Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:22:07 (2673009): wrapper (7.7.26015): starting
05:22:07 (2673009): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:22:07] Arguments: --nthreads 8
[2025-11-27 05:22:07] Threads: 8
[2025-11-27 05:22:07] Checking for CVMFS
[2025-11-27 05:22:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:22:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:22:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:22:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:22:09] 2.13.3.0 9582 31342 243368 153360 0 277 30455582 40960001 68785 16776704 0 402620245 99.725 276675194 48428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 05:22:09] CVMFS is ok
[2025-11-27 05:22:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:22:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:22:09] Further information can be found at the LHC@home message board.
[2025-11-27 05:22:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:22:09] Checking for apptainer binary...
[2025-11-27 05:22:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:22:09] Running /usr/bin/apptainer --version
[2025-11-27 05:22:09] apptainer version 1.4.4-1.el9
[2025-11-27 05:22:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:22:10] c8-7-4.aglt2.org
[2025-11-27 05:22:10] apptainer works
[2025-11-27 05:22:10] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:22:10] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:22:10] Starting ATLAS job with PandaID=6897372676
[2025-11-27 05:22:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:35:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:35:05] 2025-11-27 18:33:46,368 | INFO     | time since job start (29441s) is within the limit (172800.0s)
[2025-11-27 13:35:05] 2025-11-27 18:33:48,407 | INFO     | time since job start (29443s) is within the limit (172800.0s)
[2025-11-27 13:35:05] 2025-11-27 18:33:48,677 | INFO     | monitor loop #1644: job 0:6897372676 is in state 'finished'
[2025-11-27 13:35:05] 2025-11-27 18:33:48,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:35:05] 2025-11-27 18:33:50,416 | INFO     | time since job start (29445s) is within the limit (172800.0s)
[2025-11-27 13:35:05] 2025-11-27 18:33:51,222 | INFO     | monitor loop #1645: job 0:6897372676 is in state 'finished'
[2025-11-27 13:35:05] 2025-11-27 18:33:51,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:35:05] 2025-11-27 18:33:52,424 | INFO     | time since job start (29447s) is within the limit (172800.0s)
[2025-11-27 13:35:05] 2025-11-27 18:33:53,737 | INFO     | monitor loop #1646: job 0:6897372676 is in state 'finished'
[2025-11-27 13:35:05] 2025-11-27 18:33:53,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:35:05] 2025-11-27 18:33:54,431 | INFO     | time since job start (29449s) is within the limit (172800.0s)
[2025-11-27 13:35:05] 2025-11-27 18:33:56,260 | INFO     | monitor loop #1647: job 0:6897372676 is in state 'finished'
[2025-11-27 13:35:05] 2025-11-27 18:33:56,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 13:35:05] 2025-11-27 18:33:56,441 | INFO     | time since job start (29451s) is within the limit (172800.0s)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,460 | INFO     | time since job start (29453s) is within the limit (172800.0s)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,477 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 13:35:05] 2025-11-27 18:33:58,490 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.4941562500007
[2025-11-27 13:35:05] 2025-11-27 18:33:58,516 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897372676/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,517 | INFO     | extracted standard info from prmon json
[2025-11-27 13:35:05] 2025-11-27 18:33:58,517 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:35:05] 2025-11-27 18:33:58,517 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:35:05] 2025-11-27 18:33:58,530 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:35:05] 2025-11-27 18:33:58,530 | INFO     | sum of square deviations: 34293834693.991673
[2025-11-27 13:35:05] 2025-11-27 18:33:58,537 | INFO     | sum of deviations: -122170798819.30872
[2025-11-27 13:35:05] 2025-11-27 18:33:58,537 | INFO     | mean x: 1764253737.8708334
[2025-11-27 13:35:05] 2025-11-27 18:33:58,537 | INFO     | mean y: 2712383.720833333
[2025-11-27 13:35:05] 2025-11-27 18:33:58,537 | INFO     | intersect: 6287815534.1537
[2025-11-27 13:35:05] 2025-11-27 18:33:58,538 | INFO     | chi2: 27.100878793074994
[2025-11-27 13:35:05] 2025-11-27 18:33:58,538 | INFO     | sum of square deviations: 33233513164.496838
[2025-11-27 13:35:05] 2025-11-27 18:33:58,544 | INFO     | sum of deviations: 22766750183.993637
[2025-11-27 13:35:05] 2025-11-27 18:33:58,544 | INFO     | mean x: 1764253585.3852632
[2025-11-27 13:35:05] 2025-11-27 18:33:58,544 | INFO     | mean y: 2733217.770526316
[2025-11-27 13:35:05] 2025-11-27 18:33:58,545 | INFO     | intersect: -1205875707.8302376
[2025-11-27 13:35:05] 2025-11-27 18:33:58,545 | INFO     | chi2: 23.616912752471006
[2025-11-27 13:35:05] 2025-11-27 18:33:58,545 | INFO     | current chi2=23.616912752471006 (change=12.855546372519239 %)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,545 | INFO     | right removable region: 474
[2025-11-27 13:35:05] 2025-11-27 18:33:58,545 | INFO     | sum of square deviations: 33233111784.49682
