Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:17:04 (30514): wrapper (7.7.26015): starting
06:17:04 (30514): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:17:04] Arguments: --nthreads 8
[2025-11-27 06:17:04] Threads: 8
[2025-11-27 06:17:04] Checking for CVMFS
[2025-11-27 06:17:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:17:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:17:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:17:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:17:04] 2.11.2.0 13817 546728 298160 153362 3 59 13755744 18432001 2779 130560 8 261895616 99.609 266462971 24621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 06:17:04] CVMFS is ok
[2025-11-27 06:17:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:17:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:17:04] Further information can be found at the LHC@home message board.
[2025-11-27 06:17:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:17:04] Checking for apptainer binary...
[2025-11-27 06:17:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:17:04] Running /usr/bin/apptainer --version
[2025-11-27 06:17:04] apptainer version 1.3.2-1.el7
[2025-11-27 06:17:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:17:05] c-9-29.aglt2.org
[2025-11-27 06:17:05] apptainer works
[2025-11-27 06:17:05] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:17:05] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:17:05] Starting ATLAS job with PandaID=6898271273
[2025-11-27 06:17:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:10:21 (45590): wrapper (7.7.26015): starting
09:10:21 (45590): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 09:10:21] Arguments: --nthreads 8
[2025-11-27 09:10:21] Threads: 8
[2025-11-27 09:10:21] This job has been restarted, cleaning up previous attempt
[2025-11-27 09:10:21] Checking for CVMFS
[2025-11-27 09:10:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:10:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:10:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:10:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:10:21] 2.11.2.0 13817 546901 297656 153366 2 56 13795287 18432001 1 130560 8 262262553 99.610 266466954 24621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-27 09:10:21] CVMFS is ok
[2025-11-27 09:10:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:10:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:10:21] Further information can be found at the LHC@home message board.
[2025-11-27 09:10:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:10:21] Checking for apptainer binary...
[2025-11-27 09:10:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:10:21] Running /usr/bin/apptainer --version
[2025-11-27 09:10:21] apptainer version 1.3.2-1.el7
[2025-11-27 09:10:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:10:22] c-9-29.aglt2.org
[2025-11-27 09:10:22] apptainer works
[2025-11-27 09:10:22] Set ATHENA_PROC_NUMBER=8
[2025-11-27 09:10:22] Set ATHENA_CORE_NUMBER=8
[2025-11-27 09:10:22] Starting ATLAS job with PandaID=6898271273
[2025-11-27 09:10:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 02:35:21]  *** The last 200 lines of the pilot log: ***
[2025-11-28 02:35:21] 2025-11-28 07:34:34,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,356 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 02:35:21] 2025-11-28 07:34:36,361 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9218750000014
[2025-11-28 02:35:21] 2025-11-28 07:34:36,364 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898271273/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,365 | INFO     | extracted standard info from prmon json
[2025-11-28 02:35:21] 2025-11-28 07:34:36,365 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 02:35:21] 2025-11-28 07:34:36,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 02:35:21] 2025-11-28 07:34:36,377 | INFO     | fitting pss+swap vs Time
[2025-11-28 02:35:21] 2025-11-28 07:34:36,378 | INFO     | sum of square deviations: 335883402953.59467
[2025-11-28 02:35:21] 2025-11-28 07:34:36,394 | INFO     | sum of deviations: 1859346157266.795
[2025-11-28 02:35:21] 2025-11-28 07:34:36,394 | INFO     | mean x: 1764283946.7594936
