Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:45:17 (2926795): wrapper (7.7.26015): starting
06:45:17 (2926795): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:45:17] Arguments: --nthreads 8
[2025-11-27 06:45:17] Threads: 8
[2025-11-27 06:45:17] Checking for CVMFS
[2025-11-27 06:45:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:45:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:45:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:45:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:45:20] 2.13.3.0 22787 31396 251124 153362 1 674 37988800 40960000 65575 16776704 0 456344301 99.749 277723554 47707 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 06:45:20] CVMFS is ok
[2025-11-27 06:45:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:45:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:45:20] Further information can be found at the LHC@home message board.
[2025-11-27 06:45:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:45:20] Checking for apptainer binary...
[2025-11-27 06:45:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:45:20] Running /usr/bin/apptainer --version
[2025-11-27 06:45:20] apptainer version 1.4.4-1.el9
[2025-11-27 06:45:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:45:20] c8-6-11.aglt2.org
[2025-11-27 06:45:20] apptainer works
[2025-11-27 06:45:20] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:45:20] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:45:21] Starting ATLAS job with PandaID=6898271188
[2025-11-27 06:45:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:42:15]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:42:15] 2025-11-27 22:41:25,752 | INFO     | monitor loop #2179: job 0:6898271188 is in state 'finished'
[2025-11-27 17:42:15] 2025-11-27 22:41:25,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:42:15] 2025-11-27 22:41:26,660 | INFO     | time since job start (39273s) is within the limit (172800.0s)
[2025-11-27 17:42:15] 2025-11-27 22:41:28,269 | INFO     | monitor loop #2180: job 0:6898271188 is in state 'finished'
[2025-11-27 17:42:15] 2025-11-27 22:41:28,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:42:15] 2025-11-27 22:41:28,669 | INFO     | time since job start (39275s) is within the limit (172800.0s)
[2025-11-27 17:42:15] 2025-11-27 22:41:30,676 | INFO     | time since job start (39277s) is within the limit (172800.0s)
[2025-11-27 17:42:15] 2025-11-27 22:41:30,789 | INFO     | monitor loop #2181: job 0:6898271188 is in state 'finished'
[2025-11-27 17:42:15] 2025-11-27 22:41:30,801 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:42:15] 2025-11-27 22:41:32,684 | INFO     | time since job start (39279s) is within the limit (172800.0s)
[2025-11-27 17:42:15] 2025-11-27 22:41:33,308 | INFO     | monitor loop #2182: job 0:6898271188 is in state 'finished'
[2025-11-27 17:42:15] 2025-11-27 22:41:33,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:42:15] 2025-11-27 22:41:34,698 | INFO     | time since job start (39281s) is within the limit (172800.0s)
[2025-11-27 17:42:15] 2025-11-27 22:41:35,821 | INFO     | monitor loop #2183: job 0:6898271188 is in state 'finished'
[2025-11-27 17:42:15] 2025-11-27 22:41:35,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,013 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:42:15] 2025-11-27 22:41:37,117 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3797.7759453124995
[2025-11-27 17:42:15] 2025-11-27 22:41:37,278 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6898271188/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,394 | INFO     | extracted standard info from prmon json
[2025-11-27 17:42:15] 2025-11-27 22:41:37,394 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:42:15] 2025-11-27 22:41:37,394 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:42:15] 2025-11-27 22:41:37,443 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:42:15] 2025-11-27 22:41:37,443 | INFO     | sum of square deviations: 81666690639.56009
[2025-11-27 17:42:15] 2025-11-27 22:41:37,464 | INFO     | sum of deviations: 537779779727.63715
[2025-11-27 17:42:15] 2025-11-27 22:41:37,464 | INFO     | mean x: 1764263728.24805
[2025-11-27 17:42:15] 2025-11-27 22:41:37,464 | INFO     | mean y: 2820324.109204368
[2025-11-27 17:42:15] 2025-11-27 22:41:37,464 | INFO     | intersect: -11614956173.608898
[2025-11-27 17:42:15] 2025-11-27 22:41:37,465 | INFO     | chi2: 17.990585192091277
[2025-11-27 17:42:15] 2025-11-27 22:41:37,468 | INFO     | sum of square deviations: 79770694426.711
[2025-11-27 17:42:15] 2025-11-27 22:41:37,479 | INFO     | sum of deviations: 757721020253.0786
[2025-11-27 17:42:15] 2025-11-27 22:41:37,479 | INFO     | mean x: 1764263575.7578616
[2025-11-27 17:42:15] 2025-11-27 22:41:37,479 | INFO     | mean y: 2838013.2342767296
[2025-11-27 17:42:15] 2025-11-27 22:41:37,479 | INFO     | intersect: -16755441530.72518
[2025-11-27 17:42:15] 2025-11-27 22:41:37,479 | INFO     | chi2: 14.401132796937233
[2025-11-27 17:42:15] 2025-11-27 22:41:37,480 | INFO     | current chi2=14.401132796937233 (change=19.951837902037674 %)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,493 | INFO     | right removable region: 635
[2025-11-27 17:42:15] 2025-11-27 22:41:37,494 | INFO     | sum of square deviations: 79770206426.71095