[2025-11-27 13:35:05] 2025-11-27 18:33:58,552 | INFO     | sum of deviations: -306521578242.0783
[2025-11-27 13:35:05] 2025-11-27 18:33:58,552 | INFO     | mean x: 1764253890.3852632
[2025-11-27 13:35:05] 2025-11-27 18:33:58,552 | INFO     | mean y: 2738879.5031578946
[2025-11-27 13:35:05] 2025-11-27 18:33:58,552 | INFO     | intersect: 16275120786.059715
[2025-11-27 13:35:05] 2025-11-27 18:33:58,553 | INFO     | chi2: 22.937775748208665
[2025-11-27 13:35:05] 2025-11-27 18:33:58,553 | INFO     | current chi2=22.937775748208665 (change=15.361505715933147 %)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,553 | INFO     | left removable region: 10
[2025-11-27 13:35:05] 2025-11-27 18:33:58,553 | INFO     | sum of square deviations: 30977444490.887894
[2025-11-27 13:35:05] 2025-11-27 18:33:58,560 | INFO     | sum of deviations: -271491764383.62527
[2025-11-27 13:35:05] 2025-11-27 18:33:58,560 | INFO     | mean x: 1764253859.9181035
[2025-11-27 13:35:05] 2025-11-27 18:33:58,560 | INFO     | mean y: 2786362.0625
[2025-11-27 13:35:05] 2025-11-27 18:33:58,560 | INFO     | intersect: 15465017063.199926
[2025-11-27 13:35:05] 2025-11-27 18:33:58,561 | INFO     | chi2: 16.150336966875887
[2025-11-27 13:35:05] 2025-11-27 18:33:58,561 | INFO     | current memory leak: -8.76 B/s (using 464 data points, chi2=16.15)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,561 | INFO     | could have reported an average CPU frequency of 3797 MHz (19 samples)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,561 | INFO     | ..............................
[2025-11-27 13:35:05] 2025-11-27 18:33:58,561 | INFO     | . Timing measurements:
[2025-11-27 13:35:05] 2025-11-27 18:33:58,561 | INFO     | . get job = 0 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,562 | INFO     | . initial setup = 2 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,562 | INFO     | . payload setup = 45 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,562 | INFO     | . stage-in = 0 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,562 | INFO     | . payload execution = 29292 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,562 | INFO     | . stage-out = 6 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,562 | INFO     | . log creation = 1 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,562 | INFO     | ..............................
[2025-11-27 13:35:05] 2025-11-27 18:33:58,734 | INFO     | 
[2025-11-27 13:35:05] 2025-11-27 18:33:58,734 | INFO     | job summary report
[2025-11-27 13:35:05] 2025-11-27 18:33:58,734 | INFO     | --------------------------------------------------
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | PanDA job id: 6897372676
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | task id: 47556161
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | errors: (none)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | pilot state: finished 
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | transexitcode: 0
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | exeerrorcode: 0
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | exeerrordiag: 
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | exitcode: 0
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | exitmsg: OK
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | cpuconsumptiontime: 133523 s
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | nevents: 1000
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | neventsw: 0
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | pid: 2709178
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | pgrp: 2709178
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | corecount: 8
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | event service: False
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | sizes: {0: 2284094, 1: 2284293, 12: 2284293, 22: 2284321, 23: 2284611, 33: 2284639, 29342: 2322588, 29350: 2331582, 29352: 2331638, 29393: 2331884}
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | --------------------------------------------------
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | 
[2025-11-27 13:35:05] 2025-11-27 18:33:58,735 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,952 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:35:05] 2025-11-27 18:33:58,953 | INFO     | job 6897372676 has completed (purged errors)
[2025-11-27 13:35:05] 2025-11-27 18:33:58,953 | INFO     | overall cleanup function is called
[2025-11-27 13:35:05] 2025-11-27 18:33:59,990 | INFO     | --- collectZombieJob: --- 10, [2709178]
[2025-11-27 13:35:05] 2025-11-27 18:33:59,991 | INFO     | zombie collector waiting for pid 2709178
[2025-11-27 13:35:05] 2025-11-27 18:33:59,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:35:05] 2025-11-27 18:33:59,991 | INFO     | collected zombie processes
[2025-11-27 13:35:05] 2025-11-27 18:33:59,991 | INFO     | will attempt to kill all subprocesses of pid=2709178
[2025-11-27 13:35:05] 2025-11-27 18:34:02,680 | INFO     | PID=2684128 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:35:05] 2025-11-27 18:34:02,680 | INFO     | .. there are 94 such processes running
[2025-11-27 13:35:05] 2025-11-27 18:34:02,970 | INFO     | process IDs to be killed: [2709178] (in reverse order)
