 28 06:26 pilot_heartbeat.json
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas      1064 Nov 28 06:27 memory_monitor_summary.json
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas   1516240 Nov 28 06:27 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas   2313633 Nov 28 06:27 log.47556161._004998.job.log.tgz.1
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas      8661 Nov 28 06:27 heartbeat.json
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 06:27 boinc_mmap_file
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas        29 Nov 28 06:27 wrapper_checkpoint.txt
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas       820 Nov 28 06:27 pilotlog.txt
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas   9764671 Nov 28 06:27 log.47556161._004998.job.log.1
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas       353 Nov 28 06:27 output.list
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas       620 Nov 28 06:27 runtime_log
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas  12093440 Nov 28 06:27 result.tar.gz
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas      9428 Nov 28 06:27 runtime_log.err
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas       793 Nov 28 06:27 b6EODm1mVi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu0MKDmV2k8sm.diag
[2025-11-28 06:27:46] -rw-r--r-- 1 boincer umatlas     23447 Nov 28 06:27 stderr.txt
[2025-11-28 06:27:46] HITS file was successfully produced:
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas 928015764 Nov 28 06:26 shared/HITS.pool.root.1
[2025-11-28 06:27:46]  *** Contents of shared directory: ***
[2025-11-28 06:27:46] total 1320772
[2025-11-28 06:27:46] -rw-r--r-- 3 boincer umatlas 411738845 Nov 27 06:45 ATLAS.root_0
[2025-11-28 06:27:46] -rw-r--r-- 2 boincer umatlas    590108 Nov 27 06:45 input.tar.gz
[2025-11-28 06:27:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:45 start_atlas.sh
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas 928015764 Nov 28 06:26 HITS.pool.root.1
[2025-11-28 06:27:46] -rw------- 1 boincer umatlas  12093440 Nov 28 06:27 result.tar.gz
06:27:48 (2068): run_atlas exited; CPU time 543039.796717
06:27:48 (2068): called boinc_finish(0)

</stderr_txt>
]]>

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