Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:56:31 (3338900): wrapper (7.7.26015): starting
06:56:31 (3338900): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 06:56:31] Arguments: --nthreads 9
[2025-11-27 06:56:31] Threads: 9
[2025-11-27 06:56:31] Checking for CVMFS
[2025-11-27 06:56:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:56:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:56:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:56:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:56:33] 2.13.3.0 7385 31395 258992 153362 2 497 26938005 32503808 73802 16776704 0 458429061 99.666 388889265 48664 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 06:56:33] CVMFS is ok
[2025-11-27 06:56:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:56:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:56:33] Further information can be found at the LHC@home message board.
[2025-11-27 06:56:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:56:33] Checking for apptainer binary...
[2025-11-27 06:56:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:56:33] Running /usr/bin/apptainer --version
[2025-11-27 06:56:34] apptainer version 1.4.4-1.el9
[2025-11-27 06:56:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:56:34] c8-7-1.aglt2.org
[2025-11-27 06:56:34] apptainer works
[2025-11-27 06:56:34] Set ATHENA_PROC_NUMBER=9
[2025-11-27 06:56:34] Set ATHENA_CORE_NUMBER=9
[2025-11-27 06:56:34] Starting ATLAS job with PandaID=6898271475
[2025-11-27 06:56:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:45:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:45:31] 2025-11-27 19:44:43,356 | INFO     | monitor loop #1554: job 0:6898271475 is in state 'finished'
[2025-11-27 14:45:31] 2025-11-27 19:44:43,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:45:31] 2025-11-27 19:44:45,840 | INFO     | PID=3346835 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:45:31] 2025-11-27 19:44:45,840 | INFO     | .. there are 115 such processes running
[2025-11-27 14:45:31] 2025-11-27 19:44:45,884 | INFO     | monitor loop #1555: job 0:6898271475 is in state 'finished'
[2025-11-27 14:45:31] 2025-11-27 19:44:45,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:45:31] 2025-11-27 19:44:46,841 | INFO     | time since job start (28036s) is within the limit (172800.0s)
[2025-11-27 14:45:31] 2025-11-27 19:44:48,428 | INFO     | monitor loop #1556: job 0:6898271475 is in state 'finished'
[2025-11-27 14:45:31] 2025-11-27 19:44:48,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:45:31] 2025-11-27 19:44:48,848 | INFO     | time since job start (28038s) is within the limit (172800.0s)
[2025-11-27 14:45:31] 2025-11-27 19:44:50,855 | INFO     | time since job start (28040s) is within the limit (172800.0s)
[2025-11-27 14:45:31] 2025-11-27 19:44:50,963 | INFO     | monitor loop #1557: job 0:6898271475 is in state 'finished'
[2025-11-27 14:45:31] 2025-11-27 19:44:50,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:45:31] 2025-11-27 19:44:52,865 | INFO     | time since job start (28042s) is within the limit (172800.0s)
[2025-11-27 14:45:31] 2025-11-27 19:44:53,469 | INFO     | monitor loop #1558: job 0:6898271475 is in state 'finished'
[2025-11-27 14:45:31] 2025-11-27 19:44:53,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:45:31] 2025-11-27 19:44:54,885 | INFO     | time since job start (28044s) is within the limit (172800.0s)
[2025-11-27 14:45:31] 2025-11-27 19:44:55,487 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:45:31] 2025-11-27 19:44:55,495 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.137218750001
[2025-11-27 14:45:31] 2025-11-27 19:44:55,516 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6898271475/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:45:31] 2025-11-27 19:44:55,516 | INFO     | extracted standard info from prmon json
[2025-11-27 14:45:31] 2025-11-27 19:44:55,516 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:45:31] 2025-11-27 19:44:55,516 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:45:31] 2025-11-27 19:44:55,523 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:45:31] 2025-11-27 19:44:55,523 | INFO     | sum of square deviations: 29789847833.45851
[2025-11-27 14:45:31] 2025-11-27 19:44:55,530 | INFO     | sum of deviations: -51361254807.23151
[2025-11-27 14:45:31] 2025-11-27 19:44:55,530 | INFO     | mean x: 1764258706.6812227
[2025-11-27 14:45:31] 2025-11-27 19:44:55,530 | INFO     | mean y: 2910431.9847161574
[2025-11-27 14:45:31] 2025-11-27 19:44:55,530 | INFO     | intersect: 3044703108.681679
[2025-11-27 14:45:31] 2025-11-27 19:44:55,530 | INFO     | chi2: 22.869609623025916
[2025-11-27 14:45:31] 2025-11-27 19:44:55,531 | INFO     | sum of square deviations: 28824962178.905045
[2025-11-27 14:45:31] 2025-11-27 19:44:55,537 | INFO     | sum of deviations: 113622851493.99321
[2025-11-27 14:45:31] 2025-11-27 19:44:55,537 | INFO     | mean x: 1764258554.1942606
[2025-11-27 14:45:31] 2025-11-27 19:44:55,537 | INFO     | mean y: 2936503.9205298014
[2025-11-27 14:45:31] 2025-11-27 19:44:55,537 | INFO     | intersect: -6951455541.975171
[2025-11-27 14:45:31] 2025-11-27 19:44:55,537 | INFO     | chi2: 18.750598969052316
[2025-11-27 14:45:31] 2025-11-27 19:44:55,537 | INFO     | current chi2=18.750598969052316 (change=18.010848116211122 %)
