Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:03:59 (3919345): wrapper (7.7.26015): starting
11:03:59 (3919345): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 11:03:59] Arguments: --nthreads 3
[2025-11-27 11:03:59] Threads: 3
[2025-11-27 11:03:59] Checking for CVMFS
[2025-11-27 11:03:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 11:03:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 11:03:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 11:03:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 11:03:59] 2.9.2.0 3252557 145 63196 153358 0 88 35963455 36864001 0 130560 0 2003358 100.000 6620 20244 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 11:03:59] CVMFS is ok
[2025-11-27 11:03:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 11:03:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 11:03:59] Further information can be found at the LHC@home message board.
[2025-11-27 11:03:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 11:03:59] Checking for apptainer binary...
[2025-11-27 11:03:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 11:03:59] Running /usr/bin/apptainer --version
[2025-11-27 11:03:59] apptainer version 1.4.1-1.1
[2025-11-27 11:03:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 11:04:00] thA335
[2025-11-27 11:04:00] apptainer works
[2025-11-27 11:04:00] Set ATHENA_PROC_NUMBER=3
[2025-11-27 11:04:00] Set ATHENA_CORE_NUMBER=3
[2025-11-27 11:04:00] Starting ATLAS job with PandaID=6896922397
[2025-11-27 11:04:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 11:08:17]  *** The last 200 lines of the pilot log: ***
[2025-11-27 11:08:17] 2025-11-27 10:07:25,303 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 11:08:17] 2025-11-27 10:07:25,316 | INFO     | sufficient remaining disk space (826459291648 B)
[2025-11-27 11:08:17] 2025-11-27 10:07:25,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 11:08:17] 2025-11-27 10:07:25,317 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 11:08:17] 2025-11-27 10:07:25,317 | INFO     | update_server=False
[2025-11-27 11:08:17] 2025-11-27 10:07:25,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 11:08:17] 2025-11-27 10:07:25,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:08:17] 2025-11-27 10:07:25,317 | INFO     | aborting loop
[2025-11-27 11:08:17] 2025-11-27 10:07:25,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 11:08:17] 2025-11-27 10:07:25,475 | INFO     | all job control threads have been joined
[2025-11-27 11:08:17] 2025-11-27 10:07:26,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 11:08:17] 2025-11-27 10:07:26,316 | INFO     | all data control threads have been joined
[2025-11-27 11:08:17] 2025-11-27 10:07:26,319 | INFO     | [job] job monitor thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:26,322 | INFO     | [job] retrieve thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:26,323 | INFO     | [job] queue monitor thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:26,482 | INFO     | [job] control thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:26,513 | INFO     | [payload] failed_post thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:26,615 | INFO     | all payload control threads have been joined
[2025-11-27 11:08:17] 2025-11-27 10:07:27,254 | INFO     | [payload] validate_post thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,322 | INFO     | [data] control thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,378 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,602 | INFO     | [job] validate thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,621 | INFO     | [payload] control thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,632 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,685 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,690 | INFO     | [data] copytool_in thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:27,744 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:28,226 | INFO     | [data] copytool_out thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:28,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 11:08:17] 2025-11-27 10:07:32,335 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 11:08:17] 2025-11-27 10:07:55,881 | INFO     | PID=3923074 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 11:08:17] 2025-11-27 10:07:55,881 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 11:08:17] 2025-11-27 10:07:55,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 11:08:17] 2025-11-27 10:07:55,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 11:08:17] 2025-11-27 10:08:10,996 | INFO     | [monitor] cgroup control has ended
[2025-11-27 11:08:17] 2025-11-27 10:08:12,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140405160163136)>', '<ExcThread(monitor, started 140404661925632)>']
[2025-11-27 11:08:17] 2025-11-27 10:08:12,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 11:08:17] 2025-11-27 10:08:12,967 | INFO     | [monitor] control thread has ended
[2025-11-27 11:08:17] 2025-11-27 10:08:17,119 | INFO     | all workflow threads have been joined
