Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:13:32 (23863): wrapper (7.7.26015): starting
05:13:32 (23863): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:13:32] Arguments: --nthreads 8
[2025-11-27 05:13:32] Threads: 8
[2025-11-27 05:13:32] Checking for CVMFS
[2025-11-27 05:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:13:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:13:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:13:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:13:32] 2.11.2.0 2804 41395 82240 153358 0 82 19892306 20275200 1 130560 0 5749384 99.580 2875666 29100 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 05:13:32] CVMFS is ok
[2025-11-27 05:13:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:13:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:13:32] Further information can be found at the LHC@home message board.
[2025-11-27 05:13:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:13:32] Checking for apptainer binary...
[2025-11-27 05:13:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:13:32] Running /usr/bin/apptainer --version
[2025-11-27 05:13:32] apptainer version 1.3.2-1.el7
[2025-11-27 05:13:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:13:34] c-204-3.aglt2.org
[2025-11-27 05:13:34] apptainer works
[2025-11-27 05:13:34] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:13:34] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:13:34] Starting ATLAS job with PandaID=6898215759
[2025-11-27 05:13:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:25:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:25:10] 2025-11-27 22:24:03,490 | INFO     | PID=27638 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 17:25:10] 2025-11-27 22:24:04,490 | INFO     | time since job start (43812s) is within the limit (172800.0s)
[2025-11-27 17:25:10] 2025-11-27 22:24:04,775 | INFO     | monitor loop #3216: job 0:6898215759 is in state 'finished'
[2025-11-27 17:25:10] 2025-11-27 22:24:04,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,849 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 17:25:10] 2025-11-27 22:24:05,854 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-27 17:25:10] 2025-11-27 22:24:05,857 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898215759/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,858 | INFO     | extracted standard info from prmon json
[2025-11-27 17:25:10] 2025-11-27 22:24:05,858 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:25:10] 2025-11-27 22:24:05,858 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:25:10] 2025-11-27 22:24:05,870 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:25:10] 2025-11-27 22:24:05,871 | INFO     | sum of square deviations: 114776560621.18123
[2025-11-27 17:25:10] 2025-11-27 22:24:05,882 | INFO     | sum of deviations: 666274507853.6202
[2025-11-27 17:25:10] 2025-11-27 22:24:05,882 | INFO     | mean x: 1764260334.178273
[2025-11-27 17:25:10] 2025-11-27 22:24:05,883 | INFO     | mean y: 3088638.06545961
[2025-11-27 17:25:10] 2025-11-27 22:24:05,883 | INFO     | intersect: -10238389931.41317
[2025-11-27 17:25:10] 2025-11-27 22:24:05,884 | INFO     | chi2: 5.947391241948005
[2025-11-27 17:25:10] 2025-11-27 22:24:05,884 | INFO     | sum of square deviations: 112395538926.36467
[2025-11-27 17:25:10] 2025-11-27 22:24:05,895 | INFO     | sum of deviations: 917259171422.0979
[2025-11-27 17:25:10] 2025-11-27 22:24:05,895 | INFO     | mean x: 1764260181.6830294
[2025-11-27 17:25:10] 2025-11-27 22:24:05,896 | INFO     | mean y: 3104702.991584853
[2025-11-27 17:25:10] 2025-11-27 22:24:05,896 | INFO     | intersect: -14395009740.712318
[2025-11-27 17:25:10] 2025-11-27 22:24:05,896 | INFO     | chi2: 2.9032700555616566