[2025-11-27 17:42:15] 2025-11-27 22:41:37,512 | INFO     | sum of deviations: 279249704633.6161
[2025-11-27 17:42:15] 2025-11-27 22:41:37,512 | INFO     | mean x: 1764263880.7578616
[2025-11-27 17:42:15] 2025-11-27 22:41:37,512 | INFO     | mean y: 2841109.2767295595
[2025-11-27 17:42:15] 2025-11-27 22:41:37,512 | INFO     | intersect: -6173276387.047314
[2025-11-27 17:42:15] 2025-11-27 22:41:37,512 | INFO     | chi2: 13.588387627572462
[2025-11-27 17:42:15] 2025-11-27 22:41:37,512 | INFO     | current chi2=13.588387627572462 (change=24.46945175776737 %)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,512 | INFO     | left removable region: 10
[2025-11-27 17:42:15] 2025-11-27 22:41:37,513 | INFO     | sum of square deviations: 75702327774.0
[2025-11-27 17:42:15] 2025-11-27 22:41:37,563 | INFO     | sum of deviations: 339500275655.19965
[2025-11-27 17:42:15] 2025-11-27 22:41:37,563 | INFO     | mean x: 1764263850.28
[2025-11-27 17:42:15] 2025-11-27 22:41:37,563 | INFO     | mean y: 2881002.816
[2025-11-27 17:42:15] 2025-11-27 22:41:37,563 | INFO     | intersect: -7909267554.711972
[2025-11-27 17:42:15] 2025-11-27 22:41:37,574 | INFO     | chi2: 6.0713249702256125
[2025-11-27 17:42:15] 2025-11-27 22:41:37,574 | INFO     | current memory leak: 4.48 B/s (using 625 data points, chi2=6.07)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | could have reported an average CPU frequency of 3798 MHz (25 samples)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | ..............................
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | . Timing measurements:
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | . get job = 0 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | . initial setup = 5 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | . payload setup = 58 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | . stage-in = 0 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | . payload execution = 39090 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,577 | INFO     | . stage-out = 6 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,578 | INFO     | . log creation = 1 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,578 | INFO     | ..............................
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | 
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | job summary report
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | --------------------------------------------------
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | PanDA job id: 6898271188
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | task id: 47556161
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | errors: (none)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | pilot state: finished 
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | transexitcode: 0
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | exeerrorcode: 0
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | exeerrordiag: 
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | exitcode: 0
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | exitmsg: OK
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | cpuconsumptiontime: 136261 s
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | nevents: 1000
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | neventsw: 0
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | pid: 2958984
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | pgrp: 2958984
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | corecount: 8
[2025-11-27 17:42:15] 2025-11-27 22:41:37,804 | INFO     | event service: False
[2025-11-27 17:42:15] 2025-11-27 22:41:37,805 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 24: 2284427, 34: 2284455, 45: 2284611, 49: 2284901, 56: 2284929, 39153: 2327403, 39159: 2336397, 39160: 23
[2025-11-27 17:42:15] 2025-11-27 22:41:37,805 | INFO     | --------------------------------------------------
[2025-11-27 17:42:15] 2025-11-27 22:41:37,805 | INFO     | 
[2025-11-27 17:42:15] 2025-11-27 22:41:37,805 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 17:42:15] 2025-11-27 22:41:37,890 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,892 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,892 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,892 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,893 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | job 6898271188 has completed (purged errors)
[2025-11-27 17:42:15] 2025-11-27 22:41:37,906 | INFO     | overall cleanup function is called
[2025-11-27 17:42:15] 2025-11-27 22:41:38,510 | INFO     | PID=2941895 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:42:15] 2025-11-27 22:41:38,510 | INFO     | .. there are 85 such processes running
[2025-11-27 17:42:15] 2025-11-27 22:41:38,937 | INFO     | --- collectZombieJob: --- 10, [2958984]
[2025-11-27 17:42:15] 2025-11-27 22:41:38,937 | INFO     | zombie collector waiting for pid 2958984
[2025-11-27 17:42:15] 2025-11-27 22:41:38,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:42:15] 2025-11-27 22:41:38,937 | INFO     | collected zombie processes
[2025-11-27 17:42:15] 2025-11-27 22:41:38,937 | INFO     | will attempt to kill all subprocesses of pid=2958984
[2025-11-27 17:42:15] 2025-11-27 22:41:40,672 | INFO     | process IDs to be killed: [2958984] (in reverse order)
