Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:59:11 (7252): wrapper (7.7.26015): starting
06:59:11 (7252): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 06:59:11] Arguments: --nthreads 8
[2025-11-27 06:59:11] Threads: 8
[2025-11-27 06:59:11] Checking for CVMFS
[2025-11-27 06:59:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 06:59:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 06:59:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 06:59:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 06:59:11] 2.11.2.0 11495 119111 134664 153362 2 90 11522537 18432001 1865 130560 0 85298174 99.975 5045065 25304 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 06:59:11] CVMFS is ok
[2025-11-27 06:59:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 06:59:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 06:59:11] Further information can be found at the LHC@home message board.
[2025-11-27 06:59:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 06:59:11] Checking for apptainer binary...
[2025-11-27 06:59:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 06:59:11] Running /usr/bin/apptainer --version
[2025-11-27 06:59:11] apptainer version 1.3.2-1.el7
[2025-11-27 06:59:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 06:59:12] c-206-31.aglt2.org
[2025-11-27 06:59:13] apptainer works
[2025-11-27 06:59:13] Set ATHENA_PROC_NUMBER=8
[2025-11-27 06:59:13] Set ATHENA_CORE_NUMBER=8
[2025-11-27 06:59:13] Starting ATLAS job with PandaID=6892522727
[2025-11-27 06:59:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:40:03 (7252): BOINC client no longer exists - exiting
10:40:03 (7252): timer handler: client dead, exiting
10:48:17 (2069): wrapper (7.7.26015): starting
10:48:17 (2069): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 10:48:17] Arguments: --nthreads 8
[2025-11-27 10:48:17] Threads: 8
[2025-11-27 10:48:17] This job has been restarted, cleaning up previous attempt
[2025-11-27 10:48:17] Checking for CVMFS
[2025-11-27 10:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 10:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 10:48:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 10:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 10:48:17] 2.11.2.0 11495 119341 132288 153371 1 57 11575697 18432001 1 130560 0 85514655 99.975 5054147 25318 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 10:48:17] CVMFS is ok
[2025-11-27 10:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 10:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 10:48:17] Further information can be found at the LHC@home message board.
[2025-11-27 10:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 10:48:17] Checking for apptainer binary...
[2025-11-27 10:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 10:48:17] Running /usr/bin/apptainer --version
[2025-11-27 10:48:17] apptainer version 1.3.2-1.el7
[2025-11-27 10:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 10:48:18] c-206-31.aglt2.org
[2025-11-27 10:48:18] apptainer works
[2025-11-27 10:48:18] Set ATHENA_PROC_NUMBER=8
[2025-11-27 10:48:18] Set ATHENA_CORE_NUMBER=8
[2025-11-27 10:48:18] Starting ATLAS job with PandaID=6892522727
[2025-11-27 10:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:30:35]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:30:35] 2025-11-28 11:30:03,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:30:35] 2025-11-28 11:30:03,860 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-28 06:30:35] 2025-11-28 11:30:03,866 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2139.5
[2025-11-28 06:30:35] 2025-11-28 11:30:03,870 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892522727/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:30:35] 2025-11-28 11:30:03,871 | INFO     | extracted standard info from prmon json
[2025-11-28 06:30:35] 2025-11-28 11:30:03,871 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:30:35] 2025-11-28 11:30:03,871 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:30:35] 2025-11-28 11:30:03,887 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:30:35] 2025-11-28 11:30:03,888 | INFO     | sum of square deviations: 486514669229.13477
