Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:28:36 (3807315): wrapper (7.7.26015): starting
07:28:36 (3807315): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:28:36] Arguments: --nthreads 8
[2025-11-27 07:28:36] Threads: 8
[2025-11-27 07:28:36] Checking for CVMFS
[2025-11-27 07:28:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:28:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:28:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:28:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:28:39] 2.13.3.0 9582 31468 250060 153364 2 483 39547027 40960000 69911 16776704 0 404502855 99.724 280961851 48525 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 07:28:39] CVMFS is ok
[2025-11-27 07:28:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:28:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:28:39] Further information can be found at the LHC@home message board.
[2025-11-27 07:28:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:28:39] Checking for apptainer binary...
[2025-11-27 07:28:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:28:39] Running /usr/bin/apptainer --version
[2025-11-27 07:28:39] apptainer version 1.4.4-1.el9
[2025-11-27 07:28:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:28:39] c8-7-4.aglt2.org
[2025-11-27 07:28:39] apptainer works
[2025-11-27 07:28:39] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:28:39] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:28:40] Starting ATLAS job with PandaID=6898271369
[2025-11-27 07:28:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:07:22]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:07:22] 2025-11-27 23:06:13,038 | INFO     | monitor loop #2103: job 0:6898271369 is in state 'finished'
[2025-11-27 18:07:22] 2025-11-27 23:06:13,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:07:22] 2025-11-27 23:06:14,616 | INFO     | time since job start (38168s) is within the limit (172800.0s)
[2025-11-27 18:07:22] 2025-11-27 23:06:15,555 | INFO     | monitor loop #2104: job 0:6898271369 is in state 'finished'
[2025-11-27 18:07:22] 2025-11-27 23:06:15,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:07:22] 2025-11-27 23:06:16,625 | INFO     | time since job start (38170s) is within the limit (172800.0s)
[2025-11-27 18:07:22] 2025-11-27 23:06:18,080 | INFO     | monitor loop #2105: job 0:6898271369 is in state 'finished'
[2025-11-27 18:07:22] 2025-11-27 23:06:18,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:07:22] 2025-11-27 23:06:20,602 | INFO     | monitor loop #2106: job 0:6898271369 is in state 'finished'
[2025-11-27 18:07:22] 2025-11-27 23:06:20,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:07:22] 2025-11-27 23:06:20,734 | INFO     | PID=3817320 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:07:22] 2025-11-27 23:06:20,734 | INFO     | .. there are 100 such processes running
[2025-11-27 18:07:22] 2025-11-27 23:06:21,735 | INFO     | time since job start (38175s) is within the limit (172800.0s)
[2025-11-27 18:07:22] 2025-11-27 23:06:23,117 | INFO     | monitor loop #2107: job 0:6898271369 is in state 'finished'
[2025-11-27 18:07:22] 2025-11-27 23:06:23,118 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:07:22] 2025-11-27 23:06:23,751 | INFO     | time since job start (38177s) is within the limit (172800.0s)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,209 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:07:22] 2025-11-27 23:06:24,248 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.993374999999
[2025-11-27 18:07:22] 2025-11-27 23:06:24,314 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898271369/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,315 | INFO     | extracted standard info from prmon json
[2025-11-27 18:07:22] 2025-11-27 23:06:24,315 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:07:22] 2025-11-27 23:06:24,315 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:07:22] 2025-11-27 23:06:24,357 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:07:22] 2025-11-27 23:06:24,362 | INFO     | sum of square deviations: 74978784055.7079
[2025-11-27 18:07:22] 2025-11-27 23:06:24,366 | INFO     | sum of deviations: 270276524086.1921
[2025-11-27 18:07:22] 2025-11-27 23:06:24,367 | INFO     | mean x: 1764265755.1460674
[2025-11-27 18:07:22] 2025-11-27 23:06:24,367 | INFO     | mean y: 2751992.1187800965
[2025-11-27 18:07:22] 2025-11-27 23:06:24,367 | INFO     | intersect: -6356908568.805984
[2025-11-27 18:07:22] 2025-11-27 23:06:24,367 | INFO     | chi2: 33.45864190866056
[2025-11-27 18:07:22] 2025-11-27 23:06:24,371 | INFO     | sum of square deviations: 73188168241.58769
[2025-11-27 18:07:22] 2025-11-27 23:06:24,381 | INFO     | sum of deviations: 477452868243.51886
[2025-11-27 18:07:22] 2025-11-27 23:06:24,381 | INFO     | mean x: 1764265602.6553397
[2025-11-27 18:07:22] 2025-11-27 23:06:24,381 | INFO     | mean y: 2769633.3122977344
[2025-11-27 18:07:22] 2025-11-27 23:06:24,382 | INFO     | intersect: -11506654534.138336
[2025-11-27 18:07:22] 2025-11-27 23:06:24,382 | INFO     | chi2: 29.64411437103766
[2025-11-27 18:07:22] 2025-11-27 23:06:24,382 | INFO     | current chi2=29.64411437103766 (change=11.400724357062247 %)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,382 | INFO     | right removable region: 617
