Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:38:23 (4084395): wrapper (7.7.26015): starting
15:38:23 (4084395): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 15:38:23] Arguments: --nthreads 3
[2025-11-27 15:38:23] Threads: 3
[2025-11-27 15:38:23] Checking for CVMFS
[2025-11-27 15:38:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 15:38:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 15:38:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 15:38:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 15:38:23] 2.9.2.0 3252557 419 69384 153368 2 57 36024416 36864000 0 130560 0 2478748 99.999 18521 11826 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 15:38:23] CVMFS is ok
[2025-11-27 15:38:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 15:38:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 15:38:23] Further information can be found at the LHC@home message board.
[2025-11-27 15:38:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 15:38:23] Checking for apptainer binary...
[2025-11-27 15:38:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 15:38:23] Running /usr/bin/apptainer --version
[2025-11-27 15:38:23] apptainer version 1.4.1-1.1
[2025-11-27 15:38:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 15:38:23] thA335
[2025-11-27 15:38:23] apptainer works
[2025-11-27 15:38:23] Set ATHENA_PROC_NUMBER=3
[2025-11-27 15:38:23] Set ATHENA_CORE_NUMBER=3
[2025-11-27 15:38:23] Starting ATLAS job with PandaID=6895328679
[2025-11-27 15:38:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:42:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:42:41] 2025-11-27 14:41:53,731 | INFO     | update_server=False
[2025-11-27 15:42:41] 2025-11-27 14:41:53,731 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:42:41] 2025-11-27 14:41:53,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:42:41] 2025-11-27 14:41:53,732 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:42:41] 2025-11-27 14:41:53,732 | INFO     | aborting loop
[2025-11-27 15:42:41] 2025-11-27 14:41:54,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:42:41] 2025-11-27 14:41:54,533 | INFO     | all job control threads have been joined
[2025-11-27 15:42:41] 2025-11-27 14:41:54,662 | INFO     | all data control threads have been joined
[2025-11-27 15:42:41] 2025-11-27 14:41:54,737 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:54,738 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:54,739 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:54,941 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:55,064 | INFO     | all payload control threads have been joined
[2025-11-27 15:42:41] 2025-11-27 14:41:55,168 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:55,539 | INFO     | [job] control thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:55,668 | INFO     | [data] control thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:55,680 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:55,917 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:55,958 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:56,039 | INFO     | [job] validate thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:56,070 | INFO     | [payload] control thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:56,124 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:56,187 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:56,414 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:41:56,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:42:41] 2025-11-27 14:42:00,738 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:42:41] 2025-11-27 14:42:23,691 | INFO     | PID=4088123 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:42:41] 2025-11-27 14:42:23,691 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:42:41] 2025-11-27 14:42:23,691 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:42:41] 2025-11-27 14:42:23,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:42:41] 2025-11-27 14:42:34,750 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:42:41] 2025-11-27 14:42:36,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064680400704)>', '<ExcThread(monitor, started 140064008939264)>']
[2025-11-27 15:42:41] 2025-11-27 14:42:36,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:42:41] 2025-11-27 14:42:36,761 | INFO     | [monitor] control thread has ended
[2025-11-27 15:42:41] 2025-11-27 14:42:41,603 | INFO     | all workflow threads have been joined
[2025-11-27 15:42:41] 2025-11-27 14:42:41,604 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:42:41] 2025-11-27 14:42:41,604 | INFO     | traces error code: 0