[2025-11-28 06:30:35] 2025-11-28 11:30:03,914 | INFO     | sum of deviations: 2449826976653.66
[2025-11-28 06:30:35] 2025-11-28 11:30:03,915 | INFO     | mean x: 1764293951.0576591
[2025-11-28 06:30:35] 2025-11-28 11:30:03,915 | INFO     | mean y: 2863650.617039587
[2025-11-28 06:30:35] 2025-11-28 11:30:03,915 | INFO     | intersect: -8881174569.435652
[2025-11-28 06:30:35] 2025-11-28 11:30:03,916 | INFO     | chi2: 5.38540698421925
[2025-11-28 06:30:35] 2025-11-28 11:30:03,917 | INFO     | sum of square deviations: 480261531015.07574
[2025-11-28 06:30:35] 2025-11-28 11:30:03,943 | INFO     | sum of deviations: 2785508558380.566
[2025-11-28 06:30:35] 2025-11-28 11:30:03,943 | INFO     | mean x: 1764293798.560069
[2025-11-28 06:30:35] 2025-11-28 11:30:03,943 | INFO     | mean y: 2871830.9127052724
[2025-11-28 06:30:35] 2025-11-28 11:30:03,943 | INFO     | intersect: -10230001630.760748
[2025-11-28 06:30:35] 2025-11-28 11:30:03,944 | INFO     | chi2: 2.792806831798104
[2025-11-28 06:30:35] 2025-11-28 11:30:03,944 | INFO     | current chi2=2.792806831798104 (change=48.14121124026819 %)
[2025-11-28 06:30:35] 2025-11-28 11:30:03,945 | INFO     | sum of square deviations: 474062207763.5
[2025-11-28 06:30:35] 2025-11-28 11:30:03,971 | INFO     | sum of deviations: 2894698400261.375
[2025-11-28 06:30:35] 2025-11-28 11:30:03,971 | INFO     | mean x: 1764293646.0625
[2025-11-28 06:30:35] 2025-11-28 11:30:03,971 | INFO     | mean y: 2874513.605902778
[2025-11-28 06:30:35] 2025-11-28 11:30:03,972 | INFO     | intersect: -10770179974.20565
[2025-11-28 06:30:35] 2025-11-28 11:30:03,973 | INFO     | chi2: 2.3804046424308156
[2025-11-28 06:30:35] 2025-11-28 11:30:03,973 | INFO     | current chi2=2.3804046424308156 (change=14.766584808938244 %)
[2025-11-28 06:30:35] 2025-11-28 11:30:03,973 | INFO     | right removable region: 1151
[2025-11-28 06:30:35] 2025-11-28 11:30:03,974 | INFO     | sum of square deviations: 480261206373.1944
[2025-11-28 06:30:35] 2025-11-28 11:30:04,000 | INFO     | sum of deviations: 2162604596435.3792
[2025-11-28 06:30:35] 2025-11-28 11:30:04,000 | INFO     | mean x: 1764294103.5592048
[2025-11-28 06:30:35] 2025-11-28 11:30:04,000 | INFO     | mean y: 2870645.855661193
[2025-11-28 06:30:35] 2025-11-28 11:30:04,000 | INFO     | intersect: -7941703030.278619
[2025-11-28 06:30:35] 2025-11-28 11:30:04,001 | INFO     | chi2: 3.3995913314144532
[2025-11-28 06:30:35] 2025-11-28 11:30:04,002 | INFO     | current chi2=3.3995913314144532 (change=36.87401265352447 %)
[2025-11-28 06:30:35] 2025-11-28 11:30:04,003 | INFO     | sum of square deviations: 474061488146.6239
[2025-11-28 06:30:35] 2025-11-28 11:30:04,028 | INFO     | sum of deviations: 2066508307287.2266
[2025-11-28 06:30:35] 2025-11-28 11:30:04,028 | INFO     | mean x: 1764294256.061632
[2025-11-28 06:30:35] 2025-11-28 11:30:04,028 | INFO     | mean y: 2873009.292534722
[2025-11-28 06:30:35] 2025-11-28 11:30:04,029 | INFO     | intersect: -7687962099.259542
[2025-11-28 06:30:35] 2025-11-28 11:30:04,030 | INFO     | chi2: 3.303909570380654
[2025-11-28 06:30:35] 2025-11-28 11:30:04,030 | INFO     | current chi2=3.303909570380654 (change=2.814507736551662 %)
[2025-11-28 06:30:35] 2025-11-28 11:30:04,030 | INFO     | left removable region: 20
[2025-11-28 06:30:35] 2025-11-28 11:30:04,031 | INFO     | sum of square deviations: 448606368273.70996
[2025-11-28 06:30:35] 2025-11-28 11:30:04,055 | INFO     | sum of deviations: 2370913566250.873
[2025-11-28 06:30:35] 2025-11-28 11:30:04,056 | INFO     | mean x: 1764294225.566755
[2025-11-28 06:30:35] 2025-11-28 11:30:04,056 | INFO     | mean y: 2887683.24668435
[2025-11-28 06:30:35] 2025-11-28 11:30:04,056 | INFO     | intersect: -9321520996.797094
[2025-11-28 06:30:35] 2025-11-28 11:30:04,057 | INFO     | chi2: 0.21523976073528162
[2025-11-28 06:30:35] 2025-11-28 11:30:04,057 | INFO     | current memory leak: 5.29 B/s (using 1131 data points, chi2=0.22)
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | could have reported an average CPU frequency of 2564 MHz (42 samples)
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | ..............................
