Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:52:43 (346940): wrapper (7.7.26015): starting
05:52:43 (346940): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:52:43] Arguments: --nthreads 8
[2025-11-27 05:52:43] Threads: 8
[2025-11-27 05:52:43] Checking for CVMFS
[2025-11-27 05:52:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:52:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:52:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:52:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:52:46] 2.13.3.0 16090 31346 442228 153360 0 1005 27466504 32935937 71921 16776704 0 447998081 99.630 402910794 51979 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 05:52:46] CVMFS is ok
[2025-11-27 05:52:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:52:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:52:46] Further information can be found at the LHC@home message board.
[2025-11-27 05:52:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:52:46] Checking for apptainer binary...
[2025-11-27 05:52:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:52:46] Running /usr/bin/apptainer --version
[2025-11-27 05:52:46] apptainer version 1.4.4-1.el9
[2025-11-27 05:52:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:52:46] c7-9-15.aglt2.org
[2025-11-27 05:52:46] apptainer works
[2025-11-27 05:52:46] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:52:46] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:52:47] Starting ATLAS job with PandaID=6895327483
[2025-11-27 05:52:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:21:33 (1184240): wrapper (7.7.26015): starting
07:21:33 (1184240): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 07:21:33] Arguments: --nthreads 9
[2025-11-27 07:21:33] Threads: 9
[2025-11-27 07:21:33] This job has been restarted, cleaning up previous attempt
[2025-11-27 07:21:33] Checking for CVMFS
[2025-11-27 07:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:21:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:21:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:21:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:21:34] 2.13.3.0 16090 31435 416452 153364 3 594 32811448 32935936 61665 16776704 0 449680082 99.631 406360735 52228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 07:21:34] CVMFS is ok
[2025-11-27 07:21:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:21:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:21:34] Further information can be found at the LHC@home message board.
[2025-11-27 07:21:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:21:34] Checking for apptainer binary...
[2025-11-27 07:21:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:21:34] Running /usr/bin/apptainer --version
[2025-11-27 07:21:34] apptainer version 1.4.4-1.el9
[2025-11-27 07:21:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:21:34] c7-9-15.aglt2.org
[2025-11-27 07:21:34] apptainer works
[2025-11-27 07:21:34] Set ATHENA_PROC_NUMBER=9
[2025-11-27 07:21:34] Set ATHENA_CORE_NUMBER=9
[2025-11-27 07:21:34] Starting ATLAS job with PandaID=6895327483
[2025-11-27 07:21:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:02:53]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:02:53] 2025-11-27 22:02:00,833 | INFO     | monitor loop #1993: job 0:6895327483 is in state 'finished'
[2025-11-27 17:02:53] 2025-11-27 22:02:00,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:02:53] 2025-11-27 22:02:01,727 | INFO     | time since job start (34817s) is within the limit (172800.0s)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,251 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:02:53] 2025-11-27 22:02:03,260 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3794.4868828124995
[2025-11-27 17:02:53] 2025-11-27 22:02:03,273 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895327483/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,274 | INFO     | extracted standard info from prmon json
[2025-11-27 17:02:53] 2025-11-27 22:02:03,274 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:02:53] 2025-11-27 22:02:03,274 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:02:53] 2025-11-27 22:02:03,280 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:02:53] 2025-11-27 22:02:03,297 | INFO     | sum of square deviations: 57425561096.15606
[2025-11-27 17:02:53] 2025-11-27 22:02:03,302 | INFO     | sum of deviations: 577041760103.7136
[2025-11-27 17:02:53] 2025-11-27 22:02:03,302 | INFO     | mean x: 1764263488.1245613
[2025-11-27 17:02:53] 2025-11-27 22:02:03,307 | INFO     | mean y: 3051544.356140351
[2025-11-27 17:02:53] 2025-11-27 22:02:03,307 | INFO     | intersect: -17725181128.363194
[2025-11-27 17:02:53] 2025-11-27 22:02:03,308 | INFO     | chi2: 4.033917070389444
[2025-11-27 17:02:53] 2025-11-27 22:02:03,308 | INFO     | sum of square deviations: 55927836716.61942
[2025-11-27 17:02:53] 2025-11-27 22:02:03,321 | INFO     | sum of deviations: 739184138587.0358
[2025-11-27 17:02:53] 2025-11-27 22:02:03,321 | INFO     | mean x: 1764263335.6371682
[2025-11-27 17:02:53] 2025-11-27 22:02:03,321 | INFO     | mean y: 3068030.722123894
[2025-11-27 17:02:53] 2025-11-27 22:02:03,321 | INFO     | intersect: -23314756340.01957
[2025-11-27 17:02:53] 2025-11-27 22:02:03,321 | INFO     | chi2: 1.8051607277992077
[2025-11-27 17:02:53] 2025-11-27 22:02:03,321 | INFO     | current chi2=1.8051607277992077 (change=55.25042542272857 %)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,322 | INFO     | sum of square deviations: 54456185237.13562
[2025-11-27 17:02:53] 2025-11-27 22:02:03,325 | INFO     | sum of deviations: 744358262181.297
[2025-11-27 17:02:53] 2025-11-27 22:02:03,326 | INFO     | mean x: 1764263183.1392858
[2025-11-27 17:02:53] 2025-11-27 22:02:03,326 | INFO     | mean y: 3068556.2910714285
[2025-11-27 17:02:53] 2025-11-27 22:02:03,326 | INFO     | intersect: -24112536885.282425
[2025-11-27 17:02:53] 2025-11-27 22:02:03,326 | INFO     | chi2: 1.7355993443027542
[2025-11-27 17:02:53] 2025-11-27 22:02:03,326 | INFO     | current chi2=1.7355993443027542 (change=3.853473124316216 %)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,326 | INFO     | right removable region: 559
[2025-11-27 17:02:53] 2025-11-27 22:02:03,326 | INFO     | sum of square deviations: 55927410331.16107
[2025-11-27 17:02:53] 2025-11-27 22:02:03,330 | INFO     | sum of deviations: 451704213913.34686
[2025-11-27 17:02:53] 2025-11-27 22:02:03,330 | INFO     | mean x: 1764263640.6336284
[2025-11-27 17:02:53] 2025-11-27 22:02:03,330 | INFO     | mean y: 3064264.5185840707
[2025-11-27 17:02:53] 2025-11-27 22:02:03,330 | INFO     | intersect: -14246215582.510015
[2025-11-27 17:02:53] 2025-11-27 22:02:03,331 | INFO     | chi2: 2.4953629366425396
[2025-11-27 17:02:53] 2025-11-27 22:02:03,331 | INFO     | current chi2=2.4953629366425396 (change=38.14045025963731 %)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,331 | INFO     | sum of square deviations: 54455574205.85506
[2025-11-27 17:02:53] 2025-11-27 22:02:03,335 | INFO     | sum of deviations: 408268939361.57153
[2025-11-27 17:02:53] 2025-11-27 22:02:03,335 | INFO     | mean x: 1764263793.1410713
[2025-11-27 17:02:53] 2025-11-27 22:02:03,335 | INFO     | mean y: 3068762.714285714
[2025-11-27 17:02:53] 2025-11-27 22:02:03,335 | INFO     | intersect: -13224119052.014189
[2025-11-27 17:02:53] 2025-11-27 22:02:03,336 | INFO     | chi2: 2.4231247512033853
[2025-11-27 17:02:53] 2025-11-27 22:02:03,336 | INFO     | current chi2=2.4231247512033853 (change=2.8948969457865434 %)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,336 | INFO     | left removable region: 20
[2025-11-27 17:02:53] 2025-11-27 22:02:03,336 | INFO     | sum of square deviations: 48556479447.18747
[2025-11-27 17:02:53] 2025-11-27 22:02:03,339 | INFO     | sum of deviations: 513219284364.43933
[2025-11-27 17:02:53] 2025-11-27 22:02:03,340 | INFO     | mean x: 1764263762.658627
[2025-11-27 17:02:53] 2025-11-27 22:02:03,340 | INFO     | mean y: 3092807.486085343
[2025-11-27 17:02:53] 2025-11-27 22:02:03,340 | INFO     | intersect: -18644350252.8493
[2025-11-27 17:02:53] 2025-11-27 22:02:03,340 | INFO     | chi2: 0.07807662826889683
[2025-11-27 17:02:53] 2025-11-27 22:02:03,340 | INFO     | current memory leak: 10.57 B/s (using 539 data points, chi2=0.08)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | could have reported an average CPU frequency of 3797 MHz (22 samples)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | ..............................
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . Timing measurements:
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . get job = 0 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . initial setup = 0 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . payload setup = 5 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . stage-in = 0 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . payload execution = 34766 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . stage-out = 7 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | . log creation = 1 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,341 | INFO     | ..............................
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | 
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | job summary report
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | --------------------------------------------------
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | PanDA job id: 6895327483
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | task id: 47556137
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | errors: (none)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | pilot state: finished 
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | transexitcode: 0
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | exeerrorcode: 0
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | exeerrordiag: 
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | exitcode: 0
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | exitmsg: OK
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | cpuconsumptiontime: 140121 s
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | nevents: 1000
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | neventsw: 0
[2025-11-27 17:02:53] 2025-11-27 22:02:03,434 | INFO     | pid: 1294230
[2025-11-27 17:02:53] 2025-11-27 22:02:03,435 | INFO     | pgrp: 1294230
[2025-11-27 17:02:53] 2025-11-27 22:02:03,435 | INFO     | corecount: 9
[2025-11-27 17:02:53] 2025-11-27 22:02:03,435 | INFO     | event service: False
[2025-11-27 17:02:53] 2025-11-27 22:02:03,435 | INFO     | sizes: {0: 2284140, 1: 2284339, 5: 2284601, 11: 2284657, 34776: 2325202, 34777: 2325201, 34785: 2334435, 34803: 2334625}
[2025-11-27 17:02:53] 2025-11-27 22:02:03,435 | INFO     | --------------------------------------------------
[2025-11-27 17:02:53] 2025-11-27 22:02:03,435 | INFO     | 
[2025-11-27 17:02:53] 2025-11-27 22:02:03,435 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 17:02:53] 2025-11-27 22:02:03,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,486 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | job 6895327483 has completed (purged errors)
[2025-11-27 17:02:53] 2025-11-27 22:02:03,487 | INFO     | overall cleanup function is called
[2025-11-27 17:02:53] 2025-11-27 22:02:04,502 | INFO     | --- collectZombieJob: --- 10, [1294230]
[2025-11-27 17:02:53] 2025-11-27 22:02:04,503 | INFO     | zombie collector waiting for pid 1294230
[2025-11-27 17:02:53] 2025-11-27 22:02:04,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:02:53] 2025-11-27 22:02:04,503 | INFO     | collected zombie processes
[2025-11-27 17:02:53] 2025-11-27 22:02:04,503 | INFO     | will attempt to kill all subprocesses of pid=1294230
[2025-11-27 17:02:53] 2025-11-27 22:02:05,463 | INFO     | process IDs to be killed: [1294230] (in reverse order)
[2025-11-27 17:02:53] 2025-11-27 22:02:05,752 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:02:53] 2025-11-27 22:02:05,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:02:53] 2025-11-27 22:02:05,789 | INFO     | did not find any defunct processes belonging to 1294230
[2025-11-27 17:02:53] 2025-11-27 22:02:05,819 | INFO     | did not find any defunct processes belonging to 1294230
[2025-11-27 17:02:53] 2025-11-27 22:02:05,820 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:02:53] 2025-11-27 22:02:05,821 | INFO     | ready for new job
[2025-11-27 17:02:53] 2025-11-27 22:02:05,821 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:02:53] 2025-11-27 22:02:05,824 | INFO     | ***************************************
[2025-11-27 17:02:53] 2025-11-27 22:02:05,824 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:02:53] 2025-11-27 22:02:05,824 | INFO     | ***************************************
[2025-11-27 17:02:53] 2025-11-27 22:02:05,824 | INFO     | 
[2025-11-27 17:02:53] 2025-11-27 22:02:05,829 | INFO     | architecture information:
[2025-11-27 17:02:53] 2025-11-27 22:02:05,839 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:02:53] 2025-11-27 22:02:05,960 | INFO     | cat /etc/os-release:
[2025-11-27 17:02:53] NAME="CentOS Linux"
[2025-11-27 17:02:53] VERSION="7 (Core)"
[2025-11-27 17:02:53] ID="centos"
[2025-11-27 17:02:53] ID_LIKE="rhel fedora"
[2025-11-27 17:02:53] VERSION_ID="7"
[2025-11-27 17:02:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:02:53] ANSI_COLOR="0;31"
[2025-11-27 17:02:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:02:53] HOME_URL="https://www.centos.org/"
[2025-11-27 17:02:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:02:53] 
[2025-11-27 17:02:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:02:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:02:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:02:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:02:53] 
[2025-11-27 17:02:53] 2025-11-27 22:02:05,960 | INFO     | ***************************************
[2025-11-27 17:02:53] 2025-11-27 22:02:06,463 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 17:02:53] 2025-11-27 22:02:06,534 | INFO     | sufficient remaining disk space (64203259904 B)
[2025-11-27 17:02:53] 2025-11-27 22:02:06,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:02:53] 2025-11-27 22:02:06,535 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:02:53] 2025-11-27 22:02:06,535 | INFO     | update_server=False
[2025-11-27 17:02:53] 2025-11-27 22:02:06,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:02:53] 2025-11-27 22:02:06,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:02:53] 2025-11-27 22:02:06,866 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:02:53] 2025-11-27 22:02:06,867 | INFO     | aborting loop
[2025-11-27 17:02:53] 2025-11-27 22:02:06,961 | INFO     | all payload control threads have been joined
[2025-11-27 17:02:53] 2025-11-27 22:02:07,073 | INFO     | all data control threads have been joined
[2025-11-27 17:02:53] 2025-11-27 22:02:07,486 | INFO     | all job control threads have been joined
[2025-11-27 17:02:53] 2025-11-27 22:02:07,541 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:07,589 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:07,875 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:07,951 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:07,967 | INFO     | [payload] control thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:07,971 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,011 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,031 | INFO     | [job] validate thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,078 | INFO     | [data] control thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,218 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:02:53] 2025-11-27 22:02:08,492 | INFO     | [job] control thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,542 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,903 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:08,908 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:09,453 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:09,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:02:53] 2025-11-27 22:02:13,485 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:02:53] 2025-11-27 22:02:36,883 | INFO     | PID=1223231 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:02:53] 2025-11-27 22:02:36,886 | INFO     | .. there are 101 such processes running
[2025-11-27 17:02:53] 2025-11-27 22:02:36,887 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:02:53] 2025-11-27 22:02:36,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:02:53] 2025-11-27 22:02:36,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:02:53] 2025-11-27 22:02:44,529 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:02:53] 2025-11-27 22:02:46,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140345143392064)>', '<ExcThread(monitor, started 140344784033536)>']
[2025-11-27 17:02:53] 2025-11-27 22:02:46,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:02:53] 2025-11-27 22:02:46,952 | INFO     | [monitor] control thread has ended
[2025-11-27 17:02:53] 2025-11-27 22:02:51,491 | INFO     | all workflow threads have been joined
[2025-11-27 17:02:53] 2025-11-27 22:02:51,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:02:53] 2025-11-27 22:02:51,492 | INFO     | traces error code: 0
[2025-11-27 17:02:53] 2025-11-27 22:02:51,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:02:53] 2025-11-27 22:02:52,576 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:02:53] 2025-11-27 22:02:52,659 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:02:53] 2025-11-27 22:02:52,696 [wrapper] pilotpid: 1223231
[2025-11-27 17:02:53] 2025-11-27 22:02:52,729 [wrapper] Pilot exit status: 0
[2025-11-27 17:02:53] 2025-11-27 22:02:52,837 [wrapper] pandaids: 6895327483 6895327483
[2025-11-27 17:02:53] 2025-11-27 22:02:53,224 [wrapper] cleanup supervisor_pilot 2356883 1223232
[2025-11-27 17:02:53] 2025-11-27 22:02:53,247 [wrapper] Test setup, not cleaning
[2025-11-27 17:02:53] 2025-11-27 22:02:53,270 [wrapper] apfmon messages muted
[2025-11-27 17:02:53] 2025-11-27 22:02:53,278 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:02:53] 2025-11-27 22:02:53,291 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:02:53]  *** Error codes and diagnostics ***
[2025-11-27 17:02:53]     "exeErrorCode": 0,
[2025-11-27 17:02:53]     "exeErrorDiag": "",
[2025-11-27 17:02:53]     "pilotErrorCode": 0,
[2025-11-27 17:02:53]     "pilotErrorDiag": "",
[2025-11-27 17:02:53]  *** Listing of results directory ***
[2025-11-27 17:02:53] total 1719964
[2025-11-27 17:02:53] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 10:53 pilot3.tar.gz
[2025-11-27 17:02:53] -rwx------. 1 boincer umatlas     36292 Nov 21 11:01 runpilot2-wrapper.sh
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 11:01 queuedata.json
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas       100 Nov 27 05:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:02:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 05:52 run_atlas
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas       105 Nov 27 05:52 job.xml
[2025-11-27 17:02:53] -rw-r--r--. 3 boincer umatlas 409556844 Nov 27 05:52 EVNT.47483658._000052.pool.root.1
[2025-11-27 17:02:53] -rw-r--r--. 3 boincer umatlas 409556844 Nov 27 05:52 ATLAS.root_0
[2025-11-27 17:02:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 05:52 start_atlas.sh
[2025-11-27 17:02:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 05:52 shared
[2025-11-27 17:02:53] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 05:52 input.tar.gz
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas         0 Nov 27 05:52 boinc_lockfile
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 07:21 pandaJob.out
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas        57 Nov 27 07:21 setup.sh.local
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas    991566 Nov 27 07:21 agis_schedconf.cvmfs.json
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas       532 Nov 27 16:54 boinc_task_state.xml
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas      7173 Nov 27 16:56 init_data.xml
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas 925808880 Nov 27 17:00 HITS.47556137._000517.pool.root.1
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas      1064 Nov 27 17:01 memory_monitor_summary.json
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas   1889564 Nov 27 17:01 log.47556137._000517.job.log.tgz.1
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas      8577 Nov 27 17:02 heartbeat.json
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas        96 Nov 27 17:02 pilot_heartbeat.json
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:02 wrapper_checkpoint.txt
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:02 boinc_mmap_file
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas      4825 Nov 27 17:02 pilotlog.txt
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas   4302382 Nov 27 17:02 log.47556137._000517.job.log.1
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas       353 Nov 27 17:02 output.list
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:02 runtime_log
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas   6215680 Nov 27 17:02 result.tar.gz
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas      9423 Nov 27 17:02 runtime_log.err
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas       784 Nov 27 17:02 3XcNDm2kig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzWJKDmBaKHPn.diag
[2025-11-27 17:02:53] -rw-r--r--. 1 boincer umatlas     23510 Nov 27 17:02 stderr.txt
[2025-11-27 17:02:53] HITS file was successfully produced:
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas 925808880 Nov 27 17:00 shared/HITS.pool.root.1
[2025-11-27 17:02:53]  *** Contents of shared directory: ***
[2025-11-27 17:02:53] total 1310748
[2025-11-27 17:02:53] -rw-r--r--. 3 boincer umatlas 409556844 Nov 27 05:52 ATLAS.root_0
[2025-11-27 17:02:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 05:52 start_atlas.sh
[2025-11-27 17:02:53] -rw-r--r--. 2 boincer umatlas    590100 Nov 27 05:52 input.tar.gz
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas 925808880 Nov 27 17:00 HITS.pool.root.1
[2025-11-27 17:02:53] -rw-------. 1 boincer umatlas   6215680 Nov 27 17:02 result.tar.gz
17:02:55 (1184240): run_atlas exited; CPU time 140601.430163
17:02:55 (1184240): called boinc_finish(0)

</stderr_txt>
]]>

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