Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:29:31 (1900724): wrapper (7.7.26015): starting
08:29:31 (1900724): wrapper: running run_atlas (--nthreads 10)
[2025-11-27 08:29:31] Arguments: --nthreads 10
[2025-11-27 08:29:31] Threads: 10
[2025-11-27 08:29:31] Checking for CVMFS
[2025-11-27 08:29:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:29:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:29:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:29:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:29:32] 2.13.3.0 12500 31552 249352 153364 1 560 27728057 32503808 48007 16776704 0 215405764 99.532 249018156 37124 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 08:29:32] CVMFS is ok
[2025-11-27 08:29:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 08:29:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 08:29:32] Further information can be found at the LHC@home message board.
[2025-11-27 08:29:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:29:32] Checking for apptainer binary...
[2025-11-27 08:29:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:29:32] Running /usr/bin/apptainer --version
[2025-11-27 08:29:32] apptainer version 1.4.4-1.el9
[2025-11-27 08:29:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:29:32] c7-7-36.aglt2.org
[2025-11-27 08:29:32] apptainer works
[2025-11-27 08:29:32] Set ATHENA_PROC_NUMBER=10
[2025-11-27 08:29:32] Set ATHENA_CORE_NUMBER=10
[2025-11-27 08:29:32] Starting ATLAS job with PandaID=6898271405
[2025-11-27 08:29:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:27:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:27:29] 2025-11-28 00:34:18,924 | INFO     | monitor loop #2243: job 0:6898271405 is in state 'finished'
[2025-11-27 20:27:29] 2025-11-28 00:34:18,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,031 | INFO     | time since job start (39876s) is within the limit (172800.0s)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,070 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:27:29] 2025-11-28 00:34:19,076 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3203.478489583333
[2025-11-27 20:27:29] 2025-11-28 00:34:19,131 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898271405/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,132 | INFO     | extracted standard info from prmon json
[2025-11-27 20:27:29] 2025-11-28 00:34:19,132 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:27:29] 2025-11-28 00:34:19,132 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:27:29] 2025-11-28 00:34:19,223 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:27:29] 2025-11-28 00:34:19,266 | INFO     | sum of square deviations: 86340297129.71219
[2025-11-27 20:27:29] 2025-11-28 00:34:19,305 | INFO     | sum of deviations: 630503227288.6123
[2025-11-27 20:27:29] 2025-11-28 00:34:19,305 | INFO     | mean x: 1764270097.0444105
[2025-11-27 20:27:29] 2025-11-28 00:34:19,305 | INFO     | mean y: 3201642.5650842264
[2025-11-27 20:27:29] 2025-11-28 00:34:19,305 | INFO     | intersect: -12880446282.85412
[2025-11-27 20:27:29] 2025-11-28 00:34:19,306 | INFO     | chi2: 5.976240496849561
[2025-11-27 20:27:29] 2025-11-28 00:34:19,306 | INFO     | sum of square deviations: 84372319394.21655
[2025-11-27 20:27:29] 2025-11-28 00:34:19,315 | INFO     | sum of deviations: 898833040433.9933
[2025-11-27 20:27:29] 2025-11-28 00:34:19,315 | INFO     | mean x: 1764269944.5524693
[2025-11-27 20:27:29] 2025-11-28 00:34:19,315 | INFO     | mean y: 3222435.4413580247
[2025-11-27 20:27:29] 2025-11-28 00:34:19,315 | INFO     | intersect: -18791853127.18575
[2025-11-27 20:27:29] 2025-11-28 00:34:19,316 | INFO     | chi2: 2.243596720231293
[2025-11-27 20:27:29] 2025-11-28 00:34:19,316 | INFO     | current chi2=2.243596720231293 (change=62.45805834932465 %)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,317 | INFO     | sum of square deviations: 82434403070.87183