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | . Timing measurements:
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | . get job = 0 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | . initial setup = 2 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | . payload setup = 8 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | . stage-in = 0 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,058 | INFO     | . payload execution = 70852 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,059 | INFO     | . stage-out = 3 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,059 | INFO     | . log creation = 0 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,059 | INFO     | ..............................
[2025-11-28 06:30:35] 2025-11-28 11:30:04,153 | INFO     | 
[2025-11-28 06:30:35] 2025-11-28 11:30:04,153 | INFO     | job summary report
[2025-11-28 06:30:35] 2025-11-28 11:30:04,153 | INFO     | --------------------------------------------------
[2025-11-28 06:30:35] 2025-11-28 11:30:04,153 | INFO     | PanDA job id: 6892522727
[2025-11-28 06:30:35] 2025-11-28 11:30:04,153 | INFO     | task id: 47493029
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | errors: (none)
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | pilot state: finished 
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | transexitcode: 0
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | exeerrorcode: 0
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | exeerrordiag: 
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | exitcode: 0
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | exitmsg: OK
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | cpuconsumptiontime: 546118 s
[2025-11-28 06:30:35] 2025-11-28 11:30:04,154 | INFO     | nevents: 1000
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | neventsw: 0
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | pid: 6429
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | pgrp: 6429
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | corecount: 8
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | event service: False
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | sizes: {0: 2284129, 1: 2284328, 5: 2284590, 11: 2284646, 70865: 2341402, 70869: 2350396, 70870: 2350580, 70877: 2350826}
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | --------------------------------------------------
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | 
[2025-11-28 06:30:35] 2025-11-28 11:30:04,155 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 06:30:35] 2025-11-28 11:30:04,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | job 6892522727 has completed (purged errors)
[2025-11-28 06:30:35] 2025-11-28 11:30:04,174 | INFO     | overall cleanup function is called
[2025-11-28 06:30:35] 2025-11-28 11:30:05,187 | INFO     | --- collectZombieJob: --- 10, [6429]
[2025-11-28 06:30:35] 2025-11-28 11:30:05,187 | INFO     | zombie collector waiting for pid 6429
[2025-11-28 06:30:35] 2025-11-28 11:30:05,187 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:30:35] 2025-11-28 11:30:05,187 | INFO     | collected zombie processes
[2025-11-28 06:30:35] 2025-11-28 11:30:05,187 | INFO     | will attempt to kill all subprocesses of pid=6429
[2025-11-28 06:30:35] 2025-11-28 11:30:05,303 | INFO     | process IDs to be killed: [6429] (in reverse order)
[2025-11-28 06:30:35] 2025-11-28 11:30:05,339 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:30:35] 2025-11-28 11:30:05,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:30:35] 2025-11-28 11:30:05,342 | INFO     | did not find any defunct processes belonging to 6429
[2025-11-28 06:30:35] 2025-11-28 11:30:05,345 | INFO     | did not find any defunct processes belonging to 6429
[2025-11-28 06:30:35] 2025-11-28 11:30:05,347 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:30:35] 2025-11-28 11:30:05,347 | INFO     | ready for new job
[2025-11-28 06:30:35] 2025-11-28 11:30:05,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:30:35] 2025-11-28 11:30:05,351 | INFO     | ***************************************
[2025-11-28 06:30:35] 2025-11-28 11:30:05,351 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:30:35] 2025-11-28 11:30:05,351 | INFO     | ***************************************
[2025-11-28 06:30:35] 2025-11-28 11:30:05,351 | INFO     | 
[2025-11-28 06:30:35] 2025-11-28 11:30:05,352 | INFO     | architecture information:
[2025-11-28 06:30:35] 2025-11-28 11:30:05,352 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:30:35] 2025-11-28 11:30:05,362 | INFO     | cat /etc/os-release:
[2025-11-28 06:30:35] NAME="CentOS Linux"
[2025-11-28 06:30:35] VERSION="7 (Core)"
[2025-11-28 06:30:35] ID="centos"
[2025-11-28 06:30:35] ID_LIKE="rhel fedora"