[2025-11-27 14:45:31] 2025-11-27 19:44:55,537 | INFO     | right removable region: 452
[2025-11-27 14:45:31] 2025-11-27 19:44:55,538 | INFO     | sum of square deviations: 28824632168.905052
[2025-11-27 14:45:31] 2025-11-27 19:44:55,544 | INFO     | sum of deviations: -237498859647.8099
[2025-11-27 14:45:31] 2025-11-27 19:44:55,544 | INFO     | mean x: 1764258859.1942606
[2025-11-27 14:45:31] 2025-11-27 19:44:55,544 | INFO     | mean y: 2939835.6114790286
[2025-11-27 14:45:31] 2025-11-27 19:44:55,544 | INFO     | intersect: 14539446831.672813
[2025-11-27 14:45:31] 2025-11-27 19:44:55,545 | INFO     | chi2: 18.87095112265245
[2025-11-27 14:45:31] 2025-11-27 19:44:55,545 | INFO     | current chi2=18.87095112265245 (change=17.484594474002208 %)
[2025-11-27 14:45:31] 2025-11-27 19:44:55,545 | INFO     | left removable region: 10
[2025-11-27 14:45:31] 2025-11-27 19:44:55,545 | INFO     | sum of square deviations: 26775447413.212746
[2025-11-27 14:45:31] 2025-11-27 19:44:55,547 | INFO     | sum of deviations: -136793502707.02731
[2025-11-27 14:45:31] 2025-11-27 19:44:55,547 | INFO     | mean x: 1764258828.719457
[2025-11-27 14:45:31] 2025-11-27 19:44:55,547 | INFO     | mean y: 2989258.3868778283
[2025-11-27 14:45:31] 2025-11-27 19:44:55,547 | INFO     | intersect: 9016438824.24696
[2025-11-27 14:45:31] 2025-11-27 19:44:55,547 | INFO     | chi2: 12.203501900684149
[2025-11-27 14:45:31] 2025-11-27 19:44:55,548 | INFO     | current memory leak: -5.11 B/s (using 442 data points, chi2=12.20)
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | could have reported an average CPU frequency of 3797 MHz (19 samples)
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | ..............................
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . Timing measurements:
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . get job = 0 s
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . initial setup = 3 s
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . payload setup = 34 s
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . stage-in = 0 s
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . payload execution = 27910 s
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . stage-out = 4 s
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | . log creation = 0 s
[2025-11-27 14:45:31] 2025-11-27 19:44:55,552 | INFO     | ..............................
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | 
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | job summary report
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | --------------------------------------------------
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | PanDA job id: 6898271475
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | task id: 47556173
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | errors: (none)
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | pilot state: finished 
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | transexitcode: 0
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | exeerrorcode: 0
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | exeerrordiag: 
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | exitcode: 0
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | exitmsg: OK
[2025-11-27 14:45:31] 2025-11-27 19:44:56,173 | INFO     | cpuconsumptiontime: 133921 s
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | nevents: 1000
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | neventsw: 0
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | pid: 3365492
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | pgrp: 3365492
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | corecount: 9
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | event service: False
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | sizes: {0: 2284315, 11: 2284315, 21: 2284343, 24: 2284633, 32: 2284661, 27949: 2321895, 27950: 2322022, 27955: 2331072, 27957: 2331128, 27991: 2331374}
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | --------------------------------------------------
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | 
[2025-11-27 14:45:31] 2025-11-27 19:44:56,174 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 14:45:31] 2025-11-27 19:44:56,216 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,216 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | job 6898271475 has completed (purged errors)
[2025-11-27 14:45:31] 2025-11-27 19:44:56,217 | INFO     | overall cleanup function is called
[2025-11-27 14:45:31] 2025-11-27 19:44:57,240 | INFO     | --- collectZombieJob: --- 10, [3365492]
[2025-11-27 14:45:31] 2025-11-27 19:44:57,240 | INFO     | zombie collector waiting for pid 3365492
[2025-11-27 14:45:31] 2025-11-27 19:44:57,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:45:31] 2025-11-27 19:44:57,240 | INFO     | collected zombie processes
[2025-11-27 14:45:31] 2025-11-27 19:44:57,240 | INFO     | will attempt to kill all subprocesses of pid=3365492
[2025-11-27 14:45:31] 2025-11-27 19:44:58,527 | INFO     | process IDs to be killed: [3365492] (in reverse order)