[2025-11-28 02:35:21] 2025-11-28 07:34:36,394 | INFO     | mean y: 2870963.76436222
[2025-11-28 02:35:21] 2025-11-28 07:34:36,394 | INFO     | intersect: -9763656789.284447
[2025-11-28 02:35:21] 2025-11-28 07:34:36,395 | INFO     | chi2: 5.225662478983009
[2025-11-28 02:35:21] 2025-11-28 07:34:36,396 | INFO     | sum of square deviations: 331001679548.1971
[2025-11-28 02:35:21] 2025-11-28 07:34:36,411 | INFO     | sum of deviations: 2157946806374.2217
[2025-11-28 02:35:21] 2025-11-28 07:34:36,412 | INFO     | mean x: 1764283794.2632093
[2025-11-28 02:35:21] 2025-11-28 07:34:36,412 | INFO     | mean y: 2880283.835616438
[2025-11-28 02:35:21] 2025-11-28 07:34:36,412 | INFO     | intersect: -11499268540.801138
[2025-11-28 02:35:21] 2025-11-28 07:34:36,413 | INFO     | chi2: 2.6146127925112475
[2025-11-28 02:35:21] 2025-11-28 07:34:36,413 | INFO     | current chi2=2.6146127925112475 (change=49.96590761406983 %)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,414 | INFO     | sum of square deviations: 326167491917.76935
[2025-11-28 02:35:21] 2025-11-28 07:34:36,414 | INFO     | time since job start (62646s) is within the limit (172800.0s)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,429 | INFO     | sum of deviations: 2233317500775.706
[2025-11-28 02:35:21] 2025-11-28 07:34:36,430 | INFO     | mean x: 1764283641.7669616
[2025-11-28 02:35:21] 2025-11-28 07:34:36,430 | INFO     | mean y: 2882654.7708947887
[2025-11-28 02:35:21] 2025-11-28 07:34:36,430 | INFO     | intersect: -12077430776.598972
[2025-11-28 02:35:21] 2025-11-28 07:34:36,431 | INFO     | chi2: 2.234951097456272
[2025-11-28 02:35:21] 2025-11-28 07:34:36,431 | INFO     | current chi2=2.234951097456272 (change=14.520761779426739 %)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,431 | INFO     | right removable region: 1016
[2025-11-28 02:35:21] 2025-11-28 07:34:36,432 | INFO     | sum of square deviations: 331001266273.7216
[2025-11-28 02:35:21] 2025-11-28 07:34:36,456 | INFO     | sum of deviations: 1617487302492.5933
[2025-11-28 02:35:21] 2025-11-28 07:34:36,456 | INFO     | mean x: 1764284099.2622309
[2025-11-28 02:35:21] 2025-11-28 07:34:36,456 | INFO     | mean y: 2878507.292563601
[2025-11-28 02:35:21] 2025-11-28 07:34:36,457 | INFO     | intersect: -8618560197.979235
[2025-11-28 02:35:21] 2025-11-28 07:34:36,458 | INFO     | chi2: 3.4265246610993105
[2025-11-28 02:35:21] 2025-11-28 07:34:36,458 | INFO     | current chi2=3.4265246610993105 (change=34.42889442476654 %)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,460 | INFO     | sum of square deviations: 326166852396.415
[2025-11-28 02:35:21] 2025-11-28 07:34:36,490 | INFO     | sum of deviations: 1529138709977.8533
[2025-11-28 02:35:21] 2025-11-28 07:34:36,490 | INFO     | mean x: 1764284251.7620451
[2025-11-28 02:35:21] 2025-11-28 07:34:36,491 | INFO     | mean y: 2881294.0324483775
[2025-11-28 02:35:21] 2025-11-28 07:34:36,491 | INFO     | intersect: -8268453836.904691
[2025-11-28 02:35:21] 2025-11-28 07:34:36,492 | INFO     | chi2: 3.317701120241009
[2025-11-28 02:35:21] 2025-11-28 07:34:36,492 | INFO     | current chi2=3.317701120241009 (change=3.1759158804182714 %)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,493 | INFO     | left removable region: 20
[2025-11-28 02:35:21] 2025-11-28 07:34:36,494 | INFO     | sum of square deviations: 306376584384.80707
[2025-11-28 02:35:21] 2025-11-28 07:34:36,524 | INFO     | sum of deviations: 1766284110276.1013
[2025-11-28 02:35:21] 2025-11-28 07:34:36,524 | INFO     | mean x: 1764284221.2710843
[2025-11-28 02:35:21] 2025-11-28 07:34:36,525 | INFO     | mean y: 2897401.0070281127
[2025-11-28 02:35:21] 2025-11-28 07:34:36,525 | INFO     | intersect: -10168334164.548908
[2025-11-28 02:35:21] 2025-11-28 07:34:36,526 | INFO     | chi2: 0.23092653695307536
[2025-11-28 02:35:21] 2025-11-28 07:34:36,526 | INFO     | current memory leak: 5.77 B/s (using 996 data points, chi2=0.23)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,528 | INFO     | could have reported an average CPU frequency of 3000 MHz (37 samples)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,528 | INFO     | ..............................