[2025-11-27 11:08:17] 2025-11-27 10:08:17,119 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 11:08:17] 2025-11-27 10:08:17,120 | INFO     | traces error code: 0
[2025-11-27 11:08:17] 2025-11-27 10:08:17,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 11:08:17] 2025-11-27 10:08:17,166 [wrapper] ==== pilot stdout END ====
[2025-11-27 11:08:17] 2025-11-27 10:08:17,170 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 11:08:17] 2025-11-27 10:08:17,173 [wrapper] pilotpid: 3923074
[2025-11-27 11:08:17] 2025-11-27 10:08:17,175 [wrapper] Pilot exit status: 0
[2025-11-27 11:08:17] 2025-11-27 10:08:17,182 [wrapper] pandaids: 6896922397
[2025-11-27 11:08:17] 2025-11-27 10:08:17,198 [wrapper] cleanup supervisor_pilot 3923080 3923075
[2025-11-27 11:08:17] 2025-11-27 10:08:17,200 [wrapper] Test setup, not cleaning
[2025-11-27 11:08:17] 2025-11-27 10:08:17,203 [wrapper] apfmon messages muted
[2025-11-27 11:08:17] 2025-11-27 10:08:17,205 [wrapper] ==== wrapper stdout END ====
[2025-11-27 11:08:17] 2025-11-27 10:08:17,208 [wrapper] ==== wrapper stderr END ====
[2025-11-27 11:08:17]  *** Error codes and diagnostics ***
[2025-11-27 11:08:17]     "exeErrorCode": 65,
[2025-11-27 11:08:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 11:08:17]     "pilotErrorCode": 1305,
[2025-11-27 11:08:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-27 11:08:17]  *** Listing of results directory ***
[2025-11-27 11:08:17] total 403200
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc    576529 Nov 25 11:51 pilot3.tar.gz
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc      5112 Nov 25 12:09 queuedata.json
[2025-11-27 11:08:17] -rwx------ 1 boinc boinc     36292 Nov 25 12:10 runpilot2-wrapper.sh
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc       100 Nov 27 11:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 11:08:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 11:03 run_atlas
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc       105 Nov 27 11:03 job.xml
[2025-11-27 11:08:17] -rw-r--r-- 2 boinc boinc 408672155 Nov 27 11:03 EVNT.47483658._002142.pool.root.1
[2025-11-27 11:08:17] -rw-r--r-- 2 boinc boinc    590108 Nov 27 11:03 input.tar.gz
[2025-11-27 11:08:17] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:03 start_atlas.sh
[2025-11-27 11:08:17] drwxrwx--x 2 boinc boinc      4096 Nov 27 11:03 shared
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:03 boinc_setup_complete
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc      6196 Nov 27 11:03 init_data.xml
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc         0 Nov 27 11:03 boinc_lockfile
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc      2784 Nov 27 11:04 pandaJob.out
[2025-11-27 11:08:17] -rw------- 1 boinc boinc    991551 Nov 27 11:04 agis_schedconf.cvmfs.json
[2025-11-27 11:08:17] -rw------- 1 boinc boinc   1516240 Nov 27 11:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 11:08:17] drwx------ 5 boinc boinc      4096 Nov 27 11:04 pilot3
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc       523 Nov 27 11:05 boinc_task_state.xml
[2025-11-27 11:08:17] -rw------- 1 boinc boinc       949 Nov 27 11:05 memory_monitor_summary.json
[2025-11-27 11:08:17] -rw------- 1 boinc boinc     56138 Nov 27 11:05 log.47556161._001254.job.log.tgz.1
[2025-11-27 11:08:17] -rw------- 1 boinc boinc        95 Nov 27 11:07 pilot_heartbeat.json
[2025-11-27 11:08:17] -rw------- 1 boinc boinc      8401 Nov 27 11:07 heartbeat.json
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc        22 Nov 27 11:08 wrapper_checkpoint.txt
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc      8192 Nov 27 11:08 boinc_mmap_file
[2025-11-27 11:08:17] -rw------- 1 boinc boinc      4752 Nov 27 11:08 pilotlog.txt
[2025-11-27 11:08:17] -rw------- 1 boinc boinc     93473 Nov 27 11:08 log.47556161._001254.job.log.1
[2025-11-27 11:08:17] -rw------- 1 boinc boinc       186 Nov 27 11:08 output.list
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc       620 Nov 27 11:08 runtime_log
[2025-11-27 11:08:17] -rw------- 1 boinc boinc    174080 Nov 27 11:08 result.tar.gz
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc      8744 Nov 27 11:08 runtime_log.err
[2025-11-27 11:08:17] -rw------- 1 boinc boinc       649 Nov 27 11:08 nD1KDmX75h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvQJKDmt74s6n.diag
[2025-11-27 11:08:17] -rw-r--r-- 1 boinc boinc      8238 Nov 27 11:08 stderr.txt
[2025-11-27 11:08:17] No HITS result produced
[2025-11-27 11:08:17]  *** Contents of shared directory: ***
[2025-11-27 11:08:17] total 399868
[2025-11-27 11:08:17] -rw-r--r-- 2 boinc boinc 408672155 Nov 27 11:03 ATLAS.root_0
[2025-11-27 11:08:17] -rw-r--r-- 2 boinc boinc    590108 Nov 27 11:03 input.tar.gz
[2025-11-27 11:08:17] -rw-r--r-- 2 boinc boinc     15847 Nov 27 11:03 start_atlas.sh
[2025-11-27 11:08:17] -rw------- 1 boinc boinc    174080 Nov 27 11:08 result.tar.gz
11:08:19 (3919345): run_atlas exited; CPU time 31.621470
11:08:19 (3919345): called boinc_finish(0)

</stderr_txt>
]]>

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