[2025-11-28 06:30:35] VERSION_ID="7"
[2025-11-28 06:30:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:30:35] ANSI_COLOR="0;31"
[2025-11-28 06:30:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:30:35] HOME_URL="https://www.centos.org/"
[2025-11-28 06:30:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:30:35] 
[2025-11-28 06:30:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:30:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:30:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:30:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:30:35] 
[2025-11-28 06:30:35] 2025-11-28 11:30:05,363 | INFO     | ***************************************
[2025-11-28 06:30:35] 2025-11-28 11:30:05,865 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 06:30:35] 2025-11-28 11:30:05,878 | INFO     | sufficient remaining disk space (26049773568 B)
[2025-11-28 06:30:35] 2025-11-28 11:30:05,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:30:35] 2025-11-28 11:30:05,879 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:30:35] 2025-11-28 11:30:05,879 | INFO     | update_server=False
[2025-11-28 06:30:35] 2025-11-28 11:30:05,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:30:35] 2025-11-28 11:30:05,880 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:30:35] 2025-11-28 11:30:05,928 | INFO     | all data control threads have been joined
[2025-11-28 06:30:35] 2025-11-28 11:30:05,931 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 06:30:35] 2025-11-28 11:30:05,931 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 06:30:35] 2025-11-28 11:30:05,931 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:30:35] 2025-11-28 11:30:05,931 | INFO     | will abort loop
[2025-11-28 06:30:35] 2025-11-28 11:30:06,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:30:35] 2025-11-28 11:30:06,622 | INFO     | all payload control threads have been joined
[2025-11-28 06:30:35] 2025-11-28 11:30:06,874 | INFO     | all job control threads have been joined
[2025-11-28 06:30:35] 2025-11-28 11:30:06,885 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:06,885 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:06,933 | INFO     | [data] control thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:06,937 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:07,317 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:07,431 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:07,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:07,487 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:07,627 | INFO     | [payload] control thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:07,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:30:35] 2025-11-28 11:30:07,879 | INFO     | [job] control thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:07,936 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:08,060 | INFO     | [job] validate thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:08,202 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:08,387 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:08,537 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:11,732 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:30:35] 2025-11-28 11:30:29,091 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:30:35] 2025-11-28 11:30:30,134 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140248948213568)>', '<ExcThread(monitor, started 140248507991808)>']
[2025-11-28 06:30:35] 2025-11-28 11:30:35,144 | INFO     | all workflow threads have been joined
[2025-11-28 06:30:35] 2025-11-28 11:30:35,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:30:35] 2025-11-28 11:30:35,144 | INFO     | traces error code: 0
[2025-11-28 06:30:35] 2025-11-28 11:30:35,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:30:35] 2025-11-28 11:30:35,439 | INFO     | PID=13232 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 06:30:35] 2025-11-28 11:30:35,440 | INFO     | .. there are 2 such processes running
[2025-11-28 06:30:35] 2025-11-28 11:30:35,440 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:30:35] 2025-11-28 11:30:35,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:30:35] 2025-11-28 11:30:35,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:30:35] 2025-11-28 11:30:35,440 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:30:35] 2025-11-28 11:30:35,440 | INFO     | [monitor] control thread has ended
[2025-11-28 06:30:35] 2025-11-28 11:30:35,533 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:30:35] 2025-11-28 11:30:35,536 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:30:35] 2025-11-28 11:30:35,539 [wrapper] pilotpid: 13232
[2025-11-28 06:30:35] 2025-11-28 11:30:35,541 [wrapper] Pilot exit status: 0