[2025-11-27 20:27:29] 2025-11-28 00:34:19,326 | INFO     | sum of deviations: 950748138004.5428
[2025-11-27 20:27:29] 2025-11-28 00:34:19,326 | INFO     | mean x: 1764269792.0575428
[2025-11-27 20:27:29] 2025-11-28 00:34:19,326 | INFO     | mean y: 3226502.4447900467
[2025-11-27 20:27:29] 2025-11-28 00:34:19,326 | INFO     | intersect: -20344785459.19057
[2025-11-27 20:27:29] 2025-11-28 00:34:19,327 | INFO     | chi2: 1.8897599994637446
[2025-11-27 20:27:29] 2025-11-28 00:34:19,327 | INFO     | current chi2=1.8897599994637446 (change=15.770959084441488 %)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,327 | INFO     | right removable region: 642
[2025-11-27 20:27:29] 2025-11-28 00:34:19,328 | INFO     | sum of square deviations: 84371982676.41971
[2025-11-27 20:27:29] 2025-11-28 00:34:19,337 | INFO     | sum of deviations: 467387970952.7158
[2025-11-27 20:27:29] 2025-11-28 00:34:19,337 | INFO     | mean x: 1764270249.5493827
[2025-11-27 20:27:29] 2025-11-28 00:34:19,338 | INFO     | mean y: 3214247.0401234566
[2025-11-27 20:27:29] 2025-11-28 00:34:19,338 | INFO     | intersect: -9770156793.813543
[2025-11-27 20:27:29] 2025-11-28 00:34:19,338 | INFO     | chi2: 4.2460128217104005
[2025-11-27 20:27:29] 2025-11-28 00:34:19,338 | INFO     | current chi2=4.2460128217104005 (change=28.951774548752994 %)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,339 | INFO     | sum of square deviations: 82433927276.40758
[2025-11-27 20:27:29] 2025-11-28 00:34:19,348 | INFO     | sum of deviations: 425330127565.0277
[2025-11-27 20:27:29] 2025-11-28 00:34:19,348 | INFO     | mean x: 1764270402.0497668
[2025-11-27 20:27:29] 2025-11-28 00:34:19,348 | INFO     | mean y: 3217555.1866251943
[2025-11-27 20:27:29] 2025-11-28 00:34:19,348 | INFO     | intersect: -9099798398.995533
[2025-11-27 20:27:29] 2025-11-28 00:34:19,348 | INFO     | chi2: 4.203802590298675
[2025-11-27 20:27:29] 2025-11-28 00:34:19,349 | INFO     | current chi2=4.203802590298675 (change=0.9941145536796061 %)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,349 | INFO     | left removable region: 20
[2025-11-27 20:27:29] 2025-11-28 00:34:19,349 | INFO     | sum of square deviations: 74618329320.92764
[2025-11-27 20:27:29] 2025-11-28 00:34:19,357 | INFO     | sum of deviations: 676260265463.772
[2025-11-27 20:27:29] 2025-11-28 00:34:19,358 | INFO     | mean x: 1764270371.5643086
[2025-11-27 20:27:29] 2025-11-28 00:34:19,358 | INFO     | mean y: 3248242.9807073954
[2025-11-27 20:27:29] 2025-11-28 00:34:19,358 | INFO     | intersect: -15986200471.322329
[2025-11-27 20:27:29] 2025-11-28 00:34:19,358 | INFO     | chi2: 0.06254727048924626
[2025-11-27 20:27:29] 2025-11-28 00:34:19,359 | INFO     | current memory leak: 9.06 B/s (using 622 data points, chi2=0.06)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,359 | INFO     | could have reported an average CPU frequency of 3241 MHz (25 samples)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,359 | INFO     | ..............................
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . Timing measurements:
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . get job = 0 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . initial setup = 2 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . payload setup = 6 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . stage-in = 0 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . payload execution = 39816 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . stage-out = 7 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | . log creation = 1 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,360 | INFO     | ..............................