[2025-11-27 17:25:10] 2025-11-27 22:24:05,897 | INFO     | current chi2=2.9032700555616566 (change=51.184142131353696 %)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,897 | INFO     | sum of square deviations: 110047680644.01541
[2025-11-27 17:25:10] 2025-11-27 22:24:05,908 | INFO     | sum of deviations: 1011595490057.0018
[2025-11-27 17:25:10] 2025-11-27 22:24:05,908 | INFO     | mean x: 1764260029.187853
[2025-11-27 17:25:10] 2025-11-27 22:24:05,908 | INFO     | mean y: 3110822.7443502825
[2025-11-27 17:25:10] 2025-11-27 22:24:05,908 | INFO     | intersect: -16214563901.246508
[2025-11-27 17:25:10] 2025-11-27 22:24:05,909 | INFO     | chi2: 2.3545127285418834
[2025-11-27 17:25:10] 2025-11-27 22:24:05,909 | INFO     | current chi2=2.3545127285418834 (change=18.901353181683696 %)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,909 | INFO     | right removable region: 707
[2025-11-27 17:25:10] 2025-11-27 22:24:05,910 | INFO     | sum of square deviations: 112395241856.36462
[2025-11-27 17:25:10] 2025-11-27 22:24:05,920 | INFO     | sum of deviations: 455657569407.4333
[2025-11-27 17:25:10] 2025-11-27 22:24:05,920 | INFO     | mean x: 1764260486.6830294
[2025-11-27 17:25:10] 2025-11-27 22:24:05,921 | INFO     | mean y: 3102104.07713885
[2025-11-27 17:25:10] 2025-11-27 22:24:05,921 | INFO     | intersect: -7149323851.737841
[2025-11-27 17:25:10] 2025-11-27 22:24:05,921 | INFO     | chi2: 3.7156280418012706
[2025-11-27 17:25:10] 2025-11-27 22:24:05,922 | INFO     | current chi2=3.7156280418012706 (change=37.52507796032844 %)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,922 | INFO     | sum of square deviations: 110047173368.76134
[2025-11-27 17:25:10] 2025-11-27 22:24:05,933 | INFO     | sum of deviations: 414111286829.06604
[2025-11-27 17:25:10] 2025-11-27 22:24:05,933 | INFO     | mean x: 1764260639.1850283
[2025-11-27 17:25:10] 2025-11-27 22:24:05,933 | INFO     | mean y: 3104800.9307909603
[2025-11-27 17:25:10] 2025-11-27 22:24:05,933 | INFO     | intersect: -6635868479.614871
[2025-11-27 17:25:10] 2025-11-27 22:24:05,934 | INFO     | chi2: 3.6747866457428184
[2025-11-27 17:25:10] 2025-11-27 22:24:05,934 | INFO     | current chi2=3.6747866457428184 (change=1.099178809046047 %)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,934 | INFO     | left removable region: 20
[2025-11-27 17:25:10] 2025-11-27 22:24:05,935 | INFO     | sum of square deviations: 100542767143.41821
[2025-11-27 17:25:10] 2025-11-27 22:24:05,945 | INFO     | sum of deviations: 712327084792.5791
[2025-11-27 17:25:10] 2025-11-27 22:24:05,945 | INFO     | mean x: 1764260608.6957788
[2025-11-27 17:25:10] 2025-11-27 22:24:05,945 | INFO     | mean y: 3130920.337700146
[2025-11-27 17:25:10] 2025-11-27 22:24:05,945 | INFO     | intersect: -12496332262.468822
[2025-11-27 17:25:10] 2025-11-27 22:24:05,946 | INFO     | chi2: 0.04210879098976047
[2025-11-27 17:25:10] 2025-11-27 22:24:05,946 | INFO     | current memory leak: 7.08 B/s (using 687 data points, chi2=0.04)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,946 | INFO     | could have reported an average CPU frequency of 2162 MHz (27 samples)
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | ..............................
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . Timing measurements:
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . get job = 0 s
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . initial setup = 2 s
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . payload setup = 9 s
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . stage-in = 0 s
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . payload execution = 43768 s
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . stage-out = 3 s
[2025-11-27 17:25:10] 2025-11-27 22:24:05,947 | INFO     | . log creation = 0 s
[2025-11-27 17:25:10] 2025-11-27 22:24:05,948 | INFO     | ..............................