[2025-11-27 18:07:22] 2025-11-27 23:06:24,382 | INFO     | sum of square deviations: 73187732701.58763
[2025-11-27 18:07:22] 2025-11-27 23:06:24,391 | INFO     | sum of deviations: 16873357353.9226
[2025-11-27 18:07:22] 2025-11-27 23:06:24,391 | INFO     | mean x: 1764265907.6553397
[2025-11-27 18:07:22] 2025-11-27 23:06:24,391 | INFO     | mean y: 2773566.7508090613
[2025-11-27 18:07:22] 2025-11-27 23:06:24,391 | INFO     | intersect: -403976144.27781785
[2025-11-27 18:07:22] 2025-11-27 23:06:24,392 | INFO     | chi2: 28.630593769367835
[2025-11-27 18:07:22] 2025-11-27 23:06:24,392 | INFO     | current chi2=28.630593769367835 (change=14.429898716370241 %)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,392 | INFO     | left removable region: 10
[2025-11-27 18:07:22] 2025-11-27 23:06:24,392 | INFO     | sum of square deviations: 69348796354.13817
[2025-11-27 18:07:22] 2025-11-27 23:06:24,401 | INFO     | sum of deviations: 50128361591.792816
[2025-11-27 18:07:22] 2025-11-27 23:06:24,401 | INFO     | mean x: 1764265877.1762767
[2025-11-27 18:07:22] 2025-11-27 23:06:24,401 | INFO     | mean y: 2814910.2355848434
[2025-11-27 18:07:22] 2025-11-27 23:06:24,401 | INFO     | intersect: -1272474099.5912826
[2025-11-27 18:07:22] 2025-11-27 23:06:24,401 | INFO     | chi2: 20.3228365989456
[2025-11-27 18:07:22] 2025-11-27 23:06:24,401 | INFO     | current memory leak: 0.72 B/s (using 607 data points, chi2=20.32)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | could have reported an average CPU frequency of 3798 MHz (24 samples)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | ..............................
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . Timing measurements:
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . get job = 0 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . initial setup = 10 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . payload setup = 58 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . stage-in = 0 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . payload execution = 37985 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . stage-out = 5 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | . log creation = 1 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,402 | INFO     | ..............................
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | 
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | job summary report
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | --------------------------------------------------
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | PanDA job id: 6898271369
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | task id: 47556161
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | errors: (none)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:07:22] 2025-11-27 23:06:24,510 | INFO     | pilot state: finished 
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | transexitcode: 0
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | exeerrorcode: 0
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | exeerrordiag: 
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | exitcode: 0
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | exitmsg: OK
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | cpuconsumptiontime: 133573 s
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | nevents: 1000
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | neventsw: 0
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | pid: 3829706
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | pgrp: 3829706
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | corecount: 8
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | event service: False
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | sizes: {0: 2284088, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 37: 2284873, 45: 2284901, 38049: 2326558, 38055: 2335552, 38059: 2335608, 38099:
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | --------------------------------------------------
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | 
[2025-11-27 18:07:22] 2025-11-27 23:06:24,514 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 18:07:22] 2025-11-27 23:06:24,630 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | job 6898271369 has completed (purged errors)
[2025-11-27 18:07:22] 2025-11-27 23:06:24,631 | INFO     | overall cleanup function is called
[2025-11-27 18:07:22] 2025-11-27 23:06:25,659 | INFO     | --- collectZombieJob: --- 10, [3829706]
[2025-11-27 18:07:22] 2025-11-27 23:06:25,663 | INFO     | zombie collector waiting for pid 3829706
[2025-11-27 18:07:22] 2025-11-27 23:06:25,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:07:22] 2025-11-27 23:06:25,663 | INFO     | collected zombie processes
[2025-11-27 18:07:22] 2025-11-27 23:06:25,664 | INFO     | will attempt to kill all subprocesses of pid=3829706
[2025-11-27 18:07:22] 2025-11-27 23:06:27,061 | INFO     | process IDs to be killed: [3829706] (in reverse order)
[2025-11-27 18:07:22] 2025-11-27 23:06:27,448 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:07:22] 2025-11-27 23:06:27,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:07:22] 2025-11-27 23:06:27,712 | INFO     | did not find any defunct processes belonging to 3829706