[2025-11-27 20:27:29] 2025-11-28 00:34:19,439 | INFO     | 
[2025-11-27 20:27:29] 2025-11-28 00:34:19,439 | INFO     | job summary report
[2025-11-27 20:27:29] 2025-11-28 00:34:19,439 | INFO     | --------------------------------------------------
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | PanDA job id: 6898271405
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | task id: 47556161
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | errors: (none)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | pilot state: finished 
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | transexitcode: 0
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | exeerrorcode: 0
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | exeerrordiag: 
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | exitcode: 0
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | exitmsg: OK
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | cpuconsumptiontime: 191291 s
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | nevents: 1000
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | neventsw: 0
[2025-11-27 20:27:29] 2025-11-28 00:34:19,440 | INFO     | pid: 1912281
[2025-11-27 20:27:29] 2025-11-28 00:34:19,441 | INFO     | pgrp: 1912281
[2025-11-27 20:27:29] 2025-11-28 00:34:19,441 | INFO     | corecount: 10
[2025-11-27 20:27:29] 2025-11-28 00:34:19,441 | INFO     | event service: False
[2025-11-27 20:27:29] 2025-11-28 00:34:19,441 | INFO     | sizes: {0: 2284088, 1: 2284343, 6: 2284605, 12: 2284633, 39827: 2326330, 39836: 2335324, 39838: 2335508, 39860: 2335818}
[2025-11-27 20:27:29] 2025-11-28 00:34:19,441 | INFO     | --------------------------------------------------
[2025-11-27 20:27:29] 2025-11-28 00:34:19,441 | INFO     | 
[2025-11-27 20:27:29] 2025-11-28 00:34:19,441 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:27:29] 2025-11-28 00:34:19,553 | INFO     | job 6898271405 has completed (purged errors)
[2025-11-27 20:27:29] 2025-11-28 00:34:19,553 | INFO     | overall cleanup function is called
[2025-11-27 20:27:29] 2025-11-28 00:34:20,600 | INFO     | --- collectZombieJob: --- 10, [1912281]
[2025-11-27 20:27:29] 2025-11-28 00:34:20,601 | INFO     | zombie collector waiting for pid 1912281
[2025-11-27 20:27:29] 2025-11-28 00:34:20,601 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:27:29] 2025-11-28 00:34:20,601 | INFO     | collected zombie processes
[2025-11-27 20:27:29] 2025-11-28 00:34:20,601 | INFO     | will attempt to kill all subprocesses of pid=1912281
[2025-11-27 20:27:29] 2025-11-28 00:34:22,059 | INFO     | process IDs to be killed: [1912281] (in reverse order)
[2025-11-27 20:27:29] 2025-11-28 00:34:22,305 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:27:29] 2025-11-28 00:34:22,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:27:29] 2025-11-28 00:34:22,341 | INFO     | did not find any defunct processes belonging to 1912281
[2025-11-27 20:27:29] 2025-11-28 00:34:22,371 | INFO     | did not find any defunct processes belonging to 1912281
[2025-11-27 20:27:29] 2025-11-28 00:34:22,372 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:27:29] 2025-11-28 00:34:22,372 | INFO     | ready for new job
[2025-11-27 20:27:29] 2025-11-28 00:34:22,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:27:29] 2025-11-28 00:34:22,375 | INFO     | ***************************************
[2025-11-27 20:27:29] 2025-11-28 00:34:22,375 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:27:29] 2025-11-28 00:34:22,375 | INFO     | ***************************************
[2025-11-27 20:27:29] 2025-11-28 00:34:22,375 | INFO     | 
[2025-11-27 20:27:29] 2025-11-28 00:34:22,380 | INFO     | architecture information:
[2025-11-27 20:27:29] 2025-11-28 00:34:22,381 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:27:29] 2025-11-28 00:34:22,435 | INFO     | cat /etc/os-release:
[2025-11-27 20:27:29] NAME="CentOS Linux"
[2025-11-27 20:27:29] VERSION="7 (Core)"
[2025-11-27 20:27:29] ID="centos"
[2025-11-27 20:27:29] ID_LIKE="rhel fedora"
[2025-11-27 20:27:29] VERSION_ID="7"
[2025-11-27 20:27:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:27:29] ANSI_COLOR="0;31"
[2025-11-27 20:27:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:27:29] HOME_URL="https://www.centos.org/"
[2025-11-27 20:27:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:27:29] 