[2025-11-27 17:42:15] 2025-11-27 22:41:41,218 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:42:15] 2025-11-27 22:41:41,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:42:15] 2025-11-27 22:41:41,286 | INFO     | did not find any defunct processes belonging to 2958984
[2025-11-27 17:42:15] 2025-11-27 22:41:41,447 | INFO     | did not find any defunct processes belonging to 2958984
[2025-11-27 17:42:15] 2025-11-27 22:41:41,486 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:42:15] 2025-11-27 22:41:41,487 | INFO     | ready for new job
[2025-11-27 17:42:15] 2025-11-27 22:41:41,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:42:15] 2025-11-27 22:41:41,491 | INFO     | ***************************************
[2025-11-27 17:42:15] 2025-11-27 22:41:41,491 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:42:15] 2025-11-27 22:41:41,491 | INFO     | ***************************************
[2025-11-27 17:42:15] 2025-11-27 22:41:41,491 | INFO     | 
[2025-11-27 17:42:15] 2025-11-27 22:41:41,521 | INFO     | architecture information:
[2025-11-27 17:42:15] 2025-11-27 22:41:41,535 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:42:15] 2025-11-27 22:41:41,653 | INFO     | cat /etc/os-release:
[2025-11-27 17:42:15] NAME="CentOS Linux"
[2025-11-27 17:42:15] VERSION="7 (Core)"
[2025-11-27 17:42:15] ID="centos"
[2025-11-27 17:42:15] ID_LIKE="rhel fedora"
[2025-11-27 17:42:15] VERSION_ID="7"
[2025-11-27 17:42:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:42:15] ANSI_COLOR="0;31"
[2025-11-27 17:42:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:42:15] HOME_URL="https://www.centos.org/"
[2025-11-27 17:42:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:42:15] 
[2025-11-27 17:42:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:42:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:42:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:42:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:42:15] 
[2025-11-27 17:42:15] 2025-11-27 22:41:41,653 | INFO     | ***************************************
[2025-11-27 17:42:15] 2025-11-27 22:41:42,157 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 17:42:15] 2025-11-27 22:41:42,280 | INFO     | sufficient remaining disk space (163220291584 B)
[2025-11-27 17:42:15] 2025-11-27 22:41:42,280 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:42:15] 2025-11-27 22:41:42,281 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:42:15] 2025-11-27 22:41:42,281 | INFO     | update_server=False
[2025-11-27 17:42:15] 2025-11-27 22:41:42,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:42:15] 2025-11-27 22:41:42,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:42:15] 2025-11-27 22:41:42,281 | INFO     | aborting loop
[2025-11-27 17:42:15] 2025-11-27 22:41:42,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:42:15] 2025-11-27 22:41:42,580 | INFO     | all job control threads have been joined
[2025-11-27 17:42:15] 2025-11-27 22:41:42,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:42:15] 2025-11-27 22:41:42,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:42:15] 2025-11-27 22:41:43,287 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:43,287 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:43,399 | INFO     | all data control threads have been joined
[2025-11-27 17:42:15] 2025-11-27 22:41:43,409 | INFO     | all payload control threads have been joined
[2025-11-27 17:42:15] 2025-11-27 22:41:43,586 | INFO     | [job] control thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:43,848 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:43,871 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:43,931 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,041 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,041 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,042 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,120 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,238 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,375 | INFO     | [job] validate thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,405 | INFO     | [data] control thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,415 | INFO     | [payload] control thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:44,483 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:41:46,978 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:42:15] 2025-11-27 22:42:03,089 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:42:15] 2025-11-27 22:42:04,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140179573765952)>', '<ExcThread(monitor, started 140179293570816)>']
[2025-11-27 17:42:15] 2025-11-27 22:42:09,622 | INFO     | all workflow threads have been joined
[2025-11-27 17:42:15] 2025-11-27 22:42:09,622 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:42:15] 2025-11-27 22:42:09,622 | INFO     | traces error code: 0
[2025-11-27 17:42:15] 2025-11-27 22:42:09,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:42:15] 2025-11-27 22:42:13,587 | INFO     | PID=2941895 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:42:15] 2025-11-27 22:42:13,596 | INFO     | .. there are 85 such processes running