[2025-11-27 18:07:22] 2025-11-27 23:06:27,931 | INFO     | did not find any defunct processes belonging to 3829706
[2025-11-27 18:07:22] 2025-11-27 23:06:27,943 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:07:22] 2025-11-27 23:06:27,944 | INFO     | ready for new job
[2025-11-27 18:07:22] 2025-11-27 23:06:27,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:07:22] 2025-11-27 23:06:27,946 | INFO     | ***************************************
[2025-11-27 18:07:22] 2025-11-27 23:06:27,946 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:07:22] 2025-11-27 23:06:27,946 | INFO     | ***************************************
[2025-11-27 18:07:22] 2025-11-27 23:06:27,946 | INFO     | 
[2025-11-27 18:07:22] 2025-11-27 23:06:27,965 | INFO     | architecture information:
[2025-11-27 18:07:22] 2025-11-27 23:06:27,992 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:07:22] 2025-11-27 23:06:28,058 | INFO     | cat /etc/os-release:
[2025-11-27 18:07:22] NAME="CentOS Linux"
[2025-11-27 18:07:22] VERSION="7 (Core)"
[2025-11-27 18:07:22] ID="centos"
[2025-11-27 18:07:22] ID_LIKE="rhel fedora"
[2025-11-27 18:07:22] VERSION_ID="7"
[2025-11-27 18:07:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:07:22] ANSI_COLOR="0;31"
[2025-11-27 18:07:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:07:22] HOME_URL="https://www.centos.org/"
[2025-11-27 18:07:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:07:22] 
[2025-11-27 18:07:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:07:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:07:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:07:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:07:22] 
[2025-11-27 18:07:22] 2025-11-27 23:06:28,058 | INFO     | ***************************************
[2025-11-27 18:07:22] 2025-11-27 23:06:28,563 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 18:07:22] 2025-11-27 23:06:28,616 | INFO     | sufficient remaining disk space (162913058816 B)
[2025-11-27 18:07:22] 2025-11-27 23:06:28,616 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:07:22] 2025-11-27 23:06:28,616 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:07:22] 2025-11-27 23:06:28,617 | INFO     | update_server=False
[2025-11-27 18:07:22] 2025-11-27 23:06:28,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:07:22] 2025-11-27 23:06:28,739 | INFO     | all data control threads have been joined
[2025-11-27 18:07:22] 2025-11-27 23:06:29,152 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:07:22] 2025-11-27 23:06:29,153 | INFO     | aborting loop
[2025-11-27 18:07:22] 2025-11-27 23:06:29,578 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:07:22] 2025-11-27 23:06:29,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:07:22] 2025-11-27 23:06:29,623 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:29,747 | INFO     | [data] control thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:29,748 | INFO     | all payload control threads have been joined
[2025-11-27 18:07:22] 2025-11-27 23:06:30,016 | INFO     | [job] validate thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,050 | INFO     | all job control threads have been joined
[2025-11-27 18:07:22] 2025-11-27 23:06:30,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,158 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,237 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,443 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,448 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,491 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,584 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,682 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,739 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:30,754 | INFO     | [payload] control thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:31,065 | INFO     | [job] control thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:31,624 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:31,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:07:22] 2025-11-27 23:06:35,675 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:07:22] 2025-11-27 23:06:55,855 | INFO     | 38189s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 18:07:22] 2025-11-27 23:06:58,907 | INFO     | PID=3817320 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:07:22] 2025-11-27 23:06:58,907 | INFO     | .. there are 99 such processes running
[2025-11-27 18:07:22] 2025-11-27 23:06:58,907 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:07:22] 2025-11-27 23:06:58,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:07:22] 2025-11-27 23:06:58,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:07:22] 2025-11-27 23:07:14,017 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:07:22] 2025-11-27 23:07:15,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139869594384192)>', '<ExcThread(monitor, started 139868965435136)>']
[2025-11-27 18:07:22] 2025-11-27 23:07:16,024 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:07:22] 2025-11-27 23:07:16,025 | INFO     | [monitor] control thread has ended
[2025-11-27 18:07:22] 2025-11-27 23:07:20,357 | INFO     | all workflow threads have been joined
