Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:12:47 (3960982): wrapper (7.7.26015): starting
11:12:47 (3960982): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 11:12:47] Arguments: --nthreads 3
[2025-11-27 11:12:47] Threads: 3
[2025-11-27 11:12:47] Checking for CVMFS
[2025-11-27 11:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:12:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:12:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:12:48] 2.9.2.0 3252557 153 63656 153359 3 9 35968579 36864001 0 130560 0 2128573 100.000 9011 24288 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 11:12:48] CVMFS is ok
[2025-11-27 11:12:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:12:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:12:48] Further information can be found at the LHC@home message board.
[2025-11-27 11:12:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:12:48] Checking for apptainer binary...
[2025-11-27 11:12:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:12:48] Running /usr/bin/apptainer --version
[2025-11-27 11:12:48] apptainer version 1.4.1-1.1
[2025-11-27 11:12:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:12:48] thA335
[2025-11-27 11:12:48] apptainer works
[2025-11-27 11:12:48] Set ATHENA_PROC_NUMBER=3
[2025-11-27 11:12:48] Set ATHENA_CORE_NUMBER=3
[2025-11-27 11:12:48] Starting ATLAS job with PandaID=6898722364
[2025-11-27 11:12:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:17:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:17:07] 2025-11-27 10:16:16,214 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:17:07] 2025-11-27 10:16:16,214 | INFO     | update_server=False
[2025-11-27 11:17:07] 2025-11-27 10:16:16,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:17:07] 2025-11-27 10:16:16,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:17:07] 2025-11-27 10:16:16,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:17:07] 2025-11-27 10:16:16,253 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 11:17:07] 2025-11-27 10:16:16,253 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 11:17:07] 2025-11-27 10:16:16,253 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:17:07] 2025-11-27 10:16:16,253 | INFO     | will abort loop
[2025-11-27 11:17:07] 2025-11-27 10:16:16,506 | INFO     | all data control threads have been joined
[2025-11-27 11:17:07] 2025-11-27 10:16:16,809 | INFO     | all payload control threads have been joined
[2025-11-27 11:17:07] 2025-11-27 10:16:17,220 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,221 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,259 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,348 | INFO     | all job control threads have been joined
[2025-11-27 11:17:07] 2025-11-27 10:16:17,415 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,512 | INFO     | [data] control thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,647 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,766 | INFO     | [job] validate thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,815 | INFO     | [payload] control thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,843 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:17,906 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:18,114 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:18,131 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:18,223 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:18,354 | INFO     | [job] control thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:18,468 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:17:07] 2025-11-27 10:16:22,475 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:17:07] 2025-11-27 10:16:45,964 | INFO     | PID=3964720 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:17:07] 2025-11-27 10:16:45,964 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:17:07] 2025-11-27 10:16:45,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:17:07] 2025-11-27 10:16:45,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:17:07] 2025-11-27 10:17:01,083 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:17:07] 2025-11-27 10:17:02,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140185294952256)>', '<ExcThread(monitor, started 140184939112192)>']
[2025-11-27 11:17:07] 2025-11-27 10:17:03,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:17:07] 2025-11-27 10:17:03,049 | INFO     | [monitor] control thread has ended
[2025-11-27 11:17:07] 2025-11-27 10:17:07,372 | INFO     | all workflow threads have been joined
[2025-11-27 11:17:07] 2025-11-27 10:17:07,372 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:17:07] 2025-11-27 10:17:07,373 | INFO     | traces error code: 0