[2025-11-27 13:35:05] 2025-11-27 18:34:03,510 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:35:05] 2025-11-27 18:34:03,510 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:35:05] 2025-11-27 18:34:03,577 | INFO     | did not find any defunct processes belonging to 2709178
[2025-11-27 13:35:05] 2025-11-27 18:34:03,670 | INFO     | did not find any defunct processes belonging to 2709178
[2025-11-27 13:35:05] 2025-11-27 18:34:03,676 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:35:05] 2025-11-27 18:34:03,676 | INFO     | ready for new job
[2025-11-27 13:35:05] 2025-11-27 18:34:03,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:35:05] 2025-11-27 18:34:03,693 | INFO     | ***************************************
[2025-11-27 13:35:05] 2025-11-27 18:34:03,693 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:35:05] 2025-11-27 18:34:03,693 | INFO     | ***************************************
[2025-11-27 13:35:05] 2025-11-27 18:34:03,693 | INFO     | 
[2025-11-27 13:35:05] 2025-11-27 18:34:03,697 | INFO     | architecture information:
[2025-11-27 13:35:05] 2025-11-27 18:34:03,702 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:35:05] 2025-11-27 18:34:03,745 | INFO     | cat /etc/os-release:
[2025-11-27 13:35:05] NAME="CentOS Linux"
[2025-11-27 13:35:05] VERSION="7 (Core)"
[2025-11-27 13:35:05] ID="centos"
[2025-11-27 13:35:05] ID_LIKE="rhel fedora"
[2025-11-27 13:35:05] VERSION_ID="7"
[2025-11-27 13:35:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:35:05] ANSI_COLOR="0;31"
[2025-11-27 13:35:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:35:05] HOME_URL="https://www.centos.org/"
[2025-11-27 13:35:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:35:05] 
[2025-11-27 13:35:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:35:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:35:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:35:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:35:05] 
[2025-11-27 13:35:05] 2025-11-27 18:34:03,745 | INFO     | ***************************************
[2025-11-27 13:35:05] 2025-11-27 18:34:04,249 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 13:35:05] 2025-11-27 18:34:04,322 | INFO     | sufficient remaining disk space (158607605760 B)
[2025-11-27 13:35:05] 2025-11-27 18:34:04,322 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:35:05] 2025-11-27 18:34:04,323 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:35:05] 2025-11-27 18:34:04,323 | INFO     | update_server=False
[2025-11-27 13:35:05] 2025-11-27 18:34:04,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:35:05] 2025-11-27 18:34:04,327 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:35:05] 2025-11-27 18:34:04,327 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:35:05] 2025-11-27 18:34:04,364 | INFO     | all payload control threads have been joined
[2025-11-27 13:35:05] 2025-11-27 18:34:04,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:35:05] 2025-11-27 18:34:04,807 | INFO     | aborting loop
[2025-11-27 13:35:05] 2025-11-27 18:34:04,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:35:05] 2025-11-27 18:34:05,331 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:05,334 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:05,381 | INFO     | all data control threads have been joined
[2025-11-27 13:35:05] 2025-11-27 18:34:05,383 | INFO     | [payload] control thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:05,793 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:05,812 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:05,837 | INFO     | [job] validate thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:05,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:05,841 | INFO     | all job control threads have been joined
[2025-11-27 13:35:05] 2025-11-27 18:34:06,331 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:06,332 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:06,336 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:06,387 | INFO     | [data] control thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:06,467 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:06,679 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:06,838 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:06,861 | INFO     | [job] control thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:08,858 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:35:05] 2025-11-27 18:34:37,270 | INFO     | PID=2684128 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 13:35:05] 2025-11-27 18:34:37,270 | INFO     | .. there are 94 such processes running
[2025-11-27 13:35:05] 2025-11-27 18:34:37,270 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:35:05] 2025-11-27 18:34:37,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:35:05] 2025-11-27 18:34:37,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:35:05] 2025-11-27 18:34:56,776 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:35:05] 2025-11-27 18:34:57,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558707087168)>', '<ExcThread(monitor, started 140558190221056)>']
[2025-11-27 13:35:05] 2025-11-27 18:34:57,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:35:05] 2025-11-27 18:34:57,392 | INFO     | [monitor] control thread has ended
[2025-11-27 13:35:05] 2025-11-27 18:35:02,188 | INFO     | all workflow threads have been joined
