Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:05:38 (2580129): wrapper (7.7.26015): starting
06:05:38 (2580129): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:05:38] Arguments: --nthreads 8
[2025-11-27 06:05:38] Threads: 8
[2025-11-27 06:05:38] Checking for CVMFS
[2025-11-27 06:05:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:05:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:05:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:05:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:05:40] 2.13.3.0 22787 31357 267456 153360 1 953 37522166 40960000 66642 16776704 0 455590826 99.749 277660088 47709 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 06:05:40] CVMFS is ok
[2025-11-27 06:05:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:05:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:05:40] Further information can be found at the LHC@home message board.
[2025-11-27 06:05:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:05:40] Checking for apptainer binary...
[2025-11-27 06:05:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:05:40] Running /usr/bin/apptainer --version
[2025-11-27 06:05:41] apptainer version 1.4.4-1.el9
[2025-11-27 06:05:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:05:41] c8-6-11.aglt2.org
[2025-11-27 06:05:41] apptainer works
[2025-11-27 06:05:41] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:05:41] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:05:41] Starting ATLAS job with PandaID=6898271424
[2025-11-27 06:05:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:06:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:06:23] 2025-11-27 19:05:02,895 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:06:23] 2025-11-27 19:05:02,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:06:23] 2025-11-27 19:05:02,901 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:06:23] 2025-11-27 19:05:02,902 | INFO     | sum of square deviations: 31583659810.685036
[2025-11-27 14:06:23] 2025-11-27 19:05:02,905 | INFO     | sum of deviations: 501738567874.7177
[2025-11-27 14:06:23] 2025-11-27 19:05:02,905 | INFO     | mean x: 1764256010.5117774
[2025-11-27 14:06:23] 2025-11-27 19:05:02,905 | INFO     | mean y: 2828571.051391863
[2025-11-27 14:06:23] 2025-11-27 19:05:02,905 | INFO     | intersect: -28024173029.918
[2025-11-27 14:06:23] 2025-11-27 19:05:02,905 | INFO     | chi2: 8.728736160714762
[2025-11-27 14:06:23] 2025-11-27 19:05:02,907 | INFO     | sum of square deviations: 30580283885.68824
[2025-11-27 14:06:23] 2025-11-27 19:05:02,911 | INFO     | sum of deviations: 652027289455.7139
[2025-11-27 14:06:23] 2025-11-27 19:05:02,911 | INFO     | mean x: 1764255858.025974
[2025-11-27 14:06:23] 2025-11-27 19:05:02,911 | INFO     | mean y: 2851398.8571428573
[2025-11-27 14:06:23] 2025-11-27 19:05:02,911 | INFO     | intersect: -37614293337.76868
[2025-11-27 14:06:23] 2025-11-27 19:05:02,911 | INFO     | chi2: 5.624887893088322
[2025-11-27 14:06:23] 2025-11-27 19:05:02,911 | INFO     | current chi2=5.624887893088322 (change=35.55896535853454 %)
[2025-11-27 14:06:23] 2025-11-27 19:05:02,912 | INFO     | sum of square deviations: 29598031804.18387
[2025-11-27 14:06:23] 2025-11-27 19:05:02,914 | INFO     | sum of deviations: 657422607299.3866
[2025-11-27 14:06:23] 2025-11-27 19:05:02,914 | INFO     | mean x: 1764255705.512035