[2025-11-27 17:42:15] 2025-11-27 22:42:13,596 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:42:15] 2025-11-27 22:42:13,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:42:15] 2025-11-27 22:42:13,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:42:15] 2025-11-27 22:42:13,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:42:15] 2025-11-27 22:42:13,597 | INFO     | [monitor] control thread has ended
[2025-11-27 17:42:15] 2025-11-27 22:42:13,838 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:42:15] 2025-11-27 22:42:13,859 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:42:15] 2025-11-27 22:42:13,879 [wrapper] pilotpid: 2941895
[2025-11-27 17:42:15] 2025-11-27 22:42:13,894 [wrapper] Pilot exit status: 0
[2025-11-27 17:42:15] 2025-11-27 22:42:13,957 [wrapper] pandaids: 6898271188
[2025-11-27 17:42:15] 2025-11-27 22:42:14,373 [wrapper] cleanup supervisor_pilot 3714397 2941896
[2025-11-27 17:42:15] 2025-11-27 22:42:14,401 [wrapper] Test setup, not cleaning
[2025-11-27 17:42:15] 2025-11-27 22:42:14,418 [wrapper] apfmon messages muted
[2025-11-27 17:42:15] 2025-11-27 22:42:14,443 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:42:15] 2025-11-27 22:42:14,452 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:42:15]  *** Error codes and diagnostics ***
[2025-11-27 17:42:15]     "exeErrorCode": 0,
[2025-11-27 17:42:15]     "exeErrorDiag": "",
[2025-11-27 17:42:15]     "pilotErrorCode": 0,
[2025-11-27 17:42:15]     "pilotErrorDiag": "",
[2025-11-27 17:42:15]  *** Listing of results directory ***
[2025-11-27 17:42:15] total 1316268
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 09:19 pilot3.tar.gz
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 09:47 queuedata.json
[2025-11-27 17:42:15] -rwx------. 1 boincer umatlas     36292 Nov 26 09:49 runpilot2-wrapper.sh
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas       100 Nov 27 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:42:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 06:45 run_atlas
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas       105 Nov 27 06:45 job.xml
[2025-11-27 17:42:15] -rw-r--r--. 2 boincer umatlas 410716070 Nov 27 06:45 EVNT.47483658._002525.pool.root.1
[2025-11-27 17:42:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:45 start_atlas.sh
[2025-11-27 17:42:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 06:45 shared
[2025-11-27 17:42:15] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 06:45 input.tar.gz
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas         0 Nov 27 06:45 boinc_lockfile
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 06:45 pandaJob.out
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas        57 Nov 27 06:45 setup.sh.local
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas    991572 Nov 27 06:46 agis_schedconf.cvmfs.json
[2025-11-27 17:42:15] drwx------. 5 boincer umatlas      4096 Nov 27 06:46 pilot3
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:25 boinc_task_state.xml
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas 920077550 Nov 27 17:40 HITS.47556161._005080.pool.root.1
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas      7174 Nov 27 17:40 init_data.xml
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas      1052 Nov 27 17:40 memory_monitor_summary.json
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas   1840506 Nov 27 17:41 log.47556161._005080.job.log.tgz.1
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas      8583 Nov 27 17:41 heartbeat.json
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas        95 Nov 27 17:42 pilot_heartbeat.json
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas       823 Nov 27 17:42 pilotlog.txt
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:42 boinc_mmap_file
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas   4731138 Nov 27 17:42 log.47556161._005080.job.log.1
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas       353 Nov 27 17:42 output.list
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:42 runtime_log
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas   6594560 Nov 27 17:42 result.tar.gz
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas       659 Nov 27 17:42 TkHNDm30Vi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH2MKDmBpzdun.diag
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 17:42 runtime_log.err
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:42 wrapper_checkpoint.txt
[2025-11-27 17:42:15] -rw-r--r--. 1 boincer umatlas     21879 Nov 27 17:42 stderr.txt
[2025-11-27 17:42:15] HITS file was successfully produced:
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas 920077550 Nov 27 17:40 shared/HITS.pool.root.1
[2025-11-27 17:42:15]  *** Contents of shared directory: ***
[2025-11-27 17:42:15] total 1306648
[2025-11-27 17:42:15] -rw-r--r--. 2 boincer umatlas 410716070 Nov 27 06:45 ATLAS.root_0
[2025-11-27 17:42:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 06:45 start_atlas.sh
[2025-11-27 17:42:15] -rw-r--r--. 2 boincer umatlas    590106 Nov 27 06:45 input.tar.gz
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas 920077550 Nov 27 17:40 HITS.pool.root.1
[2025-11-27 17:42:15] -rw-------. 1 boincer umatlas   6594560 Nov 27 17:42 result.tar.gz
17:42:17 (2926795): run_atlas exited; CPU time 137166.247300
17:42:17 (2926795): called boinc_finish(0)

</stderr_txt>
]]>

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