[2025-11-27 15:42:41] 2025-11-27 14:42:41,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:42:41] 2025-11-27 14:42:41,651 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:42:41] 2025-11-27 14:42:41,654 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:42:41] 2025-11-27 14:42:41,658 [wrapper] pilotpid: 4088123
[2025-11-27 15:42:41] 2025-11-27 14:42:41,661 [wrapper] Pilot exit status: 0
[2025-11-27 15:42:41] 2025-11-27 14:42:41,668 [wrapper] pandaids: 6895328679
[2025-11-27 15:42:41] 2025-11-27 14:42:41,684 [wrapper] cleanup supervisor_pilot 4088129 4088124
[2025-11-27 15:42:41] 2025-11-27 14:42:41,687 [wrapper] Test setup, not cleaning
[2025-11-27 15:42:41] 2025-11-27 14:42:41,689 [wrapper] apfmon messages muted
[2025-11-27 15:42:41] 2025-11-27 14:42:41,692 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:42:41] 2025-11-27 14:42:41,695 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:42:41]  *** Error codes and diagnostics ***
[2025-11-27 15:42:41]     "exeErrorCode": 65,
[2025-11-27 15:42:41]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 15:42:41]     "pilotErrorCode": 1305,
[2025-11-27 15:42:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 15:42:41]  *** Listing of results directory ***
[2025-11-27 15:42:41] total 402740
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc    576529 Nov 21 18:05 pilot3.tar.gz
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc      5112 Nov 21 18:46 queuedata.json
[2025-11-27 15:42:41] -rwx------ 1 boinc boinc     36292 Nov 21 18:48 runpilot2-wrapper.sh
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc       100 Nov 27 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:42:41] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 15:38 run_atlas
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc       105 Nov 27 15:38 job.xml
[2025-11-27 15:42:41] -rw-r--r-- 2 boinc boinc 408209242 Nov 27 15:38 EVNT.47483658._000085.pool.root.1
[2025-11-27 15:42:41] -rw-r--r-- 2 boinc boinc    590101 Nov 27 15:38 input.tar.gz
[2025-11-27 15:42:41] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:38 start_atlas.sh
[2025-11-27 15:42:41] drwxrwx--x 2 boinc boinc      4096 Nov 27 15:38 shared
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:38 boinc_setup_complete
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc      6196 Nov 27 15:38 init_data.xml
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc         0 Nov 27 15:38 boinc_lockfile
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc      2783 Nov 27 15:38 pandaJob.out
[2025-11-27 15:42:41] -rw------- 1 boinc boinc    991580 Nov 27 15:38 agis_schedconf.cvmfs.json
[2025-11-27 15:42:41] -rw------- 1 boinc boinc   1516240 Nov 27 15:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:42:41] drwx------ 5 boinc boinc      4096 Nov 27 15:38 pilot3
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc       522 Nov 27 15:39 boinc_task_state.xml
[2025-11-27 15:42:41] -rw------- 1 boinc boinc       966 Nov 27 15:39 memory_monitor_summary.json
[2025-11-27 15:42:41] -rw------- 1 boinc boinc     55761 Nov 27 15:39 log.47556137._000850.job.log.tgz.1
[2025-11-27 15:42:41] -rw------- 1 boinc boinc        95 Nov 27 15:41 pilot_heartbeat.json
[2025-11-27 15:42:41] -rw------- 1 boinc boinc      8390 Nov 27 15:41 heartbeat.json
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc        22 Nov 27 15:42 wrapper_checkpoint.txt
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc      8192 Nov 27 15:42 boinc_mmap_file
[2025-11-27 15:42:41] -rw------- 1 boinc boinc      4752 Nov 27 15:42 pilotlog.txt
[2025-11-27 15:42:41] -rw------- 1 boinc boinc     93863 Nov 27 15:42 log.47556137._000850.job.log.1
[2025-11-27 15:42:41] -rw------- 1 boinc boinc       186 Nov 27 15:42 output.list
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc       620 Nov 27 15:42 runtime_log
[2025-11-27 15:42:41] -rw------- 1 boinc boinc    174080 Nov 27 15:42 result.tar.gz
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc      8744 Nov 27 15:42 runtime_log.err
[2025-11-27 15:42:41] -rw------- 1 boinc boinc       648 Nov 27 15:42 R6QNDmvPkg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWbJKDmnwGJGm.diag
[2025-11-27 15:42:41] -rw-r--r-- 1 boinc boinc      7790 Nov 27 15:42 stderr.txt
[2025-11-27 15:42:41] No HITS result produced
[2025-11-27 15:42:41]  *** Contents of shared directory: ***
[2025-11-27 15:42:41] total 399416
[2025-11-27 15:42:41] -rw-r--r-- 2 boinc boinc 408209242 Nov 27 15:38 ATLAS.root_0
[2025-11-27 15:42:41] -rw-r--r-- 2 boinc boinc    590101 Nov 27 15:38 input.tar.gz
[2025-11-27 15:42:41] -rw-r--r-- 2 boinc boinc     15847 Nov 27 15:38 start_atlas.sh
[2025-11-27 15:42:41] -rw------- 1 boinc boinc    174080 Nov 27 15:42 result.tar.gz
15:42:43 (4084395): run_atlas exited; CPU time 31.638661
15:42:43 (4084395): called boinc_finish(0)

</stderr_txt>
]]>

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