[2025-11-27 14:45:31] 2025-11-27 19:44:58,886 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:45:31] 2025-11-27 19:44:58,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:45:31] 2025-11-27 19:44:58,926 | INFO     | did not find any defunct processes belonging to 3365492
[2025-11-27 14:45:31] 2025-11-27 19:44:58,963 | INFO     | did not find any defunct processes belonging to 3365492
[2025-11-27 14:45:31] 2025-11-27 19:44:58,971 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:45:31] 2025-11-27 19:44:58,971 | INFO     | ready for new job
[2025-11-27 14:45:31] 2025-11-27 19:44:58,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:45:31] 2025-11-27 19:44:58,973 | INFO     | ***************************************
[2025-11-27 14:45:31] 2025-11-27 19:44:58,973 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:45:31] 2025-11-27 19:44:58,973 | INFO     | ***************************************
[2025-11-27 14:45:31] 2025-11-27 19:44:58,973 | INFO     | 
[2025-11-27 14:45:31] 2025-11-27 19:44:58,982 | INFO     | architecture information:
[2025-11-27 14:45:31] 2025-11-27 19:44:58,982 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:45:31] 2025-11-27 19:44:59,067 | INFO     | cat /etc/os-release:
[2025-11-27 14:45:31] NAME="CentOS Linux"
[2025-11-27 14:45:31] VERSION="7 (Core)"
[2025-11-27 14:45:31] ID="centos"
[2025-11-27 14:45:31] ID_LIKE="rhel fedora"
[2025-11-27 14:45:31] VERSION_ID="7"
[2025-11-27 14:45:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:45:31] ANSI_COLOR="0;31"
[2025-11-27 14:45:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:45:31] HOME_URL="https://www.centos.org/"
[2025-11-27 14:45:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:45:31] 
[2025-11-27 14:45:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:45:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:45:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:45:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:45:31] 
[2025-11-27 14:45:31] 2025-11-27 19:44:59,067 | INFO     | ***************************************
[2025-11-27 14:45:31] 2025-11-27 19:44:59,571 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 14:45:31] 2025-11-27 19:44:59,642 | INFO     | sufficient remaining disk space (80933289984 B)
[2025-11-27 14:45:31] 2025-11-27 19:44:59,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:45:31] 2025-11-27 19:44:59,642 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:45:31] 2025-11-27 19:44:59,643 | INFO     | update_server=False
[2025-11-27 14:45:31] 2025-11-27 19:44:59,643 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:45:31] 2025-11-27 19:44:59,643 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:45:31] 2025-11-27 19:44:59,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:45:31] 2025-11-27 19:44:59,647 | INFO     | aborting loop
[2025-11-27 14:45:31] 2025-11-27 19:45:00,146 | INFO     | all data control threads have been joined
[2025-11-27 14:45:31] 2025-11-27 19:45:00,335 | INFO     | all job control threads have been joined
[2025-11-27 14:45:31] 2025-11-27 19:45:00,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:45:31] 2025-11-27 19:45:00,650 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:00,653 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:00,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:45:31] 2025-11-27 19:45:00,894 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:00,894 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,076 | INFO     | all payload control threads have been joined
[2025-11-27 14:45:31] 2025-11-27 19:45:01,159 | INFO     | [data] control thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,171 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,228 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,228 | INFO     | [job] validate thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,229 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,341 | INFO     | [job] control thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,730 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,732 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:01,915 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:02,081 | INFO     | [payload] control thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:02,369 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:03,664 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:45:31] 2025-11-27 19:45:19,649 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:45:31] 2025-11-27 19:45:20,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140368710121280)>', '<ExcThread(monitor, started 140368364422912)>']
[2025-11-27 14:45:31] 2025-11-27 19:45:25,277 | INFO     | all workflow threads have been joined
[2025-11-27 14:45:31] 2025-11-27 19:45:25,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:45:31] 2025-11-27 19:45:25,277 | INFO     | traces error code: 0
[2025-11-27 14:45:31] 2025-11-27 19:45:25,277 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:45:31] 2025-11-27 19:45:29,833 | INFO     | PID=3346835 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:45:31] 2025-11-27 19:45:29,833 | INFO     | .. there are 115 such processes running
[2025-11-27 14:45:31] 2025-11-27 19:45:29,834 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:45:31] 2025-11-27 19:45:29,834 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:45:31] 2025-11-27 19:45:29,834 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:45:31] 2025-11-27 19:45:29,834 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:45:31] 2025-11-27 19:45:29,834 | INFO     | [monitor] control thread has ended
[2025-11-27 14:45:31] 2025-11-27 19:45:30,431 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:45:31] 2025-11-27 19:45:30,461 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:45:31] 2025-11-27 19:45:30,517 [wrapper] pilotpid: 3346835
[2025-11-27 14:45:31] 2025-11-27 19:45:30,534 [wrapper] Pilot exit status: 0
[2025-11-27 14:45:31] 2025-11-27 19:45:30,636 [wrapper] pandaids: 6898271475
[2025-11-27 14:45:31] 2025-11-27 19:45:31,172 [wrapper] cleanup supervisor_pilot 3523294 3346836
[2025-11-27 14:45:31] 2025-11-27 19:45:31,192 [wrapper] Test setup, not cleaning
[2025-11-27 14:45:31] 2025-11-27 19:45:31,200 [wrapper] apfmon messages muted
[2025-11-27 14:45:31] 2025-11-27 19:45:31,221 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:45:31] 2025-11-27 19:45:31,240 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:45:31]  *** Error codes and diagnostics ***
[2025-11-27 14:45:31]     "exeErrorCode": 0,
[2025-11-27 14:45:31]     "exeErrorDiag": "",
[2025-11-27 14:45:31]     "pilotErrorCode": 0,
[2025-11-27 14:45:31]     "pilotErrorDiag": "",
[2025-11-27 14:45:31]  *** Listing of results directory ***
[2025-11-27 14:45:31] total 1309316
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-27 14:45:31] -rwx------. 1 boincer umatlas     36292 Nov 26 10:14 runpilot2-wrapper.sh
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:14 queuedata.json
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas       100 Nov 27 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:45:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 06:56 run_atlas
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas       105 Nov 27 06:56 job.xml
[2025-11-27 14:45:31] -rw-r--r--. 2 boincer umatlas 407847544 Nov 27 06:56 EVNT.47483658._003190.pool.root.1
[2025-11-27 14:45:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:56 start_atlas.sh
[2025-11-27 14:45:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 06:56 shared
[2025-11-27 14:45:31] -rw-r--r--. 2 boincer umatlas    590097 Nov 27 06:56 input.tar.gz
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas         0 Nov 27 06:56 boinc_lockfile
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 06:56 pandaJob.out
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas        57 Nov 27 06:56 setup.sh.local
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas    991572 Nov 27 06:57 agis_schedconf.cvmfs.json
[2025-11-27 14:45:31] drwx------. 5 boincer umatlas      4096 Nov 27 06:57 pilot3
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:21 boinc_task_state.xml
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas      7172 Nov 27 14:37 init_data.xml
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas 918581119 Nov 27 14:43 HITS.47556173._001466.pool.root.1
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas      1052 Nov 27 14:44 memory_monitor_summary.json
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas   1810481 Nov 27 14:44 log.47556173._001466.job.log.tgz.1
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas        95 Nov 27 14:44 pilot_heartbeat.json
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas      8579 Nov 27 14:44 heartbeat.json
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:45 boinc_mmap_file
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:45 wrapper_checkpoint.txt
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas       824 Nov 27 14:45 pilotlog.txt
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas   3386828 Nov 27 14:45 log.47556173._001466.job.log.1
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas       353 Nov 27 14:45 output.list
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:45 runtime_log
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas   5212160 Nov 27 14:45 result.tar.gz
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 14:45 runtime_log.err
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas       658 Nov 27 14:45 mXmNDmDPWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm93MKDmgLIs7n.diag
[2025-11-27 14:45:31] -rw-r--r--. 1 boincer umatlas     21888 Nov 27 14:45 stderr.txt
[2025-11-27 14:45:31] HITS file was successfully produced:
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas 918581119 Nov 27 14:43 shared/HITS.pool.root.1
[2025-11-27 14:45:31]  *** Contents of shared directory: ***
[2025-11-27 14:45:31] total 1301040
[2025-11-27 14:45:31] -rw-r--r--. 2 boincer umatlas 407847544 Nov 27 06:56 ATLAS.root_0
[2025-11-27 14:45:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:56 start_atlas.sh
[2025-11-27 14:45:31] -rw-r--r--. 2 boincer umatlas    590097 Nov 27 06:56 input.tar.gz
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas 918581119 Nov 27 14:43 HITS.pool.root.1
[2025-11-27 14:45:31] -rw-------. 1 boincer umatlas   5212160 Nov 27 14:45 result.tar.gz
14:45:33 (3338900): run_atlas exited; CPU time 134589.755361
14:45:33 (3338900): called boinc_finish(0)

</stderr_txt>
]]>

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