[2025-11-27 20:27:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:27:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:27:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:27:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:27:29] 
[2025-11-27 20:27:29] 2025-11-28 00:34:22,436 | INFO     | ***************************************
[2025-11-27 20:27:29] 2025-11-28 00:34:22,939 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 20:27:29] 2025-11-28 00:34:23,032 | INFO     | sufficient remaining disk space (87264591872 B)
[2025-11-27 20:27:29] 2025-11-28 00:34:23,032 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:27:29] 2025-11-28 00:34:23,032 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:27:29] 2025-11-28 00:34:23,032 | INFO     | update_server=False
[2025-11-27 20:27:29] 2025-11-28 00:34:23,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:27:29] 2025-11-28 00:34:23,032 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:27:29] 2025-11-28 00:34:23,032 | INFO     | aborting loop
[2025-11-27 20:27:29] 2025-11-28 00:34:23,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:27:29] 2025-11-28 00:34:23,626 | INFO     | all payload control threads have been joined
[2025-11-27 20:27:29] 2025-11-28 00:34:23,763 | INFO     | all data control threads have been joined
[2025-11-27 20:27:29] 2025-11-28 00:34:24,038 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:24,039 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:24,243 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:24,343 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:24,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:24,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:27:29] 2025-11-28 00:34:24,566 | INFO     | all job control threads have been joined
[2025-11-27 20:27:29] 2025-11-28 00:34:24,632 | INFO     | [payload] control thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:24,696 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:24,767 | INFO     | [data] control thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:25,038 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:25,120 | INFO     | [job] validate thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:25,243 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:25,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:25,510 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:25,518 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:25,574 | INFO     | [job] control thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:26,043 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:27:29] 2025-11-28 00:34:30,072 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:27:29] 2025-11-28 00:34:53,522 | INFO     | PID=1904920 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:27:29] 2025-11-28 00:34:53,523 | INFO     | .. there are 73 such processes running
[2025-11-27 20:27:29] 2025-11-28 00:34:53,523 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:27:29] 2025-11-28 00:34:53,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:27:29] 2025-11-28 00:34:53,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:27:29] 2025-11-28 00:34:54,572 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:27:29] 2025-11-28 00:34:56,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140559062615872)>', '<ExcThread(monitor, started 140558433511168)>']
[2025-11-27 20:27:29] 2025-11-28 00:34:56,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:27:29] 2025-11-28 00:34:56,559 | INFO     | [monitor] control thread has ended
[2025-11-27 20:27:29] 2025-11-28 00:35:01,064 | INFO     | all workflow threads have been joined
[2025-11-27 20:27:29] 2025-11-28 00:35:01,065 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:27:29] 2025-11-28 00:35:01,065 | INFO     | traces error code: 0
[2025-11-27 20:27:29] 2025-11-28 00:35:01,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:27:29] 2025-11-28 00:35:01,204 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:27:29] 2025-11-28 00:35:01,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:27:29] 2025-11-28 00:35:01,350 [wrapper] pilotpid: 1904920
[2025-11-27 20:27:29] 2025-11-28 00:35:01,393 [wrapper] Pilot exit status: 0
[2025-11-27 20:27:29] 2025-11-28 00:35:01,475 [wrapper] pandaids: 6898271405
[2025-11-27 20:27:29] 2025-11-28 00:35:01,932 [wrapper] cleanup supervisor_pilot 1591255 1904921
[2025-11-27 20:27:29] 2025-11-28 00:35:01,950 [wrapper] Test setup, not cleaning
