Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
07:00:13 (364678): wrapper (7.7.26015): starting
07:00:13 (364678): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:00:13] Arguments: --nthreads 8
[2025-11-27 07:00:13] Threads: 8
[2025-11-27 07:00:13] Checking for CVMFS
[2025-11-27 07:00:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:00:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:00:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:00:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:00:13] 2.11.3.0 1658007 5717 85608 153366 3 130 3392458 4096001 2841 130560 0 9460245 99.922 678495 714 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-27 07:00:13] CVMFS is ok
[2025-11-27 07:00:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:00:13] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-27 07:00:13] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-27 07:00:13] Further information can be found at the LHC@home message board.
[2025-11-27 07:00:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:00:13] Checking for apptainer binary...
[2025-11-27 07:00:13] apptainer is not installed, using version from CVMFS
[2025-11-27 07:00:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:00:13] officedc-System-Product-Name
[2025-11-27 07:00:13] apptainer works
[2025-11-27 07:00:13] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:00:13] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:00:13] Starting ATLAS job with PandaID=6898271451
[2025-11-27 07:00:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:35:11]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:35:11] 2025-11-27 19:34:38,992 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3943.6575624999996
[2025-11-27 12:35:11] 2025-11-27 19:34:38,997 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6898271451/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:35:11] 2025-11-27 19:34:38,998 | INFO     | extracted standard info from prmon json
[2025-11-27 12:35:11] 2025-11-27 19:34:38,998 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:35:11] 2025-11-27 19:34:38,998 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:35:11] 2025-11-27 19:34:39,002 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:35:11] 2025-11-27 19:34:39,002 | INFO     | sum of square deviations: 11042289709.124569
[2025-11-27 12:35:11] 2025-11-27 19:34:39,004 | INFO     | sum of deviations: 201809956215.24622
[2025-11-27 12:35:11] 2025-11-27 19:34:39,004 | INFO     | mean x: 1764262047.1732523
[2025-11-27 12:35:11] 2025-11-27 19:34:39,004 | INFO     | mean y: 2832211.7325227964
[2025-11-27 12:35:11] 2025-11-27 19:34:39,004 | INFO     | intersect: -32240991838.45914
[2025-11-27 12:35:11] 2025-11-27 19:34:39,004 | INFO     | chi2: 4.760463847955652
[2025-11-27 12:35:11] 2025-11-27 19:34:39,005 | INFO     | sum of square deviations: 10546465238.97225
[2025-11-27 12:35:11] 2025-11-27 19:34:39,007 | INFO     | sum of deviations: 286325472266.6387
[2025-11-27 12:35:11] 2025-11-27 19:34:39,007 | INFO     | mean x: 1764261894.675926
[2025-11-27 12:35:11] 2025-11-27 19:34:39,007 | INFO     | mean y: 2858116.787037037
[2025-11-27 12:35:11] 2025-11-27 19:34:39,007 | INFO     | intersect: -47895002327.339
[2025-11-27 12:35:11] 2025-11-27 19:34:39,007 | INFO     | chi2: 2.4988616256433387
[2025-11-27 12:35:11] 2025-11-27 19:34:39,007 | INFO     | current chi2=2.4988616256433387 (change=47.50802221265776 %)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,008 | INFO     | sum of square deviations: 10065710818.81511
[2025-11-27 12:35:11] 2025-11-27 19:34:39,009 | INFO     | sum of deviations: 278985478796.5927