[2025-11-28 02:35:21] 2025-11-28 07:34:36,528 | INFO     | . Timing measurements:
[2025-11-28 02:35:21] 2025-11-28 07:34:36,528 | INFO     | . get job = 0 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,528 | INFO     | . initial setup = 0 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,528 | INFO     | . payload setup = 4 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,528 | INFO     | . stage-in = 0 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,529 | INFO     | . payload execution = 62612 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,529 | INFO     | . stage-out = 3 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,529 | INFO     | . log creation = 0 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,529 | INFO     | ..............................
[2025-11-28 02:35:21] 2025-11-28 07:34:36,594 | INFO     | 
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | job summary report
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | --------------------------------------------------
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | PanDA job id: 6898271273
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | task id: 47556173
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | errors: (none)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | pilot state: finished 
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | transexitcode: 0
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | exeerrorcode: 0
[2025-11-28 02:35:21] 2025-11-28 07:34:36,595 | INFO     | exeerrordiag: 
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | exitcode: 0
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | exitmsg: OK
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | cpuconsumptiontime: 481290 s
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | nevents: 1000
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | neventsw: 0
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | pid: 33798
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | pgrp: 33798
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | corecount: 8
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | event service: False
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | sizes: {0: 2284315, 3: 2284577, 11: 2284605, 62619: 2337520, 62620: 2337519, 62624: 2346569, 62625: 2346753, 62631: 2346999}
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | --------------------------------------------------
[2025-11-28 02:35:21] 2025-11-28 07:34:36,596 | INFO     | 
[2025-11-28 02:35:21] 2025-11-28 07:34:36,597 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 02:35:21] 2025-11-28 07:34:36,613 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,613 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,613 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,613 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,614 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,615 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,615 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 02:35:21] 2025-11-28 07:34:36,615 | INFO     | job 6898271273 has completed (purged errors)
[2025-11-28 02:35:21] 2025-11-28 07:34:36,615 | INFO     | overall cleanup function is called
[2025-11-28 02:35:21] 2025-11-28 07:34:37,628 | INFO     | --- collectZombieJob: --- 10, [33798]
[2025-11-28 02:35:21] 2025-11-28 07:34:37,628 | INFO     | zombie collector waiting for pid 33798
[2025-11-28 02:35:21] 2025-11-28 07:34:37,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 02:35:21] 2025-11-28 07:34:37,629 | INFO     | collected zombie processes
[2025-11-28 02:35:21] 2025-11-28 07:34:37,629 | INFO     | will attempt to kill all subprocesses of pid=33798
[2025-11-28 02:35:21] 2025-11-28 07:34:37,714 | INFO     | PID=11708 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-28 02:35:21] 2025-11-28 07:34:37,715 | INFO     | .. there are 4 such processes running
[2025-11-28 02:35:21] 2025-11-28 07:34:37,841 | INFO     | process IDs to be killed: [33798] (in reverse order)
[2025-11-28 02:35:21] 2025-11-28 07:34:37,891 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 02:35:21] 2025-11-28 07:34:37,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 02:35:21] 2025-11-28 07:34:37,900 | INFO     | did not find any defunct processes belonging to 33798
[2025-11-28 02:35:21] 2025-11-28 07:34:37,907 | INFO     | did not find any defunct processes belonging to 33798
[2025-11-28 02:35:21] 2025-11-28 07:34:37,909 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 02:35:21] 2025-11-28 07:34:37,909 | INFO     | ready for new job
[2025-11-28 02:35:21] 2025-11-28 07:34:37,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 02:35:21] 2025-11-28 07:34:37,914 | INFO     | ***************************************
[2025-11-28 02:35:21] 2025-11-28 07:34:37,914 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 02:35:21] 2025-11-28 07:34:37,914 | INFO     | ***************************************
[2025-11-28 02:35:21] 2025-11-28 07:34:37,914 | INFO     | 