[2025-11-27 20:27:29] 2025-11-28 00:35:01,953 [wrapper] apfmon messages muted
[2025-11-27 20:27:29] 2025-11-28 00:35:01,959 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:27:29] 2025-11-28 00:35:01,962 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:27:29]  *** Error codes and diagnostics ***
[2025-11-27 20:27:29]     "exeErrorCode": 0,
[2025-11-27 20:27:29]     "exeErrorDiag": "",
[2025-11-27 20:27:29]     "pilotErrorCode": 0,
[2025-11-27 20:27:29]     "pilotErrorDiag": "",
[2025-11-27 20:27:29]  *** Listing of results directory ***
[2025-11-27 20:27:29] total 1307572
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:05 queuedata.json
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-27 20:27:29] -rwx------. 1 boincer umatlas     36292 Nov 26 10:06 runpilot2-wrapper.sh
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas       100 Nov 27 08:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:27:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 08:29 run_atlas
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas       105 Nov 27 08:29 job.xml
[2025-11-27 20:27:29] -rw-r--r--. 2 boincer umatlas 409615121 Nov 27 08:29 EVNT.47483658._002534.pool.root.1
[2025-11-27 20:27:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:29 start_atlas.sh
[2025-11-27 20:27:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 08:29 shared
[2025-11-27 20:27:29] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 08:29 input.tar.gz
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas         0 Nov 27 08:29 boinc_lockfile
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 08:29 pandaJob.out
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas        57 Nov 27 08:29 setup.sh.local
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas    991566 Nov 27 08:29 agis_schedconf.cvmfs.json
[2025-11-27 20:27:29] drwx------. 5 boincer umatlas      4096 Nov 27 08:29 pilot3
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas       533 Nov 27 19:24 boinc_task_state.xml
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas 911536439 Nov 27 19:32 HITS.47556161._005166.pool.root.1
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas      1068 Nov 27 19:33 memory_monitor_summary.json
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas   2083381 Nov 27 19:33 log.47556161._005166.job.log.tgz.1
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas      7935 Nov 27 19:34 heartbeat.json
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas        95 Nov 27 19:34 pilot_heartbeat.json
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas      4824 Nov 27 19:35 pilotlog.txt
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas   4857347 Nov 27 19:35 log.47556161._005166.job.log.1
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas       353 Nov 27 19:35 output.list
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:35 runtime_log
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas   6963200 Nov 27 19:35 result.tar.gz
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas      9340 Nov 27 19:35 runtime_log.err
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas       663 Nov 27 19:35 jTwNDm2GWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm72MKDmojMmnm.diag
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 20:27 init_data.xml
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:27 wrapper_checkpoint.txt
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:27 boinc_mmap_file
[2025-11-27 20:27:29] -rw-r--r--. 1 boincer umatlas     21346 Nov 27 20:27 stderr.txt
[2025-11-27 20:27:29] HITS file was successfully produced:
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas 911536439 Nov 27 19:32 shared/HITS.pool.root.1
[2025-11-27 20:27:29]  *** Contents of shared directory: ***
[2025-11-27 20:27:29] total 1297596
[2025-11-27 20:27:29] -rw-r--r--. 2 boincer umatlas 409615121 Nov 27 08:29 ATLAS.root_0
[2025-11-27 20:27:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 08:29 start_atlas.sh
[2025-11-27 20:27:29] -rw-r--r--. 2 boincer umatlas    590109 Nov 27 08:29 input.tar.gz
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas 911536439 Nov 27 19:32 HITS.pool.root.1
[2025-11-27 20:27:29] -rw-------. 1 boincer umatlas   6963200 Nov 27 19:35 result.tar.gz
20:27:30 (1900724): run_atlas exited; CPU time 192053.760252
20:27:30 (1900724): called boinc_finish(0)

</stderr_txt>
]]>

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