[2025-11-27 12:35:11] 2025-11-27 19:34:39,010 | INFO     | mean x: 1764261742.1786833
[2025-11-27 12:35:11] 2025-11-27 19:34:39,010 | INFO     | mean y: 2855788.4106583074
[2025-11-27 12:35:11] 2025-11-27 19:34:39,010 | INFO     | intersect: -48896165425.68883
[2025-11-27 12:35:11] 2025-11-27 19:34:39,011 | INFO     | chi2: 2.4955245422713026
[2025-11-27 12:35:11] 2025-11-27 19:34:39,011 | INFO     | current chi2=2.4955245422713026 (change=0.13354414417312707 %)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,011 | INFO     | right removable region: 318
[2025-11-27 12:35:11] 2025-11-27 19:34:39,011 | INFO     | sum of square deviations: 10546430468.972242
[2025-11-27 12:35:11] 2025-11-27 19:34:39,013 | INFO     | sum of deviations: 109457513126.49072
[2025-11-27 12:35:11] 2025-11-27 19:34:39,013 | INFO     | mean x: 1764262199.675926
[2025-11-27 12:35:11] 2025-11-27 19:34:39,013 | INFO     | mean y: 2860523.614197531
[2025-11-27 12:35:11] 2025-11-27 19:34:39,013 | INFO     | intersect: -18307766322.85644
[2025-11-27 12:35:11] 2025-11-27 19:34:39,013 | INFO     | chi2: 2.3998176954883617
[2025-11-27 12:35:11] 2025-11-27 19:34:39,014 | INFO     | current chi2=2.3998176954883617 (change=49.58857430418369 %)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,014 | INFO     | sum of square deviations: 10065661286.169226
[2025-11-27 12:35:11] 2025-11-27 19:34:39,016 | INFO     | sum of deviations: 90839115479.52979
[2025-11-27 12:35:11] 2025-11-27 19:34:39,016 | INFO     | mean x: 1764262352.1755486
[2025-11-27 12:35:11] 2025-11-27 19:34:39,016 | INFO     | mean y: 2866419.4012539187
[2025-11-27 12:35:11] 2025-11-27 19:34:39,016 | INFO     | intersect: -15918991766.476025
[2025-11-27 12:35:11] 2025-11-27 19:34:39,016 | INFO     | chi2: 2.3569468237097633
[2025-11-27 12:35:11] 2025-11-27 19:34:39,016 | INFO     | current chi2=2.3569468237097633 (change=1.7864220211058233 %)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,016 | INFO     | left removable region: 20
[2025-11-27 12:35:11] 2025-11-27 19:34:39,017 | INFO     | sum of square deviations: 8205777536.714779
[2025-11-27 12:35:11] 2025-11-27 19:34:39,018 | INFO     | sum of deviations: 141601418759.57043
[2025-11-27 12:35:11] 2025-11-27 19:34:39,018 | INFO     | mean x: 1764262321.6812081
[2025-11-27 12:35:11] 2025-11-27 19:34:39,018 | INFO     | mean y: 2900913.637583893
[2025-11-27 12:35:11] 2025-11-27 19:34:39,018 | INFO     | intersect: -30441751856.480057
[2025-11-27 12:35:11] 2025-11-27 19:34:39,019 | INFO     | chi2: 0.037291910879903724
[2025-11-27 12:35:11] 2025-11-27 19:34:39,019 | INFO     | current memory leak: 17.26 B/s (using 298 data points, chi2=0.04)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,019 | INFO     | could have reported an average CPU frequency of 3988 MHz (15 samples)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,019 | INFO     | ..............................
[2025-11-27 12:35:11] 2025-11-27 19:34:39,019 | INFO     | . Timing measurements:
[2025-11-27 12:35:11] 2025-11-27 19:34:39,019 | INFO     | . get job = 0 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,020 | INFO     | . initial setup = 3 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,020 | INFO     | . payload setup = 3 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,020 | INFO     | . stage-in = 0 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,020 | INFO     | . payload execution = 20023 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,020 | INFO     | . stage-out = 6 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,020 | INFO     | . log creation = 0 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,020 | INFO     | ..............................