[2025-11-27 14:06:23] 2025-11-27 19:05:02,914 | INFO     | mean y: 2852214.2932166304
[2025-11-27 14:06:23] 2025-11-27 19:05:02,914 | INFO     | intersect: -39184266494.613205
[2025-11-27 14:06:23] 2025-11-27 19:05:02,915 | INFO     | chi2: 5.4804557520500135
[2025-11-27 14:06:23] 2025-11-27 19:05:02,915 | INFO     | current chi2=5.4804557520500135 (change=2.567733682582043 %)
[2025-11-27 14:06:23] 2025-11-27 19:05:02,915 | INFO     | right removable region: 456
[2025-11-27 14:06:23] 2025-11-27 19:05:02,915 | INFO     | sum of square deviations: 30579881466.63429
[2025-11-27 14:06:23] 2025-11-27 19:05:02,918 | INFO     | sum of deviations: 328934467303.07776
[2025-11-27 14:06:23] 2025-11-27 19:05:02,918 | INFO     | mean x: 1764256163.0281386
[2025-11-27 14:06:23] 2025-11-27 19:05:02,918 | INFO     | mean y: 2854810.5324675324
[2025-11-27 14:06:23] 2025-11-27 19:05:02,918 | INFO     | intersect: -18974480396.113934
[2025-11-27 14:06:23] 2025-11-27 19:05:02,918 | INFO     | chi2: 4.987350785223556
[2025-11-27 14:06:23] 2025-11-27 19:05:02,918 | INFO     | current chi2=4.987350785223556 (change=42.862853299770705 %)
[2025-11-27 14:06:23] 2025-11-27 19:05:02,919 | INFO     | sum of square deviations: 29597647899.50116
[2025-11-27 14:06:23] 2025-11-27 19:05:02,922 | INFO     | sum of deviations: 228057354276.44006
[2025-11-27 14:06:23] 2025-11-27 19:05:02,922 | INFO     | mean x: 1764256315.5404813
[2025-11-27 14:06:23] 2025-11-27 19:05:02,922 | INFO     | mean y: 2870421.273522976
[2025-11-27 14:06:23] 2025-11-27 19:05:02,922 | INFO     | intersect: -13591170191.475426
[2025-11-27 14:06:23] 2025-11-27 19:05:02,922 | INFO     | chi2: 3.450084861989624
[2025-11-27 14:06:23] 2025-11-27 19:05:02,922 | INFO     | current chi2=3.450084861989624 (change=30.823296564350734 %)
[2025-11-27 14:06:23] 2025-11-27 19:05:02,922 | INFO     | sum of square deviations: 28636836435.283062
[2025-11-27 14:06:23] 2025-11-27 19:05:02,925 | INFO     | sum of deviations: 201595043957.7301
[2025-11-27 14:06:23] 2025-11-27 19:05:02,925 | INFO     | mean x: 1764256468.039823
[2025-11-27 14:06:23] 2025-11-27 19:05:02,925 | INFO     | mean y: 2874618.6261061947
[2025-11-27 14:06:23] 2025-11-27 19:05:02,925 | INFO     | intersect: -12416980522.530033
[2025-11-27 14:06:23] 2025-11-27 19:05:02,926 | INFO     | chi2: 3.4122115245724025
[2025-11-27 14:06:23] 2025-11-27 19:05:02,926 | INFO     | current chi2=3.4122115245724025 (change=1.0977508940281666 %)
[2025-11-27 14:06:23] 2025-11-27 19:05:02,926 | INFO     | left removable region: 30
[2025-11-27 14:06:23] 2025-11-27 19:05:02,926 | INFO     | sum of square deviations: 23974051912.863926
[2025-11-27 14:06:23] 2025-11-27 19:05:02,928 | INFO     | sum of deviations: 303093727616.16907
[2025-11-27 14:06:23] 2025-11-27 19:05:02,929 | INFO     | mean x: 1764256590.0516431
[2025-11-27 14:06:23] 2025-11-27 19:05:02,929 | INFO     | mean y: 2909150.9014084507
[2025-11-27 14:06:23] 2025-11-27 19:05:02,929 | INFO     | intersect: -22301835507.76922
[2025-11-27 14:06:23] 2025-11-27 19:05:02,929 | INFO     | chi2: 0.04066544986230478
[2025-11-27 14:06:23] 2025-11-27 19:05:02,929 | INFO     | current memory leak: 12.64 B/s (using 426 data points, chi2=0.04)
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | could have reported an average CPU frequency of 3797 MHz (19 samples)
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | ..............................