[2025-11-27 17:25:10] 2025-11-27 22:24:06,036 | INFO     | 
[2025-11-27 17:25:10] 2025-11-27 22:24:06,036 | INFO     | job summary report
[2025-11-27 17:25:10] 2025-11-27 22:24:06,037 | INFO     | --------------------------------------------------
[2025-11-27 17:25:10] 2025-11-27 22:24:06,037 | INFO     | PanDA job id: 6898215759
[2025-11-27 17:25:10] 2025-11-27 22:24:06,037 | INFO     | task id: 47556173
[2025-11-27 17:25:10] 2025-11-27 22:24:06,037 | INFO     | errors: (none)
[2025-11-27 17:25:10] 2025-11-27 22:24:06,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:25:10] 2025-11-27 22:24:06,037 | INFO     | pilot state: finished 
[2025-11-27 17:25:10] 2025-11-27 22:24:06,038 | INFO     | transexitcode: 0
[2025-11-27 17:25:10] 2025-11-27 22:24:06,038 | INFO     | exeerrorcode: 0
[2025-11-27 17:25:10] 2025-11-27 22:24:06,038 | INFO     | exeerrordiag: 
[2025-11-27 17:25:10] 2025-11-27 22:24:06,038 | INFO     | exitcode: 0
[2025-11-27 17:25:10] 2025-11-27 22:24:06,038 | INFO     | exitmsg: OK
[2025-11-27 17:25:10] 2025-11-27 22:24:06,038 | INFO     | cpuconsumptiontime: 338683 s
[2025-11-27 17:25:10] 2025-11-27 22:24:06,039 | INFO     | nevents: 1000
[2025-11-27 17:25:10] 2025-11-27 22:24:06,039 | INFO     | neventsw: 0
[2025-11-27 17:25:10] 2025-11-27 22:24:06,039 | INFO     | pid: 1637
[2025-11-27 17:25:10] 2025-11-27 22:24:06,039 | INFO     | pgrp: 1637
[2025-11-27 17:25:10] 2025-11-27 22:24:06,039 | INFO     | corecount: 8
[2025-11-27 17:25:10] 2025-11-27 22:24:06,039 | INFO     | event service: False
[2025-11-27 17:25:10] 2025-11-27 22:24:06,040 | INFO     | sizes: {0: 2284093, 1: 2284292, 7: 2284554, 11: 2284582, 43782: 2330034, 43786: 2339028, 43788: 2339240, 43796: 2339486}
[2025-11-27 17:25:10] 2025-11-27 22:24:06,040 | INFO     | --------------------------------------------------
[2025-11-27 17:25:10] 2025-11-27 22:24:06,040 | INFO     | 
[2025-11-27 17:25:10] 2025-11-27 22:24:06,040 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 17:25:10] 2025-11-27 22:24:06,071 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,072 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,072 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,072 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,072 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,073 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,073 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,073 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,073 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,073 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,074 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,074 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,074 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,075 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:25:10] 2025-11-27 22:24:06,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:25:10] 2025-11-27 22:24:06,075 | INFO     | job 6898215759 has completed (purged errors)
[2025-11-27 17:25:10] 2025-11-27 22:24:06,076 | INFO     | overall cleanup function is called
[2025-11-27 17:25:10] 2025-11-27 22:24:07,091 | INFO     | --- collectZombieJob: --- 10, [1637]
[2025-11-27 17:25:10] 2025-11-27 22:24:07,091 | INFO     | zombie collector waiting for pid 1637
[2025-11-27 17:25:10] 2025-11-27 22:24:07,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:25:10] 2025-11-27 22:24:07,092 | INFO     | collected zombie processes
[2025-11-27 17:25:10] 2025-11-27 22:24:07,092 | INFO     | will attempt to kill all subprocesses of pid=1637
[2025-11-27 17:25:10] 2025-11-27 22:24:07,181 | INFO     | process IDs to be killed: [1637] (in reverse order)
[2025-11-27 17:25:10] 2025-11-27 22:24:07,242 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:25:10] 2025-11-27 22:24:07,242 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:25:10] 2025-11-27 22:24:07,246 | INFO     | did not find any defunct processes belonging to 1637
[2025-11-27 17:25:10] 2025-11-27 22:24:07,248 | INFO     | did not find any defunct processes belonging to 1637
[2025-11-27 17:25:10] 2025-11-27 22:24:07,251 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:25:10] 2025-11-27 22:24:07,251 | INFO     | ready for new job
[2025-11-27 17:25:10] 2025-11-27 22:24:07,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:25:10] 2025-11-27 22:24:07,255 | INFO     | ***************************************
[2025-11-27 17:25:10] 2025-11-27 22:24:07,255 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:25:10] 2025-11-27 22:24:07,255 | INFO     | ***************************************
[2025-11-27 17:25:10] 2025-11-27 22:24:07,255 | INFO     | 
[2025-11-27 17:25:10] 2025-11-27 22:24:07,256 | INFO     | architecture information:
[2025-11-27 17:25:10] 2025-11-27 22:24:07,257 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:25:10] 2025-11-27 22:24:07,276 | INFO     | cat /etc/os-release:
[2025-11-27 17:25:10] NAME="CentOS Linux"
[2025-11-27 17:25:10] VERSION="7 (Core)"
[2025-11-27 17:25:10] ID="centos"
[2025-11-27 17:25:10] ID_LIKE="rhel fedora"
[2025-11-27 17:25:10] VERSION_ID="7"
[2025-11-27 17:25:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:25:10] ANSI_COLOR="0;31"
[2025-11-27 17:25:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:25:10] HOME_URL="https://www.centos.org/"
[2025-11-27 17:25:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:25:10] 
[2025-11-27 17:25:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:25:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:25:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:25:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:25:10] 
[2025-11-27 17:25:10] 2025-11-27 22:24:07,277 | INFO     | ***************************************
[2025-11-27 17:25:10] 2025-11-27 22:24:07,780 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 17:25:10] 2025-11-27 22:24:07,799 | INFO     | sufficient remaining disk space (17485004800 B)
[2025-11-27 17:25:10] 2025-11-27 22:24:07,800 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:25:10] 2025-11-27 22:24:07,800 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:25:10] 2025-11-27 22:24:07,800 | INFO     | update_server=False
[2025-11-27 17:25:10] 2025-11-27 22:24:07,800 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:25:10] 2025-11-27 22:24:07,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:25:10] 2025-11-27 22:24:08,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:25:10] 2025-11-27 22:24:08,237 | INFO     | all payload control threads have been joined
[2025-11-27 17:25:10] 2025-11-27 22:24:08,284 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:25:10] 2025-11-27 22:24:08,284 | INFO     | aborting loop
[2025-11-27 17:25:10] 2025-11-27 22:24:08,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:25:10] 2025-11-27 22:24:08,806 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:08,807 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:08,876 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:08,890 | INFO     | all data control threads have been joined
[2025-11-27 17:25:10] 2025-11-27 22:24:08,911 | INFO     | all job control threads have been joined
[2025-11-27 17:25:10] 2025-11-27 22:24:08,968 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,243 | INFO     | [payload] control thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,272 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,290 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,497 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,625 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,626 | INFO     | [job] validate thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,889 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,895 | INFO     | [data] control thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:09,917 | INFO     | [job] control thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:10,278 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:10,769 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:12,181 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:25:10] 2025-11-27 22:24:37,717 | INFO     | PID=27638 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 17:25:10] 2025-11-27 22:24:37,717 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:25:10] 2025-11-27 22:24:37,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:25:10] 2025-11-27 22:24:37,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:25:10] 2025-11-27 22:25:04,772 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:25:10] 2025-11-27 22:25:04,962 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981533067072)>', '<ExcThread(monitor, started 139980349363968)>']
[2025-11-27 17:25:10] 2025-11-27 22:25:05,847 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:25:10] 2025-11-27 22:25:05,847 | INFO     | [monitor] control thread has ended
[2025-11-27 17:25:10] 2025-11-27 22:25:09,986 | INFO     | all workflow threads have been joined
[2025-11-27 17:25:10] 2025-11-27 22:25:09,987 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:25:10] 2025-11-27 22:25:09,987 | INFO     | traces error code: 0
[2025-11-27 17:25:10] 2025-11-27 22:25:09,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:25:10] 2025-11-27 22:25:10,110 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:25:10] 2025-11-27 22:25:10,115 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:25:10] 2025-11-27 22:25:10,120 [wrapper] pilotpid: 27638
[2025-11-27 17:25:10] 2025-11-27 22:25:10,126 [wrapper] Pilot exit status: 0
[2025-11-27 17:25:10] 2025-11-27 22:25:10,142 [wrapper] pandaids: 6898215759