[2025-11-27 13:35:05] 2025-11-27 18:35:02,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:35:05] 2025-11-27 18:35:02,189 | INFO     | traces error code: 0
[2025-11-27 13:35:05] 2025-11-27 18:35:02,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:35:05] 2025-11-27 18:35:03,729 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:35:05] 2025-11-27 18:35:03,745 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:35:05] 2025-11-27 18:35:03,772 [wrapper] pilotpid: 2684128
[2025-11-27 13:35:05] 2025-11-27 18:35:03,804 [wrapper] Pilot exit status: 0
[2025-11-27 13:35:05] 2025-11-27 18:35:03,972 [wrapper] pandaids: 6897372676
[2025-11-27 13:35:05] 2025-11-27 18:35:04,347 [wrapper] cleanup supervisor_pilot 2469307 2684129
[2025-11-27 13:35:05] 2025-11-27 18:35:04,379 [wrapper] Test setup, not cleaning
[2025-11-27 13:35:05] 2025-11-27 18:35:04,401 [wrapper] apfmon messages muted
[2025-11-27 13:35:05] 2025-11-27 18:35:04,438 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:35:05] 2025-11-27 18:35:04,463 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:35:05]  *** Error codes and diagnostics ***
[2025-11-27 13:35:05]     "exeErrorCode": 0,
[2025-11-27 13:35:05]     "exeErrorDiag": "",
[2025-11-27 13:35:05]     "pilotErrorCode": 0,
[2025-11-27 13:35:05]     "pilotErrorDiag": "",
[2025-11-27 13:35:05]  *** Listing of results directory ***
[2025-11-27 13:35:05] total 1309056
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 13:35:05] -rwx------. 1 boincer umatlas     36292 Nov 25 11:55 runpilot2-wrapper.sh
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 11:55 queuedata.json
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas       100 Nov 27 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:35:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 05:22 run_atlas
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas       105 Nov 27 05:22 job.xml
[2025-11-27 13:35:05] -rw-r--r--. 2 boincer umatlas 409994071 Nov 27 05:22 EVNT.47483658._002202.pool.root.1
[2025-11-27 13:35:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 05:22 start_atlas.sh
[2025-11-27 13:35:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 05:22 shared
[2025-11-27 13:35:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 05:22 input.tar.gz
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas         0 Nov 27 05:22 boinc_lockfile
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 05:22 pandaJob.out
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas        57 Nov 27 05:22 setup.sh.local
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas    991564 Nov 27 05:23 agis_schedconf.cvmfs.json
[2025-11-27 13:35:05] drwx------. 5 boincer umatlas      4096 Nov 27 05:23 pilot3
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas       532 Nov 27 13:03 boinc_task_state.xml
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 13:31 init_data.xml
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas 915962126 Nov 27 13:32 HITS.47556161._001853.pool.root.1
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas      1052 Nov 27 13:33 memory_monitor_summary.json
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:33 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas   1737921 Nov 27 13:33 log.47556161._001853.job.log.tgz.1
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas        95 Nov 27 13:33 pilot_heartbeat.json
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas      8581 Nov 27 13:33 heartbeat.json
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:35 boinc_mmap_file
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas      4825 Nov 27 13:35 pilotlog.txt
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:35 wrapper_checkpoint.txt
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas   3556644 Nov 27 13:35 log.47556161._001853.job.log.1
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas       353 Nov 27 13:35 output.list
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:35 runtime_log
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas   5314560 Nov 27 13:35 result.tar.gz
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 13:35 runtime_log.err
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas       658 Nov 27 13:35 0iVNDm8UBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9PMKDmkoczUm.diag
[2025-11-27 13:35:05] -rw-r--r--. 1 boincer umatlas     21865 Nov 27 13:35 stderr.txt
[2025-11-27 13:35:05] HITS file was successfully produced:
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas 915962126 Nov 27 13:32 shared/HITS.pool.root.1
[2025-11-27 13:35:05]  *** Contents of shared directory: ***
[2025-11-27 13:35:05] total 1300680
[2025-11-27 13:35:05] -rw-r--r--. 2 boincer umatlas 409994071 Nov 27 05:22 ATLAS.root_0
[2025-11-27 13:35:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 05:22 start_atlas.sh
[2025-11-27 13:35:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 27 05:22 input.tar.gz
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas 915962126 Nov 27 13:32 HITS.pool.root.1
[2025-11-27 13:35:05] -rw-------. 1 boincer umatlas   5314560 Nov 27 13:35 result.tar.gz
13:35:07 (2673009): run_atlas exited; CPU time 134155.592461
13:35:07 (2673009): called boinc_finish(0)

</stderr_txt>
]]>

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