[2025-11-27 11:17:07] 2025-11-27 10:17:07,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:17:07] 2025-11-27 10:17:07,436 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:17:07] 2025-11-27 10:17:07,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:17:07] 2025-11-27 10:17:07,442 [wrapper] pilotpid: 3964720
[2025-11-27 11:17:07] 2025-11-27 10:17:07,445 [wrapper] Pilot exit status: 0
[2025-11-27 11:17:07] 2025-11-27 10:17:07,452 [wrapper] pandaids: 6898722364
[2025-11-27 11:17:07] 2025-11-27 10:17:07,471 [wrapper] cleanup supervisor_pilot 3964726 3964721
[2025-11-27 11:17:07] 2025-11-27 10:17:07,474 [wrapper] Test setup, not cleaning
[2025-11-27 11:17:07] 2025-11-27 10:17:07,477 [wrapper] apfmon messages muted
[2025-11-27 11:17:07] 2025-11-27 10:17:07,480 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:17:07] 2025-11-27 10:17:07,483 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:17:07]  *** Error codes and diagnostics ***
[2025-11-27 11:17:07]     "exeErrorCode": 65,
[2025-11-27 11:17:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 11:17:07]     "pilotErrorCode": 1305,
[2025-11-27 11:17:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 11:17:07]  *** Listing of results directory ***
[2025-11-27 11:17:07] total 404444
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc    576529 Nov 26 23:16 pilot3.tar.gz
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc      5112 Nov 26 23:48 queuedata.json
[2025-11-27 11:17:07] -rwx------ 1 boinc boinc     36292 Nov 26 23:49 runpilot2-wrapper.sh
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc       100 Nov 27 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:17:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 11:12 run_atlas
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc       105 Nov 27 11:12 job.xml
[2025-11-27 11:17:07] -rw-r--r-- 2 boinc boinc 409948240 Nov 27 11:12 EVNT.47483658._002711.pool.root.1
[2025-11-27 11:17:07] -rw-r--r-- 2 boinc boinc    590105 Nov 27 11:12 input.tar.gz
[2025-11-27 11:17:07] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:12 start_atlas.sh
[2025-11-27 11:17:07] drwxrwx--x 2 boinc boinc      4096 Nov 27 11:12 shared
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:12 boinc_setup_complete
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc      6196 Nov 27 11:12 init_data.xml
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:12 boinc_lockfile
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc      2786 Nov 27 11:12 pandaJob.out
[2025-11-27 11:17:07] -rw------- 1 boinc boinc    991551 Nov 27 11:13 agis_schedconf.cvmfs.json
[2025-11-27 11:17:07] -rw------- 1 boinc boinc   1516240 Nov 27 11:13 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:17:07] drwx------ 5 boinc boinc      4096 Nov 27 11:13 pilot3
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc       523 Nov 27 11:13 boinc_task_state.xml
[2025-11-27 11:17:07] -rw------- 1 boinc boinc       953 Nov 27 11:14 memory_monitor_summary.json
[2025-11-27 11:17:07] -rw------- 1 boinc boinc     56125 Nov 27 11:14 log.47556161._006932.job.log.tgz.1
[2025-11-27 11:17:07] -rw------- 1 boinc boinc        95 Nov 27 11:16 pilot_heartbeat.json
[2025-11-27 11:17:07] -rw------- 1 boinc boinc      8402 Nov 27 11:16 heartbeat.json
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc      8192 Nov 27 11:17 boinc_mmap_file
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc        23 Nov 27 11:17 wrapper_checkpoint.txt
[2025-11-27 11:17:07] -rw------- 1 boinc boinc      4938 Nov 27 11:17 pilotlog.txt
[2025-11-27 11:17:07] -rw------- 1 boinc boinc     93627 Nov 27 11:17 log.47556161._006932.job.log.1
[2025-11-27 11:17:07] -rw------- 1 boinc boinc       186 Nov 27 11:17 output.list
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc       620 Nov 27 11:17 runtime_log
[2025-11-27 11:17:07] -rw------- 1 boinc boinc    174080 Nov 27 11:17 result.tar.gz
[2025-11-27 11:17:07] -rw------- 1 boinc boinc       649 Nov 27 11:17 yZMLDmZVdi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyGKKDmR22WQm.diag
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc      8744 Nov 27 11:17 runtime_log.err
[2025-11-27 11:17:07] -rw-r--r-- 1 boinc boinc      8122 Nov 27 11:17 stderr.txt
[2025-11-27 11:17:07] No HITS result produced
[2025-11-27 11:17:07]  *** Contents of shared directory: ***
[2025-11-27 11:17:07] total 401116
[2025-11-27 11:17:07] -rw-r--r-- 2 boinc boinc 409948240 Nov 27 11:12 ATLAS.root_0
[2025-11-27 11:17:07] -rw-r--r-- 2 boinc boinc    590105 Nov 27 11:12 input.tar.gz
[2025-11-27 11:17:07] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:12 start_atlas.sh
[2025-11-27 11:17:07] -rw------- 1 boinc boinc    174080 Nov 27 11:17 result.tar.gz
11:17:09 (3960982): run_atlas exited; CPU time 32.133384
11:17:09 (3960982): called boinc_finish(0)

</stderr_txt>
]]>

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