[2025-11-27 17:25:10] 2025-11-27 22:25:10,194 [wrapper] cleanup supervisor_pilot 24232 27639
[2025-11-27 17:25:10] 2025-11-27 22:25:10,199 [wrapper] Test setup, not cleaning
[2025-11-27 17:25:10] 2025-11-27 22:25:10,204 [wrapper] apfmon messages muted
[2025-11-27 17:25:10] 2025-11-27 22:25:10,208 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:25:10] 2025-11-27 22:25:10,213 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:25:10]  *** Error codes and diagnostics ***
[2025-11-27 17:25:10]     "exeErrorCode": 0,
[2025-11-27 17:25:10]     "exeErrorDiag": "",
[2025-11-27 17:25:10]     "pilotErrorCode": 0,
[2025-11-27 17:25:10]     "pilotErrorDiag": "",
[2025-11-27 17:25:10]  *** Listing of results directory ***
[2025-11-27 17:25:10] total 1302984
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas    576529 Nov 26 08:40 pilot3.tar.gz
[2025-11-27 17:25:10] -rwx------ 1 boincer umatlas     36292 Nov 26 09:17 runpilot2-wrapper.sh
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas      5112 Nov 26 09:17 queuedata.json
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas       100 Nov 27 05:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:25:10] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 05:13 run_atlas
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas       105 Nov 27 05:13 job.xml
[2025-11-27 17:25:10] -rw-r--r-- 2 boincer umatlas 408368431 Nov 27 05:13 EVNT.47483658._003183.pool.root.1
[2025-11-27 17:25:10] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 05:13 start_atlas.sh
[2025-11-27 17:25:10] drwxrwx--x 2 boincer umatlas      4096 Nov 27 05:13 shared
[2025-11-27 17:25:10] -rw-r--r-- 2 boincer umatlas    590099 Nov 27 05:13 input.tar.gz
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas         0 Nov 27 05:13 boinc_lockfile
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 05:13 pandaJob.out
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas        57 Nov 27 05:13 setup.sh.local
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas    991564 Nov 27 05:13 agis_schedconf.cvmfs.json
[2025-11-27 17:25:10] drwx------ 5 boincer umatlas      4096 Nov 27 05:13 pilot3
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas       533 Nov 27 17:13 boinc_task_state.xml
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas      5911 Nov 27 17:20 init_data.xml
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas 905988272 Nov 27 17:23 HITS.47556173._001397.pool.root.1
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas      1063 Nov 27 17:23 memory_monitor_summary.json
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas        95 Nov 27 17:23 pilot_heartbeat.json
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas   1516240 Nov 27 17:23 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas   1972022 Nov 27 17:23 log.47556173._001397.job.log.tgz.1
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas      8670 Nov 27 17:24 heartbeat.json
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas        29 Nov 27 17:24 wrapper_checkpoint.txt
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 17:24 boinc_mmap_file
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas      4746 Nov 27 17:25 pilotlog.txt
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas   6017309 Nov 27 17:25 log.47556173._001397.job.log.1
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas       353 Nov 27 17:25 output.list
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas       620 Nov 27 17:25 runtime_log
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas   8007680 Nov 27 17:25 result.tar.gz
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas       667 Nov 27 17:25 vbDMDmuVVi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmexJKDm3Mcnen.diag
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas      9338 Nov 27 17:25 runtime_log.err
[2025-11-27 17:25:10] -rw-r--r-- 1 boincer umatlas     21410 Nov 27 17:25 stderr.txt
[2025-11-27 17:25:10] HITS file was successfully produced:
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas 905988272 Nov 27 17:23 shared/HITS.pool.root.1
[2025-11-27 17:25:10]  *** Contents of shared directory: ***
[2025-11-27 17:25:10] total 1291976
[2025-11-27 17:25:10] -rw-r--r-- 2 boincer umatlas 408368431 Nov 27 05:13 ATLAS.root_0
[2025-11-27 17:25:10] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 05:13 start_atlas.sh
[2025-11-27 17:25:10] -rw-r--r-- 2 boincer umatlas    590099 Nov 27 05:13 input.tar.gz
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas 905988272 Nov 27 17:23 HITS.pool.root.1
[2025-11-27 17:25:10] -rw------- 1 boincer umatlas   8007680 Nov 27 17:25 result.tar.gz
17:25:11 (23863): run_atlas exited; CPU time 336489.669984
17:25:11 (23863): called boinc_finish(0)

</stderr_txt>
]]>

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