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . Timing measurements:
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . get job = 0 s
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . initial setup = 5 s
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . payload setup = 48 s
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . stage-in = 0 s
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . payload execution = 28520 s
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . stage-out = 7 s
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | . log creation = 0 s
[2025-11-27 14:06:23] 2025-11-27 19:05:02,930 | INFO     | ..............................
[2025-11-27 14:06:23] 2025-11-27 19:05:03,069 | INFO     | 
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | job summary report
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | --------------------------------------------------
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | PanDA job id: 6898271424
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | task id: 47556173
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | errors: (none)
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | pilot state: finished 
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | transexitcode: 0
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | exeerrorcode: 0
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | exeerrordiag: 
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | exitcode: 0
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | exitmsg: OK
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | cpuconsumptiontime: 137605 s
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | nevents: 1000
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | neventsw: 0
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | pid: 2638682
[2025-11-27 14:06:23] 2025-11-27 19:05:03,071 | INFO     | pgrp: 2638682
[2025-11-27 14:06:23] 2025-11-27 19:05:03,072 | INFO     | corecount: 8
[2025-11-27 14:06:23] 2025-11-27 19:05:03,072 | INFO     | event service: False
[2025-11-27 14:06:23] 2025-11-27 19:05:03,072 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 22: 2284371, 33: 2284399, 39: 2284717, 44: 2284873, 28574: 2322444, 28575: 2322443, 28583: 2331521, 28586: 2331577, 28
[2025-11-27 14:06:23] 2025-11-27 19:05:03,072 | INFO     | --------------------------------------------------
[2025-11-27 14:06:23] 2025-11-27 19:05:03,072 | INFO     | 
[2025-11-27 14:06:23] 2025-11-27 19:05:03,072 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 14:06:23] 2025-11-27 19:05:03,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | job 6898271424 has completed (purged errors)
[2025-11-27 14:06:23] 2025-11-27 19:05:03,118 | INFO     | overall cleanup function is called
[2025-11-27 14:06:23] 2025-11-27 19:05:04,138 | INFO     | --- collectZombieJob: --- 10, [2638682]
[2025-11-27 14:06:23] 2025-11-27 19:05:04,138 | INFO     | zombie collector waiting for pid 2638682
[2025-11-27 14:06:23] 2025-11-27 19:05:04,138 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:06:23] 2025-11-27 19:05:04,138 | INFO     | collected zombie processes
[2025-11-27 14:06:23] 2025-11-27 19:05:04,138 | INFO     | will attempt to kill all subprocesses of pid=2638682
[2025-11-27 14:06:23] 2025-11-27 19:05:07,673 | INFO     | process IDs to be killed: [2638682] (in reverse order)
[2025-11-27 14:06:23] 2025-11-27 19:05:07,920 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:06:23] 2025-11-27 19:05:07,921 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:06:23] 2025-11-27 19:05:08,084 | INFO     | did not find any defunct processes belonging to 2638682
[2025-11-27 14:06:23] 2025-11-27 19:05:08,316 | INFO     | did not find any defunct processes belonging to 2638682
[2025-11-27 14:06:23] 2025-11-27 19:05:08,326 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:06:23] 2025-11-27 19:05:08,326 | INFO     | ready for new job
[2025-11-27 14:06:23] 2025-11-27 19:05:08,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:06:23] 2025-11-27 19:05:08,337 | INFO     | ***************************************
[2025-11-27 14:06:23] 2025-11-27 19:05:08,338 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:06:23] 2025-11-27 19:05:08,338 | INFO     | ***************************************
[2025-11-27 14:06:23] 2025-11-27 19:05:08,338 | INFO     | 
[2025-11-27 14:06:23] 2025-11-27 19:05:08,378 | INFO     | architecture information:
[2025-11-27 14:06:23] 2025-11-27 19:05:08,386 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:06:23] 2025-11-27 19:05:08,449 | INFO     | cat /etc/os-release:
[2025-11-27 14:06:23] NAME="CentOS Linux"