[2025-11-28 06:30:35] 2025-11-28 11:30:35,552 [wrapper] pandaids: 6892522727 6892522727
[2025-11-28 06:30:35] 2025-11-28 11:30:35,580 [wrapper] cleanup supervisor_pilot 21621 13233
[2025-11-28 06:30:35] 2025-11-28 11:30:35,583 [wrapper] Test setup, not cleaning
[2025-11-28 06:30:35] 2025-11-28 11:30:35,586 [wrapper] apfmon messages muted
[2025-11-28 06:30:35] 2025-11-28 11:30:35,588 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:30:35] 2025-11-28 11:30:35,591 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:30:35]  *** Error codes and diagnostics ***
[2025-11-28 06:30:35]     "exeErrorCode": 0,
[2025-11-28 06:30:35]     "exeErrorDiag": "",
[2025-11-28 06:30:35]     "pilotErrorCode": 0,
[2025-11-28 06:30:35]     "pilotErrorDiag": "",
[2025-11-28 06:30:35]  *** Listing of results directory ***
[2025-11-28 06:30:35] total 1731152
[2025-11-28 06:30:35] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:04 queuedata.json
[2025-11-28 06:30:35] -rwx------ 1 boincer umatlas     36292 Nov 19 02:05 runpilot2-wrapper.sh
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas       100 Nov 27 06:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:30:35] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 06:59 run_atlas
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas       105 Nov 27 06:59 job.xml
[2025-11-28 06:30:35] -rw-r--r-- 3 boincer umatlas 409378476 Nov 27 06:59 EVNT.47493027._000052.pool.root.1
[2025-11-28 06:30:35] -rw-r--r-- 3 boincer umatlas 409378476 Nov 27 06:59 ATLAS.root_0
[2025-11-28 06:30:35] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 06:59 start_atlas.sh
[2025-11-28 06:30:35] drwxrwx--x 2 boincer umatlas      4096 Nov 27 06:59 shared
[2025-11-28 06:30:35] -rw-r--r-- 2 boincer umatlas    590097 Nov 27 06:59 input.tar.gz
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas         0 Nov 27 06:59 boinc_lockfile
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas      2771 Nov 27 10:48 pandaJob.out
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas    991572 Nov 27 10:48 agis_schedconf.cvmfs.json
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas       533 Nov 28 06:18 boinc_task_state.xml
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas      5953 Nov 28 06:28 init_data.xml
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas 925788030 Nov 28 06:29 HITS.47493029._000479.pool.root.1
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas      1064 Nov 28 06:29 memory_monitor_summary.json
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas        96 Nov 28 06:29 pilot_heartbeat.json
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas   1516240 Nov 28 06:29 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas   2311501 Nov 28 06:29 log.47493029._000479.job.log.tgz.1
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas      8647 Nov 28 06:30 heartbeat.json
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas        29 Nov 28 06:30 wrapper_checkpoint.txt
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas      8192 Nov 28 06:30 boinc_mmap_file
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas       820 Nov 28 06:30 pilotlog.txt
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas   9807094 Nov 28 06:30 log.47493029._000479.job.log.1
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas       353 Nov 28 06:30 output.list
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas       620 Nov 28 06:30 runtime_log
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas  12134400 Nov 28 06:30 result.tar.gz
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas       793 Nov 28 06:30 StNNDm6Qrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrcGKDmNrhaAn.diag
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas      8789 Nov 28 06:30 runtime_log.err
[2025-11-28 06:30:35] -rw-r--r-- 1 boincer umatlas     23527 Nov 28 06:30 stderr.txt
[2025-11-28 06:30:35] HITS file was successfully produced:
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas 925788030 Nov 28 06:29 shared/HITS.pool.root.1
[2025-11-28 06:30:35]  *** Contents of shared directory: ***
[2025-11-28 06:30:35] total 1316332
[2025-11-28 06:30:35] -rw-r--r-- 3 boincer umatlas 409378476 Nov 27 06:59 ATLAS.root_0
[2025-11-28 06:30:35] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 06:59 start_atlas.sh
[2025-11-28 06:30:35] -rw-r--r-- 2 boincer umatlas    590097 Nov 27 06:59 input.tar.gz
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas 925788030 Nov 28 06:29 HITS.pool.root.1
[2025-11-28 06:30:35] -rw------- 1 boincer umatlas  12134400 Nov 28 06:30 result.tar.gz
06:30:37 (2069): run_atlas exited; CPU time 544744.090131
06:30:37 (2069): called boinc_finish(0)

</stderr_txt>
]]>

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