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | 
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | job summary report
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | --------------------------------------------------
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | PanDA job id: 6898271451
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | task id: 47556161
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | errors: (none)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | pilot state: finished 
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | transexitcode: 0
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | exeerrorcode: 0
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | exeerrordiag: 
[2025-11-27 12:35:11] 2025-11-27 19:34:39,087 | INFO     | exitcode: 0
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | exitmsg: OK
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | cpuconsumptiontime: 150979 s
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | nevents: 1000
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | neventsw: 0
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | pid: 375187
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | pgrp: 375187
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | corecount: 8
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | event service: False
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | sizes: {0: 2284151, 1: 2284350, 3: 2284612, 11: 2284640, 20031: 2318975, 20038: 2327983, 20040: 2328167, 20043: 2328413}
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | --------------------------------------------------
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | 
[2025-11-27 12:35:11] 2025-11-27 19:34:39,088 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | job 6898271451 has completed (purged errors)
[2025-11-27 12:35:11] 2025-11-27 19:34:39,105 | INFO     | overall cleanup function is called
[2025-11-27 12:35:11] 2025-11-27 19:34:39,127 | INFO     | PID=368518 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 12:35:11] 2025-11-27 19:34:39,127 | INFO     | .. there are 4 such processes running
[2025-11-27 12:35:11] 2025-11-27 19:34:40,122 | INFO     | --- collectZombieJob: --- 10, [375187]
[2025-11-27 12:35:11] 2025-11-27 19:34:40,122 | INFO     | zombie collector waiting for pid 375187
[2025-11-27 12:35:11] 2025-11-27 19:34:40,122 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:35:11] 2025-11-27 19:34:40,122 | INFO     | collected zombie processes
[2025-11-27 12:35:11] 2025-11-27 19:34:40,123 | INFO     | will attempt to kill all subprocesses of pid=375187
[2025-11-27 12:35:11] 2025-11-27 19:34:40,252 | INFO     | process IDs to be killed: [375187] (in reverse order)
[2025-11-27 12:35:11] 2025-11-27 19:34:40,311 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:35:11] 2025-11-27 19:34:40,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:35:11] 2025-11-27 19:34:40,315 | INFO     | did not find any defunct processes belonging to 375187
[2025-11-27 12:35:11] 2025-11-27 19:34:40,318 | INFO     | did not find any defunct processes belonging to 375187
[2025-11-27 12:35:11] 2025-11-27 19:34:40,319 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:35:11] 2025-11-27 19:34:40,319 | INFO     | ready for new job
[2025-11-27 12:35:11] 2025-11-27 19:34:40,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:35:11] 2025-11-27 19:34:40,321 | INFO     | ***************************************
[2025-11-27 12:35:11] 2025-11-27 19:34:40,321 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:35:11] 2025-11-27 19:34:40,321 | INFO     | ***************************************
[2025-11-27 12:35:11] 2025-11-27 19:34:40,321 | INFO     | 
[2025-11-27 12:35:11] 2025-11-27 19:34:40,323 | INFO     | architecture information:
[2025-11-27 12:35:11] 2025-11-27 19:34:40,323 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:35:11] 2025-11-27 19:34:40,334 | INFO     | cat /etc/os-release:
[2025-11-27 12:35:11] NAME="CentOS Linux"
[2025-11-27 12:35:11] VERSION="7 (Core)"
[2025-11-27 12:35:11] ID="centos"
[2025-11-27 12:35:11] ID_LIKE="rhel fedora"
[2025-11-27 12:35:11] VERSION_ID="7"
[2025-11-27 12:35:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:35:11] ANSI_COLOR="0;31"
[2025-11-27 12:35:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:35:11] HOME_URL="https://www.centos.org/"
[2025-11-27 12:35:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:35:11] 
[2025-11-27 12:35:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:35:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:35:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:35:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:35:11] 
[2025-11-27 12:35:11] 2025-11-27 19:34:40,335 | INFO     | ***************************************
[2025-11-27 12:35:11] 2025-11-27 19:34:40,837 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-11-27 12:35:11] 2025-11-27 19:34:40,851 | INFO     | sufficient remaining disk space (380719071232 B)
[2025-11-27 12:35:11] 2025-11-27 19:34:40,852 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:35:11] 2025-11-27 19:34:40,852 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:35:11] 2025-11-27 19:34:40,852 | INFO     | update_server=False
[2025-11-27 12:35:11] 2025-11-27 19:34:40,852 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:35:11] 2025-11-27 19:34:40,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:35:11] 2025-11-27 19:34:40,961 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 12:35:11] 2025-11-27 19:34:40,961 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 12:35:11] 2025-11-27 19:34:40,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:35:11] 2025-11-27 19:34:40,962 | INFO     | will abort loop
[2025-11-27 12:35:11] 2025-11-27 19:34:41,243 | INFO     | all data control threads have been joined
[2025-11-27 12:35:11] 2025-11-27 19:34:41,272 | INFO     | all job control threads have been joined
[2025-11-27 12:35:11] 2025-11-27 19:34:41,529 | INFO     | all payload control threads have been joined
[2025-11-27 12:35:11] 2025-11-27 19:34:41,857 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:41,858 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:41,967 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,065 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:35:11] 2025-11-27 19:34:42,249 | INFO     | [data] control thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,278 | INFO     | [job] control thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,326 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:35:11] 2025-11-27 19:34:42,386 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,534 | INFO     | [payload] control thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,781 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,901 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:42,950 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:43,113 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:43,151 | INFO     | [job] validate thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:43,181 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:44,226 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:46,332 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:35:11] 2025-11-27 19:34:55,321 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:35:11] 2025-11-27 19:34:55,831 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132053241980736)>', '<ExcThread(monitor, started 132052703758080)>']
[2025-11-27 12:35:11] 2025-11-27 19:35:00,845 | INFO     | all workflow threads have been joined
[2025-11-27 12:35:11] 2025-11-27 19:35:00,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:35:11] 2025-11-27 19:35:00,845 | INFO     | traces error code: 0
[2025-11-27 12:35:11] 2025-11-27 19:35:00,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:35:11] 2025-11-27 19:35:11,359 | INFO     | PID=368518 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 12:35:11] 2025-11-27 19:35:11,359 | INFO     | .. there are 4 such processes running
[2025-11-27 12:35:11] 2025-11-27 19:35:11,360 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:35:11] 2025-11-27 19:35:11,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:35:11] 2025-11-27 19:35:11,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:35:11] 2025-11-27 19:35:11,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:35:11] 2025-11-27 19:35:11,360 | INFO     | [monitor] control thread has ended
[2025-11-27 12:35:11] 2025-11-27 19:35:11,438 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:35:11] 2025-11-27 19:35:11,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:35:11] 2025-11-27 19:35:11,441 [wrapper] pilotpid: 368518
[2025-11-27 12:35:11] 2025-11-27 19:35:11,443 [wrapper] Pilot exit status: 0
[2025-11-27 12:35:11] 2025-11-27 19:35:11,450 [wrapper] pandaids: 6898271451
[2025-11-27 12:35:11] 2025-11-27 19:35:11,482 [wrapper] cleanup supervisor_pilot  548495 368519
[2025-11-27 12:35:11] 2025-11-27 19:35:11,484 [wrapper] Test setup, not cleaning
[2025-11-27 12:35:11] 2025-11-27 19:35:11,486 [wrapper] apfmon messages muted
[2025-11-27 12:35:11] 2025-11-27 19:35:11,487 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:35:11] 2025-11-27 19:35:11,489 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:35:11]  *** Error codes and diagnostics ***
[2025-11-27 12:35:11]     "exeErrorCode": 0,
[2025-11-27 12:35:11]     "exeErrorDiag": "",
[2025-11-27 12:35:11]     "pilotErrorCode": 0,
[2025-11-27 12:35:11]     "pilotErrorDiag": "",
[2025-11-27 12:35:11]  *** Listing of results directory ***
[2025-11-27 12:35:11] total 1301408
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc    576529 Nov 26 08:05 pilot3.tar.gz
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc      5112 Nov 26 08:08 queuedata.json
[2025-11-27 12:35:11] -rwx------ 1 boinc boinc     36292 Nov 26 08:08 runpilot2-wrapper.sh
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc       100 Nov 27 07:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:35:11] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 07:00 run_atlas
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc       105 Nov 27 07:00 job.xml
[2025-11-27 12:35:11] -rw-r--r-- 2 boinc boinc 409481946 Nov 27 07:00 EVNT.47483658._002536.pool.root.1
[2025-11-27 12:35:11] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:00 start_atlas.sh
[2025-11-27 12:35:11] drwxrwx--x 2 boinc boinc      4096 Nov 27 07:00 shared
[2025-11-27 12:35:11] -rw-r--r-- 2 boinc boinc    590102 Nov 27 07:00 input.tar.gz
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc      9772 Nov 27 07:00 init_data.xml
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:00 boinc_lockfile
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc      2786 Nov 27 07:00 pandaJob.out
[2025-11-27 12:35:11] -rw------- 1 boinc boinc    991588 Nov 27 07:00 agis_schedconf.cvmfs.json
[2025-11-27 12:35:11] drwx------ 5 boinc boinc      4096 Nov 27 07:00 pilot3
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc       532 Nov 27 12:29 boinc_task_state.xml
[2025-11-27 12:35:11] -rw------- 1 boinc boinc 910202267 Nov 27 12:34 HITS.47556161._005189.pool.root.1
[2025-11-27 12:35:11] -rw------- 1 boinc boinc      1037 Nov 27 12:34 memory_monitor_summary.json
[2025-11-27 12:35:11] -rw------- 1 boinc boinc   1516240 Nov 27 12:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:35:11] -rw------- 1 boinc boinc   1631279 Nov 27 12:34 log.47556161._005189.job.log.tgz.1
[2025-11-27 12:35:11] -rw------- 1 boinc boinc      8597 Nov 27 12:34 heartbeat.json
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc      8192 Nov 27 12:35 boinc_mmap_file
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc        29 Nov 27 12:35 wrapper_checkpoint.txt
[2025-11-27 12:35:11] -rw------- 1 boinc boinc       821 Nov 27 12:35 pilotlog.txt
[2025-11-27 12:35:11] -rw------- 1 boinc boinc        95 Nov 27 12:35 pilot_heartbeat.json
[2025-11-27 12:35:11] -rw------- 1 boinc boinc   2887206 Nov 27 12:35 log.47556161._005189.job.log.1
[2025-11-27 12:35:11] -rw------- 1 boinc boinc       353 Nov 27 12:35 output.list
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc       620 Nov 27 12:35 runtime_log
[2025-11-27 12:35:11] -rw------- 1 boinc boinc   4536320 Nov 27 12:35 result.tar.gz
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc      8968 Nov 27 12:35 runtime_log.err
[2025-11-27 12:35:11] -rw------- 1 boinc boinc       664 Nov 27 12:35 0bsMDmAJWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma3MKDmECcwdm.diag
[2025-11-27 12:35:11] -rw-r--r-- 1 boinc boinc     21530 Nov 27 12:35 stderr.txt
[2025-11-27 12:35:11] HITS file was successfully produced:
[2025-11-27 12:35:11] -rw------- 1 boinc boinc 910202267 Nov 27 12:34 shared/HITS.pool.root.1
[2025-11-27 12:35:11]  *** Contents of shared directory: ***
[2025-11-27 12:35:11] total 1293796
[2025-11-27 12:35:11] -rw-r--r-- 2 boinc boinc 409481946 Nov 27 07:00 ATLAS.root_0
[2025-11-27 12:35:11] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:00 start_atlas.sh
[2025-11-27 12:35:11] -rw-r--r-- 2 boinc boinc    590102 Nov 27 07:00 input.tar.gz
[2025-11-27 12:35:11] -rw------- 1 boinc boinc 910202267 Nov 27 12:34 HITS.pool.root.1
[2025-11-27 12:35:11] -rw------- 1 boinc boinc   4536320 Nov 27 12:35 result.tar.gz
12:35:13 (364678): run_atlas exited; CPU time 150843.569913
12:35:13 (364678): called boinc_finish(0)

</stderr_txt>
]]>

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