[2025-11-27 14:06:23] VERSION="7 (Core)"
[2025-11-27 14:06:23] ID="centos"
[2025-11-27 14:06:23] ID_LIKE="rhel fedora"
[2025-11-27 14:06:23] VERSION_ID="7"
[2025-11-27 14:06:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:06:23] ANSI_COLOR="0;31"
[2025-11-27 14:06:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:06:23] HOME_URL="https://www.centos.org/"
[2025-11-27 14:06:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:06:23] 
[2025-11-27 14:06:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:06:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:06:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:06:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:06:23] 
[2025-11-27 14:06:23] 2025-11-27 19:05:08,450 | INFO     | ***************************************
[2025-11-27 14:06:23] 2025-11-27 19:05:08,953 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 14:06:23] 2025-11-27 19:05:09,096 | INFO     | sufficient remaining disk space (161377943552 B)
[2025-11-27 14:06:23] 2025-11-27 19:05:09,097 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:06:23] 2025-11-27 19:05:09,097 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:06:23] 2025-11-27 19:05:09,097 | INFO     | update_server=False
[2025-11-27 14:06:23] 2025-11-27 19:05:09,097 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:06:23] 2025-11-27 19:05:09,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:06:23] 2025-11-27 19:05:09,300 | INFO     | all job control threads have been joined
[2025-11-27 14:06:23] 2025-11-27 19:05:09,610 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:06:23] 2025-11-27 19:05:09,610 | INFO     | aborting loop
[2025-11-27 14:06:23] 2025-11-27 19:05:09,731 | INFO     | all data control threads have been joined
[2025-11-27 14:06:23] 2025-11-27 19:05:09,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:06:23] 2025-11-27 19:05:09,803 | INFO     | all payload control threads have been joined
[2025-11-27 14:06:23] 2025-11-27 19:05:10,103 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,104 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,126 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,128 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,277 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,306 | INFO     | [job] control thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,616 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,737 | INFO     | [data] control thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:10,813 | INFO     | [payload] control thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:11,131 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:11,147 | INFO     | [job] validate thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:11,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:11,249 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:11,634 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:06:23] 2025-11-27 19:05:11,771 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:15,665 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:06:23] 2025-11-27 19:05:36,202 | INFO     | PID=2608945 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:06:23] 2025-11-27 19:05:36,202 | INFO     | .. there are 87 such processes running
[2025-11-27 14:06:23] 2025-11-27 19:05:36,203 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:06:23] 2025-11-27 19:05:36,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:06:23] 2025-11-27 19:05:36,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:06:23] 2025-11-27 19:05:54,643 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:06:23] 2025-11-27 19:05:56,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620034688832)>', '<ExcThread(monitor, started 140619670333184)>']
[2025-11-27 14:06:23] 2025-11-27 19:05:56,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:06:23] 2025-11-27 19:05:56,330 | INFO     | [monitor] control thread has ended
[2025-11-27 14:06:23] 2025-11-27 19:06:01,304 | INFO     | all workflow threads have been joined
[2025-11-27 14:06:23] 2025-11-27 19:06:01,306 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:06:23] 2025-11-27 19:06:01,306 | INFO     | traces error code: 0
[2025-11-27 14:06:23] 2025-11-27 19:06:01,306 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:06:23] 2025-11-27 19:06:01,947 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:06:23] 2025-11-27 19:06:01,960 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:06:23] 2025-11-27 19:06:01,962 [wrapper] pilotpid: 2608945
[2025-11-27 14:06:23] 2025-11-27 19:06:01,967 [wrapper] Pilot exit status: 0