[2025-11-27 18:07:22] 2025-11-27 23:07:20,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:07:22] 2025-11-27 23:07:20,358 | INFO     | traces error code: 0
[2025-11-27 18:07:22] 2025-11-27 23:07:20,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:07:22] 2025-11-27 23:07:20,732 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:07:22] 2025-11-27 23:07:20,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:07:22] 2025-11-27 23:07:20,786 [wrapper] pilotpid: 3817320
[2025-11-27 18:07:22] 2025-11-27 23:07:20,828 [wrapper] Pilot exit status: 0
[2025-11-27 18:07:22] 2025-11-27 23:07:21,032 [wrapper] pandaids: 6898271369
[2025-11-27 18:07:22] 2025-11-27 23:07:21,502 [wrapper] cleanup supervisor_pilot  722130 3817321
[2025-11-27 18:07:22] 2025-11-27 23:07:21,549 [wrapper] Test setup, not cleaning
[2025-11-27 18:07:22] 2025-11-27 23:07:21,600 [wrapper] apfmon messages muted
[2025-11-27 18:07:22] 2025-11-27 23:07:21,645 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:07:22] 2025-11-27 23:07:21,697 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:07:22]  *** Error codes and diagnostics ***
[2025-11-27 18:07:22]     "exeErrorCode": 0,
[2025-11-27 18:07:22]     "exeErrorDiag": "",
[2025-11-27 18:07:22]     "pilotErrorCode": 0,
[2025-11-27 18:07:22]     "pilotErrorDiag": "",
[2025-11-27 18:07:22]  *** Listing of results directory ***
[2025-11-27 18:07:22] total 1302864
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 09:19 pilot3.tar.gz
[2025-11-27 18:07:22] -rwx------. 1 boincer umatlas     36292 Nov 26 10:05 runpilot2-wrapper.sh
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:05 queuedata.json
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas       100 Nov 27 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:07:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 07:28 run_atlas
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas       105 Nov 27 07:28 job.xml
[2025-11-27 18:07:22] -rw-r--r--. 2 boincer umatlas 409129550 Nov 27 07:28 EVNT.47483658._002530.pool.root.1
[2025-11-27 18:07:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 07:28 start_atlas.sh
[2025-11-27 18:07:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 07:28 shared
[2025-11-27 18:07:22] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 07:28 input.tar.gz
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas         0 Nov 27 07:28 boinc_lockfile
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 07:28 pandaJob.out
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas        57 Nov 27 07:28 setup.sh.local
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas    991566 Nov 27 07:29 agis_schedconf.cvmfs.json
[2025-11-27 18:07:22] drwx------. 5 boincer umatlas      4096 Nov 27 07:30 pilot3
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:38 boinc_task_state.xml
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 18:03 init_data.xml
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas 908238515 Nov 27 18:04 HITS.47556161._005130.pool.root.1
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas      1051 Nov 27 18:05 memory_monitor_summary.json
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas   1834797 Nov 27 18:05 log.47556161._005130.job.log.tgz.1
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas        95 Nov 27 18:06 pilot_heartbeat.json
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas      8578 Nov 27 18:06 heartbeat.json
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:07 boinc_mmap_file
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas      4941 Nov 27 18:07 pilotlog.txt
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:07 wrapper_checkpoint.txt
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas   4583539 Nov 27 18:07 log.47556161._005130.job.log.1
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas       353 Nov 27 18:07 output.list
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:07 runtime_log
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas   6440960 Nov 27 18:07 result.tar.gz
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 18:07 runtime_log.err
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas       658 Nov 27 18:07 7HhNDmsGWi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQyJKDm0c5bNo.diag
[2025-11-27 18:07:22] -rw-r--r--. 1 boincer umatlas     21913 Nov 27 18:07 stderr.txt
[2025-11-27 18:07:22] HITS file was successfully produced:
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas 908238515 Nov 27 18:04 shared/HITS.pool.root.1
[2025-11-27 18:07:22]  *** Contents of shared directory: ***
[2025-11-27 18:07:22] total 1293392
[2025-11-27 18:07:22] -rw-r--r--. 2 boincer umatlas 409129550 Nov 27 07:28 ATLAS.root_0
[2025-11-27 18:07:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 07:28 start_atlas.sh
[2025-11-27 18:07:22] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 07:28 input.tar.gz
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas 908238515 Nov 27 18:04 HITS.pool.root.1
[2025-11-27 18:07:22] -rw-------. 1 boincer umatlas   6440960 Nov 27 18:07 result.tar.gz
18:07:24 (3807315): run_atlas exited; CPU time 134345.231418
18:07:24 (3807315): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN