Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:18:39 (21843): wrapper (7.7.26015): starting
05:18:39 (21843): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:18:39] Arguments: --nthreads 8
[2025-11-27 05:18:39] Threads: 8
[2025-11-27 05:18:39] Checking for CVMFS
[2025-11-27 05:18:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:18:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:18:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:18:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:18:39] 2.11.2.0 2830 58466 82076 153360 0 71 11904691 20275200 1 130560 0 12333513 99.757 3897947 28010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 05:18:39] CVMFS is ok
[2025-11-27 05:18:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:18:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:18:39] Further information can be found at the LHC@home message board.
[2025-11-27 05:18:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:18:39] Checking for apptainer binary...
[2025-11-27 05:18:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:18:39] Running /usr/bin/apptainer --version
[2025-11-27 05:18:39] apptainer version 1.3.2-1.el7
[2025-11-27 05:18:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:18:41] c-204-15.aglt2.org
[2025-11-27 05:18:41] apptainer works
[2025-11-27 05:18:41] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:18:41] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:18:41] Starting ATLAS job with PandaID=6892537111
[2025-11-27 05:18:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:13:39 (9469): wrapper (7.7.26015): starting
11:13:39 (9469): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 11:13:39] Arguments: --nthreads 8
[2025-11-27 11:13:39] Threads: 8
[2025-11-27 11:13:39] This job has been restarted, cleaning up previous attempt
[2025-11-27 11:13:39] Checking for CVMFS
[2025-11-27 11:13:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:13:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:13:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:13:40] 2.11.2.0 2830 58821 86264 153372 1 56 12367716 20275200 1 130560 0 12478257 99.760 3911048 28037 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 11:13:40] CVMFS is ok
[2025-11-27 11:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:13:40] Further information can be found at the LHC@home message board.
[2025-11-27 11:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:13:40] Checking for apptainer binary...
[2025-11-27 11:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:13:40] Running /usr/bin/apptainer --version
[2025-11-27 11:13:40] apptainer version 1.3.2-1.el7
[2025-11-27 11:13:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:13:42] c-204-15.aglt2.org
[2025-11-27 11:13:42] apptainer works
[2025-11-27 11:13:42] Set ATHENA_PROC_NUMBER=8
[2025-11-27 11:13:42] Set ATHENA_CORE_NUMBER=8
[2025-11-27 11:13:42] Starting ATLAS job with PandaID=6892537111
[2025-11-27 11:13:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 23:36:34]  *** The last 200 lines of the pilot log: ***
[2025-11-27 23:36:34] 2025-11-28 04:35:59,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:36:34] 2025-11-28 04:36:00,892 | INFO     | time since job start (44520s) is within the limit (172800.0s)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,644 | INFO     | monitor loop #3264: job 0:6892537111 is in state 'finished'
[2025-11-27 23:36:34] 2025-11-28 04:36:01,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,665 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 23:36:34] 2025-11-28 04:36:01,670 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1995.125
[2025-11-27 23:36:34] 2025-11-28 04:36:01,672 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892537111/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,673 | INFO     | extracted standard info from prmon json
[2025-11-27 23:36:34] 2025-11-28 04:36:01,673 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 23:36:34] 2025-11-28 04:36:01,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 23:36:34] 2025-11-28 04:36:01,687 | INFO     | fitting pss+swap vs Time
[2025-11-27 23:36:34] 2025-11-28 04:36:01,688 | INFO     | sum of square deviations: 120627219354.24794
[2025-11-27 23:36:34] 2025-11-28 04:36:01,701 | INFO     | sum of deviations: 726260616793.7671
[2025-11-27 23:36:34] 2025-11-28 04:36:01,701 | INFO     | mean x: 1764282307.160274
[2025-11-27 23:36:34] 2025-11-28 04:36:01,701 | INFO     | mean y: 3161169.164383562
[2025-11-27 23:36:34] 2025-11-28 04:36:01,701 | INFO     | intersect: -10619057957.297049
[2025-11-27 23:36:34] 2025-11-28 04:36:01,703 | INFO     | chi2: 7.077884100523007
[2025-11-27 23:36:34] 2025-11-28 04:36:01,704 | INFO     | sum of square deviations: 118165655089.55322
[2025-11-27 23:36:34] 2025-11-28 04:36:01,716 | INFO     | sum of deviations: 1025405509895.7292
[2025-11-27 23:36:34] 2025-11-28 04:36:01,717 | INFO     | mean x: 1764282154.6648276
[2025-11-27 23:36:34] 2025-11-28 04:36:01,717 | INFO     | mean y: 3179703.7972413795
[2025-11-27 23:36:34] 2025-11-28 04:36:01,717 | INFO     | intersect: -15306722661.93646
[2025-11-27 23:36:34] 2025-11-28 04:36:01,718 | INFO     | chi2: 3.2576943581269764
[2025-11-27 23:36:34] 2025-11-28 04:36:01,718 | INFO     | current chi2=3.2576943581269764 (change=53.97361256754324 %)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,719 | INFO     | sum of square deviations: 115737812387.32796
[2025-11-27 23:36:34] 2025-11-28 04:36:01,731 | INFO     | sum of deviations: 1149047749567.744
[2025-11-27 23:36:34] 2025-11-28 04:36:01,732 | INFO     | mean x: 1764282002.1694446
[2025-11-27 23:36:34] 2025-11-28 04:36:01,732 | INFO     | mean y: 3187462.461111111
[2025-11-27 23:36:34] 2025-11-28 04:36:01,732 | INFO     | intersect: -17512646147.831276
[2025-11-27 23:36:34] 2025-11-28 04:36:01,733 | INFO     | chi2: 2.4546888235411863
[2025-11-27 23:36:34] 2025-11-28 04:36:01,733 | INFO     | current chi2=2.4546888235411863 (change=24.649505027460005 %)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,733 | INFO     | right removable region: 719
[2025-11-27 23:36:34] 2025-11-28 04:36:01,734 | INFO     | sum of square deviations: 118165361069.5532
[2025-11-27 23:36:34] 2025-11-28 04:36:01,746 | INFO     | sum of deviations: 503173925842.5888
[2025-11-27 23:36:34] 2025-11-28 04:36:01,746 | INFO     | mean x: 1764282459.6648276
[2025-11-27 23:36:34] 2025-11-28 04:36:01,746 | INFO     | mean y: 3174966.940689655
[2025-11-27 23:36:34] 2025-11-28 04:36:01,746 | INFO     | intersect: -7509525231.235302
[2025-11-27 23:36:34] 2025-11-28 04:36:01,747 | INFO     | chi2: 4.7988835268938095
[2025-11-27 23:36:34] 2025-11-28 04:36:01,747 | INFO     | current chi2=4.7988835268938095 (change=32.19889646767167 %)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,748 | INFO     | sum of square deviations: 115737356901.33199
[2025-11-27 23:36:34] 2025-11-28 04:36:01,759 | INFO     | sum of deviations: 459208202930.42096
[2025-11-27 23:36:34] 2025-11-28 04:36:01,759 | INFO     | mean x: 1764282612.1652777
[2025-11-27 23:36:34] 2025-11-28 04:36:01,759 | INFO     | mean y: 3177726.9208333334
[2025-11-27 23:36:34] 2025-11-28 04:36:01,759 | INFO     | intersect: -6996922063.5426035
[2025-11-27 23:36:34] 2025-11-28 04:36:01,760 | INFO     | chi2: 4.759692177314759
[2025-11-27 23:36:34] 2025-11-28 04:36:01,760 | INFO     | current chi2=4.759692177314759 (change=0.8166764073229825 %)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,761 | INFO     | left removable region: 20
[2025-11-27 23:36:34] 2025-11-28 04:36:01,761 | INFO     | sum of square deviations: 105903122517.28181
[2025-11-27 23:36:34] 2025-11-28 04:36:01,772 | INFO     | sum of deviations: 830029941473.2534
[2025-11-27 23:36:34] 2025-11-28 04:36:01,772 | INFO     | mean x: 1764282581.6752503
[2025-11-27 23:36:34] 2025-11-28 04:36:01,772 | INFO     | mean y: 3208805.124463519
[2025-11-27 23:36:34] 2025-11-28 04:36:01,772 | INFO     | intersect: -13824592804.513807
[2025-11-27 23:36:34] 2025-11-28 04:36:01,773 | INFO     | chi2: 0.0686552325898043
[2025-11-27 23:36:34] 2025-11-28 04:36:01,773 | INFO     | current memory leak: 7.84 B/s (using 699 data points, chi2=0.07)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,774 | INFO     | could have reported an average CPU frequency of 2170 MHz (28 samples)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,774 | INFO     | ..............................
[2025-11-27 23:36:34] 2025-11-28 04:36:01,774 | INFO     | . Timing measurements:
[2025-11-27 23:36:34] 2025-11-28 04:36:01,774 | INFO     | . get job = 0 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,774 | INFO     | . initial setup = 2 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,774 | INFO     | . payload setup = 9 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,775 | INFO     | . stage-in = 0 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,775 | INFO     | . payload execution = 44479 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,775 | INFO     | . stage-out = 4 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,775 | INFO     | . log creation = 0 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,775 | INFO     | ..............................
[2025-11-27 23:36:34] 2025-11-28 04:36:01,864 | INFO     | 
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | job summary report
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | --------------------------------------------------
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | PanDA job id: 6892537111
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | task id: 47493029
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | errors: (none)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | pilot state: finished 
[2025-11-27 23:36:34] 2025-11-28 04:36:01,865 | INFO     | transexitcode: 0
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | exeerrorcode: 0
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | exeerrordiag: 
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | exitcode: 0
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | exitmsg: OK
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | cpuconsumptiontime: 343096 s
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | nevents: 1000
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | neventsw: 0
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | pid: 19589
[2025-11-27 23:36:34] 2025-11-28 04:36:01,866 | INFO     | pgrp: 19589
[2025-11-27 23:36:34] 2025-11-28 04:36:01,867 | INFO     | corecount: 8
[2025-11-27 23:36:34] 2025-11-28 04:36:01,867 | INFO     | event service: False
[2025-11-27 23:36:34] 2025-11-28 04:36:01,867 | INFO     | sizes: {0: 2284077, 1: 2284332, 7: 2284594, 12: 2284622, 44492: 2330313, 44496: 2339307, 44497: 2339491, 44504: 2339737}
[2025-11-27 23:36:34] 2025-11-28 04:36:01,867 | INFO     | --------------------------------------------------
[2025-11-27 23:36:34] 2025-11-28 04:36:01,867 | INFO     | 
[2025-11-27 23:36:34] 2025-11-28 04:36:01,867 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 23:36:34] 2025-11-28 04:36:01,895 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,896 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,896 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,896 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,899 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,899 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,899 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,899 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 23:36:34] 2025-11-28 04:36:01,900 | INFO     | job 6892537111 has completed (purged errors)
[2025-11-27 23:36:34] 2025-11-28 04:36:01,900 | INFO     | overall cleanup function is called
[2025-11-27 23:36:34] 2025-11-28 04:36:02,915 | INFO     | --- collectZombieJob: --- 10, [19589]
[2025-11-27 23:36:34] 2025-11-28 04:36:02,915 | INFO     | zombie collector waiting for pid 19589
[2025-11-27 23:36:34] 2025-11-28 04:36:02,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 23:36:34] 2025-11-28 04:36:02,916 | INFO     | collected zombie processes
[2025-11-27 23:36:34] 2025-11-28 04:36:02,916 | INFO     | will attempt to kill all subprocesses of pid=19589
[2025-11-27 23:36:34] 2025-11-28 04:36:03,009 | INFO     | process IDs to be killed: [19589] (in reverse order)
[2025-11-27 23:36:34] 2025-11-28 04:36:03,069 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 23:36:34] 2025-11-28 04:36:03,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 23:36:34] 2025-11-28 04:36:03,074 | INFO     | did not find any defunct processes belonging to 19589
[2025-11-27 23:36:34] 2025-11-28 04:36:03,077 | INFO     | did not find any defunct processes belonging to 19589
[2025-11-27 23:36:34] 2025-11-28 04:36:03,080 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 23:36:34] 2025-11-28 04:36:03,080 | INFO     | ready for new job
[2025-11-27 23:36:34] 2025-11-28 04:36:03,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 23:36:34] 2025-11-28 04:36:03,084 | INFO     | ***************************************
[2025-11-27 23:36:34] 2025-11-28 04:36:03,084 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 23:36:34] 2025-11-28 04:36:03,084 | INFO     | ***************************************
[2025-11-27 23:36:34] 2025-11-28 04:36:03,085 | INFO     | 
[2025-11-27 23:36:34] 2025-11-28 04:36:03,085 | INFO     | architecture information:
[2025-11-27 23:36:34] 2025-11-28 04:36:03,086 | INFO     | executing command: cat /etc/os-release
[2025-11-27 23:36:34] 2025-11-28 04:36:03,104 | INFO     | cat /etc/os-release:
[2025-11-27 23:36:34] NAME="CentOS Linux"
[2025-11-27 23:36:34] VERSION="7 (Core)"
[2025-11-27 23:36:34] ID="centos"
[2025-11-27 23:36:34] ID_LIKE="rhel fedora"
[2025-11-27 23:36:34] VERSION_ID="7"
[2025-11-27 23:36:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 23:36:34] ANSI_COLOR="0;31"
[2025-11-27 23:36:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 23:36:34] HOME_URL="https://www.centos.org/"
[2025-11-27 23:36:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 23:36:34] 
[2025-11-27 23:36:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 23:36:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 23:36:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 23:36:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 23:36:34] 
[2025-11-27 23:36:34] 2025-11-28 04:36:03,104 | INFO     | ***************************************
[2025-11-27 23:36:34] 2025-11-28 04:36:03,607 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 23:36:34] 2025-11-28 04:36:03,629 | INFO     | sufficient remaining disk space (17482907648 B)
[2025-11-27 23:36:34] 2025-11-28 04:36:03,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 23:36:34] 2025-11-28 04:36:03,630 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 23:36:34] 2025-11-28 04:36:03,630 | INFO     | update_server=False
[2025-11-27 23:36:34] 2025-11-28 04:36:03,630 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 23:36:34] 2025-11-28 04:36:03,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:36:34] 2025-11-28 04:36:03,631 | INFO     | aborting loop
[2025-11-27 23:36:34] 2025-11-28 04:36:03,631 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 23:36:34] 2025-11-28 04:36:03,940 | INFO     | all payload control threads have been joined
[2025-11-27 23:36:34] 2025-11-28 04:36:04,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 23:36:34] 2025-11-28 04:36:04,636 | INFO     | [job] retrieve thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:04,637 | INFO     | [job] job monitor thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:04,637 | INFO     | [job] queue monitor thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:04,638 | INFO     | all data control threads have been joined
[2025-11-27 23:36:34] 2025-11-28 04:36:04,851 | INFO     | all job control threads have been joined
[2025-11-27 23:36:34] 2025-11-28 04:36:04,904 | INFO     | [payload] failed_post thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:04,946 | INFO     | [payload] control thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:04,959 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 23:36:34] 2025-11-28 04:36:05,405 | INFO     | [payload] validate_post thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,466 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,643 | INFO     | [data] control thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,857 | INFO     | [job] control thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,899 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,907 | INFO     | [job] validate thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,966 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:05,968 | INFO     | [data] copytool_in thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:06,604 | INFO     | [data] copytool_out thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:09,358 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 23:36:34] 2025-11-28 04:36:14,066 | INFO     | [monitor] cgroup control has ended
[2025-11-27 23:36:34] 2025-11-28 04:36:15,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555241285440)>', '<ExcThread(monitor, started 140554641843968)>']
[2025-11-27 23:36:34] 2025-11-28 04:36:20,078 | INFO     | all workflow threads have been joined
[2025-11-27 23:36:34] 2025-11-28 04:36:20,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 23:36:34] 2025-11-28 04:36:20,079 | INFO     | traces error code: 0
[2025-11-27 23:36:34] 2025-11-28 04:36:20,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 23:36:34] 2025-11-28 04:36:34,107 | INFO     | PID=13182 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 23:36:34] 2025-11-28 04:36:34,108 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 23:36:34] 2025-11-28 04:36:34,108 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 23:36:34] 2025-11-28 04:36:34,108 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 23:36:34] 2025-11-28 04:36:34,108 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 23:36:34] 2025-11-28 04:36:34,108 | INFO     | [monitor] control thread has ended
[2025-11-27 23:36:34] 2025-11-28 04:36:34,219 [wrapper] ==== pilot stdout END ====
[2025-11-27 23:36:34] 2025-11-28 04:36:34,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 23:36:34] 2025-11-28 04:36:34,229 [wrapper] pilotpid: 13182
[2025-11-27 23:36:34] 2025-11-28 04:36:34,233 [wrapper] Pilot exit status: 0
[2025-11-27 23:36:34] 2025-11-28 04:36:34,251 [wrapper] pandaids: 6892537111 6892537111
[2025-11-27 23:36:34] 2025-11-28 04:36:34,295 [wrapper] cleanup supervisor_pilot 23571 13183
[2025-11-27 23:36:34] 2025-11-28 04:36:34,300 [wrapper] Test setup, not cleaning
[2025-11-27 23:36:34] 2025-11-28 04:36:34,305 [wrapper] apfmon messages muted
[2025-11-27 23:36:34] 2025-11-28 04:36:34,310 [wrapper] ==== wrapper stdout END ====
[2025-11-27 23:36:34] 2025-11-28 04:36:34,315 [wrapper] ==== wrapper stderr END ====
[2025-11-27 23:36:34]  *** Error codes and diagnostics ***
[2025-11-27 23:36:34]     "exeErrorCode": 0,
[2025-11-27 23:36:34]     "exeErrorDiag": "",
[2025-11-27 23:36:34]     "pilotErrorCode": 0,
[2025-11-27 23:36:34]     "pilotErrorDiag": "",
[2025-11-27 23:36:34]  *** Listing of results directory ***
[2025-11-27 23:36:34] total 1706264
[2025-11-27 23:36:34] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:27 pilot3.tar.gz
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:30 queuedata.json
[2025-11-27 23:36:34] -rwx------ 1 boincer umatlas     36292 Nov 19 02:30 runpilot2-wrapper.sh
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas       100 Nov 27 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 23:36:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 05:18 run_atlas
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas       105 Nov 27 05:18 job.xml
[2025-11-27 23:36:34] -rw-r--r-- 3 boincer umatlas 408640484 Nov 27 05:18 EVNT.47493027._000206.pool.root.1
[2025-11-27 23:36:34] -rw-r--r-- 3 boincer umatlas 408640484 Nov 27 05:18 ATLAS.root_0
[2025-11-27 23:36:34] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 05:18 start_atlas.sh
[2025-11-27 23:36:34] drwxrwx--x 2 boincer umatlas      4096 Nov 27 05:18 shared
[2025-11-27 23:36:34] -rw-r--r-- 2 boincer umatlas    590100 Nov 27 05:18 input.tar.gz
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas         0 Nov 27 05:18 boinc_lockfile
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas      2773 Nov 27 11:13 pandaJob.out
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas    991572 Nov 27 11:13 agis_schedconf.cvmfs.json
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas       533 Nov 27 23:25 boinc_task_state.xml
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas      5912 Nov 27 23:27 init_data.xml
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas 909834786 Nov 27 23:35 HITS.47493029._002019.pool.root.1
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas      1062 Nov 27 23:35 memory_monitor_summary.json
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas   1516240 Nov 27 23:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas   1975787 Nov 27 23:35 log.47493029._002019.job.log.tgz.1
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas      8661 Nov 27 23:36 heartbeat.json
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 23:36 boinc_mmap_file
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas        29 Nov 27 23:36 wrapper_checkpoint.txt
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas        96 Nov 27 23:36 pilot_heartbeat.json
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas       745 Nov 27 23:36 pilotlog.txt
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas   6114438 Nov 27 23:36 log.47493029._002019.job.log.1
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas       353 Nov 27 23:36 output.list
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas       620 Nov 27 23:36 runtime_log
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas   8110080 Nov 27 23:36 result.tar.gz
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas       793 Nov 27 23:36 xMMMDmOprf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmk1FKDmZKkJpn.diag
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas      8789 Nov 27 23:36 runtime_log.err
[2025-11-27 23:36:34] -rw-r--r-- 1 boincer umatlas     23486 Nov 27 23:36 stderr.txt
[2025-11-27 23:36:34] HITS file was successfully produced:
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas 909834786 Nov 27 23:35 shared/HITS.pool.root.1
[2025-11-27 23:36:34]  *** Contents of shared directory: ***
[2025-11-27 23:36:34] total 1296100
[2025-11-27 23:36:34] -rw-r--r-- 3 boincer umatlas 408640484 Nov 27 05:18 ATLAS.root_0
[2025-11-27 23:36:34] -rw-r--r-- 2 boincer umatlas     15120 Nov 27 05:18 start_atlas.sh
[2025-11-27 23:36:34] -rw-r--r-- 2 boincer umatlas    590100 Nov 27 05:18 input.tar.gz
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas 909834786 Nov 27 23:35 HITS.pool.root.1
[2025-11-27 23:36:34] -rw------- 1 boincer umatlas   8110080 Nov 27 23:36 result.tar.gz
23:36:35 (9469): run_atlas exited; CPU time 340922.067466
23:36:35 (9469): called boinc_finish(0)

</stderr_txt>
]]>

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