[2025-11-27 14:06:23] 2025-11-27 19:06:02,002 [wrapper] pandaids: 6898271424
[2025-11-27 14:06:23] 2025-11-27 19:06:02,192 [wrapper] cleanup supervisor_pilot 1970152 2608946
[2025-11-27 14:06:23] 2025-11-27 19:06:02,193 [wrapper] Test setup, not cleaning
[2025-11-27 14:06:23] 2025-11-27 19:06:02,213 [wrapper] apfmon messages muted
[2025-11-27 14:06:23] 2025-11-27 19:06:02,219 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:06:23] 2025-11-27 19:06:02,250 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:06:23]  *** Error codes and diagnostics ***
[2025-11-27 14:06:23]     "exeErrorCode": 0,
[2025-11-27 14:06:23]     "exeErrorDiag": "",
[2025-11-27 14:06:23]     "pilotErrorCode": 0,
[2025-11-27 14:06:23]     "pilotErrorDiag": "",
[2025-11-27 14:06:23]  *** Listing of results directory ***
[2025-11-27 14:06:23] total 1310540
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:05 queuedata.json
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-11-27 14:06:23] -rwx------. 1 boincer umatlas     36292 Nov 26 10:06 runpilot2-wrapper.sh
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas       100 Nov 27 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:06:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 06:05 run_atlas
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas       105 Nov 27 06:05 job.xml
[2025-11-27 14:06:23] -rw-r--r--. 2 boincer umatlas 408539773 Nov 27 06:05 EVNT.47483658._003188.pool.root.1
[2025-11-27 14:06:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:05 start_atlas.sh
[2025-11-27 14:06:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 06:05 shared
[2025-11-27 14:06:23] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 06:05 input.tar.gz
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas         0 Nov 27 06:05 boinc_lockfile
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 06:05 pandaJob.out
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas        57 Nov 27 06:05 setup.sh.local
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas    991564 Nov 27 06:06 agis_schedconf.cvmfs.json
[2025-11-27 14:06:23] drwx------. 5 boincer umatlas      4096 Nov 27 06:07 pilot3
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:57 boinc_task_state.xml
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 14:03 init_data.xml
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas 919246053 Nov 27 14:04 HITS.47556173._001450.pool.root.1
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas      1050 Nov 27 14:04 memory_monitor_summary.json
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas   1707095 Nov 27 14:04 log.47556173._001450.job.log.tgz.1
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas      8582 Nov 27 14:05 heartbeat.json
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas        95 Nov 27 14:05 pilot_heartbeat.json
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas      4825 Nov 27 14:06 pilotlog.txt
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas   3437921 Nov 27 14:06 log.47556173._001450.job.log.1
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas       353 Nov 27 14:06 output.list
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:06 runtime_log
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas   5160960 Nov 27 14:06 result.tar.gz
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 14:06 runtime_log.err
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas       659 Nov 27 14:06 lICODm2GWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmI3MKDmShvOMm.diag
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:06 wrapper_checkpoint.txt
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:06 boinc_mmap_file
[2025-11-27 14:06:23] -rw-r--r--. 1 boincer umatlas     21178 Nov 27 14:06 stderr.txt
[2025-11-27 14:06:23] HITS file was successfully produced:
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas 919246053 Nov 27 14:04 shared/HITS.pool.root.1
[2025-11-27 14:06:23]  *** Contents of shared directory: ***
[2025-11-27 14:06:23] total 1302312
[2025-11-27 14:06:23] -rw-r--r--. 2 boincer umatlas 408539773 Nov 27 06:05 ATLAS.root_0
[2025-11-27 14:06:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:05 start_atlas.sh
[2025-11-27 14:06:23] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 06:05 input.tar.gz
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas 919246053 Nov 27 14:04 HITS.pool.root.1
[2025-11-27 14:06:23] -rw-------. 1 boincer umatlas   5160960 Nov 27 14:06 result.tar.gz
14:06:25 (2580129): run_atlas exited; CPU time 138128.949516
14:06:25 (2580129): called boinc_finish(0)

</stderr_txt>
]]>

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