[2025-11-28 02:35:21] 2025-11-28 07:34:37,916 | INFO     | architecture information:
[2025-11-28 02:35:21] 2025-11-28 07:34:37,917 | INFO     | executing command: cat /etc/os-release
[2025-11-28 02:35:21] 2025-11-28 07:34:37,933 | INFO     | cat /etc/os-release:
[2025-11-28 02:35:21] NAME="CentOS Linux"
[2025-11-28 02:35:21] VERSION="7 (Core)"
[2025-11-28 02:35:21] ID="centos"
[2025-11-28 02:35:21] ID_LIKE="rhel fedora"
[2025-11-28 02:35:21] VERSION_ID="7"
[2025-11-28 02:35:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 02:35:21] ANSI_COLOR="0;31"
[2025-11-28 02:35:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 02:35:21] HOME_URL="https://www.centos.org/"
[2025-11-28 02:35:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 02:35:21] 
[2025-11-28 02:35:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 02:35:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 02:35:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 02:35:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 02:35:21] 
[2025-11-28 02:35:21] 2025-11-28 07:34:37,933 | INFO     | ***************************************
[2025-11-28 02:35:21] 2025-11-28 07:34:38,436 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 02:35:21] 2025-11-28 07:34:38,453 | INFO     | sufficient remaining disk space (102538149888 B)
[2025-11-28 02:35:21] 2025-11-28 07:34:38,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 02:35:21] 2025-11-28 07:34:38,454 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 02:35:21] 2025-11-28 07:34:38,454 | INFO     | update_server=False
[2025-11-28 02:35:21] 2025-11-28 07:34:38,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 02:35:21] 2025-11-28 07:34:38,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:35:21] 2025-11-28 07:34:38,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 02:35:21] 2025-11-28 07:34:38,455 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-28 02:35:21] 2025-11-28 07:34:38,455 | INFO     | aborting loop
[2025-11-28 02:35:21] 2025-11-28 07:34:38,456 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 02:35:21] 2025-11-28 07:34:38,456 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 02:35:21] 2025-11-28 07:34:38,456 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 02:35:21] 2025-11-28 07:34:38,984 | INFO     | all data control threads have been joined
[2025-11-28 02:35:21] 2025-11-28 07:34:39,157 | INFO     | all payload control threads have been joined
[2025-11-28 02:35:21] 2025-11-28 07:34:39,460 | INFO     | [job] retrieve thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:39,460 | INFO     | [job] queue monitor thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:39,462 | INFO     | [job] job monitor thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:39,534 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:39,601 | INFO     | all job control threads have been joined
[2025-11-28 02:35:21] 2025-11-28 07:34:39,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 02:35:21] 2025-11-28 07:34:39,960 | INFO     | [payload] failed_post thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:39,989 | INFO     | [data] control thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,163 | INFO     | [payload] control thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,429 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,537 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,557 | INFO     | [payload] validate_post thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,595 | INFO     | [data] copytool_in thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,609 | INFO     | [job] control thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,610 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:40,610 | INFO     | [job] validate thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:41,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 02:35:21] 2025-11-28 07:34:41,923 | INFO     | [data] copytool_out thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:34:45,036 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 02:35:21] 2025-11-28 07:35:15,469 | INFO     | [monitor] cgroup control has ended
[2025-11-28 02:35:21] 2025-11-28 07:35:16,635 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140662460487488)>', '<ExcThread(monitor, started 140662024419072)>']
[2025-11-28 02:35:21] 2025-11-28 07:35:16,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 02:35:21] 2025-11-28 07:35:16,645 | INFO     | [monitor] control thread has ended
[2025-11-28 02:35:21] 2025-11-28 07:35:21,656 | INFO     | all workflow threads have been joined
[2025-11-28 02:35:21] 2025-11-28 07:35:21,657 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 02:35:21] 2025-11-28 07:35:21,657 | INFO     | traces error code: 0
[2025-11-28 02:35:21] 2025-11-28 07:35:21,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 02:35:21] 2025-11-28 07:35:21,762 [wrapper] ==== pilot stdout END ====
[2025-11-28 02:35:21] 2025-11-28 07:35:21,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 02:35:21] 2025-11-28 07:35:21,766 [wrapper] pilotpid: 11708
[2025-11-28 02:35:21] 2025-11-28 07:35:21,768 [wrapper] Pilot exit status: 0
[2025-11-28 02:35:21] 2025-11-28 07:35:21,776 [wrapper] pandaids: 6898271273 6898271273
[2025-11-28 02:35:21] 2025-11-28 07:35:21,812 [wrapper] cleanup supervisor_pilot 33643 11709
[2025-11-28 02:35:21] 2025-11-28 07:35:21,814 [wrapper] Test setup, not cleaning
[2025-11-28 02:35:21] 2025-11-28 07:35:21,816 [wrapper] apfmon messages muted
[2025-11-28 02:35:21] 2025-11-28 07:35:21,818 [wrapper] ==== wrapper stdout END ====
[2025-11-28 02:35:21] 2025-11-28 07:35:21,820 [wrapper] ==== wrapper stderr END ====
[2025-11-28 02:35:21]  *** Error codes and diagnostics ***
[2025-11-28 02:35:21]     "exeErrorCode": 0,
[2025-11-28 02:35:21]     "exeErrorDiag": "",
[2025-11-28 02:35:21]     "pilotErrorCode": 0,
[2025-11-28 02:35:21]     "pilotErrorDiag": "",
[2025-11-28 02:35:21]  *** Listing of results directory ***
[2025-11-28 02:35:21] total 1729920
[2025-11-28 02:35:21] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 09:19 pilot3.tar.gz
[2025-11-28 02:35:21] -rwx------ 1 boincer umatlas     36292 Nov 26 09:52 runpilot2-wrapper.sh
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 09:52 queuedata.json
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas       100 Nov 27 06:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 02:35:21] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 06:17 run_atlas
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas       105 Nov 27 06:17 job.xml
[2025-11-28 02:35:21] -rw-r--r-- 3 boincer umatlas 408618982 Nov 27 06:17 EVNT.47483658._003187.pool.root.1
[2025-11-28 02:35:21] -rw-r--r-- 3 boincer umatlas 408618982 Nov 27 06:17 ATLAS.root_0
[2025-11-28 02:35:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:17 start_atlas.sh
[2025-11-28 02:35:21] drwxrwx--x 2 boincer umatlas      4096 Nov 27 06:17 shared
[2025-11-28 02:35:21] -rw-r--r-- 2 boincer umatlas    590104 Nov 27 06:17 input.tar.gz
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas         0 Nov 27 06:17 boinc_lockfile
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas      2786 Nov 27 09:10 pandaJob.out
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas        57 Nov 27 09:10 setup.sh.local
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas    991588 Nov 27 09:10 agis_schedconf.cvmfs.json
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas       533 Nov 28 02:25 boinc_task_state.xml
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas      6038 Nov 28 02:31 init_data.xml
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas 928631669 Nov 28 02:33 HITS.47556173._001440.pool.root.1
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas        96 Nov 28 02:33 pilot_heartbeat.json
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas      1061 Nov 28 02:34 memory_monitor_summary.json
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas   1516240 Nov 28 02:34 agis_ddmendpoints.agis.ALL.json
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas   2221090 Nov 28 02:34 log.47556173._001440.job.log.tgz.1
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas      8648 Nov 28 02:34 heartbeat.json
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 02:35 boinc_mmap_file
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas        29 Nov 28 02:35 wrapper_checkpoint.txt
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas      4553 Nov 28 02:35 pilotlog.txt
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas   8600638 Nov 28 02:35 log.47556173._001440.job.log.1
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas       353 Nov 28 02:35 output.list
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas       620 Nov 28 02:35 runtime_log
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas  10844160 Nov 28 02:35 result.tar.gz
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas       790 Nov 28 02:35 UYRNDm93Vi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo2MKDmZk4CEn.diag
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas      9418 Nov 28 02:35 runtime_log.err
[2025-11-28 02:35:21] -rw-r--r-- 1 boincer umatlas     23500 Nov 28 02:35 stderr.txt
[2025-11-28 02:35:21] HITS file was successfully produced:
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas 928631669 Nov 28 02:33 shared/HITS.pool.root.1
[2025-11-28 02:35:21]  *** Contents of shared directory: ***
[2025-11-28 02:35:21] total 1317104
[2025-11-28 02:35:21] -rw-r--r-- 3 boincer umatlas 408618982 Nov 27 06:17 ATLAS.root_0
[2025-11-28 02:35:21] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 06:17 start_atlas.sh
[2025-11-28 02:35:21] -rw-r--r-- 2 boincer umatlas    590104 Nov 27 06:17 input.tar.gz
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas 928631669 Nov 28 02:33 HITS.pool.root.1
[2025-11-28 02:35:21] -rw------- 1 boincer umatlas  10844160 Nov 28 02:35 result.tar.gz
02:35:23 (45590): run_atlas exited; CPU time 481082.863722
02:35:23 (45590): called boinc_finish(0)

</stderr_txt>
]]>

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