Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:55:45 (2084601): wrapper (7.7.26015): starting
04:55:45 (2084601): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 04:55:45] Arguments: --nthreads 8
[2025-11-27 04:55:45] Threads: 8
[2025-11-27 04:55:45] Checking for CVMFS
[2025-11-27 04:55:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 04:55:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 04:55:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 04:55:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 04:55:48] 2.13.3.0 22787 31287 257776 153358 3 784 37308829 40960000 69495 16776704 0 454685174 99.749 277625446 47714 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 04:55:48] CVMFS is ok
[2025-11-27 04:55:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 04:55:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 04:55:48] Further information can be found at the LHC@home message board.
[2025-11-27 04:55:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 04:55:48] Checking for apptainer binary...
[2025-11-27 04:55:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 04:55:48] Running /usr/bin/apptainer --version
[2025-11-27 04:55:48] apptainer version 1.4.4-1.el9
[2025-11-27 04:55:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 04:55:48] c8-6-11.aglt2.org
[2025-11-27 04:55:48] apptainer works
[2025-11-27 04:55:48] Set ATHENA_PROC_NUMBER=8
[2025-11-27 04:55:48] Set ATHENA_CORE_NUMBER=8
[2025-11-27 04:55:48] Starting ATLAS job with PandaID=6896577829
[2025-11-27 04:55:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:46:20]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:46:20] 2025-11-27 20:45:28,281 | INFO     | time since job start (38905s) is within the limit (172800.0s)
[2025-11-27 15:46:20] 2025-11-27 20:45:28,343 | INFO     | monitor loop #2147: job 0:6896577829 is in state 'finished'
[2025-11-27 15:46:20] 2025-11-27 20:45:28,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:46:20] 2025-11-27 20:45:30,288 | INFO     | time since job start (38907s) is within the limit (172800.0s)
[2025-11-27 15:46:20] 2025-11-27 20:45:30,318 | INFO     | 38913s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 15:46:20] 2025-11-27 20:45:30,867 | INFO     | monitor loop #2148: job 0:6896577829 is in state 'finished'
[2025-11-27 15:46:20] 2025-11-27 20:45:30,867 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:46:20] 2025-11-27 20:45:32,326 | INFO     | time since job start (38909s) is within the limit (172800.0s)
[2025-11-27 15:46:20] 2025-11-27 20:45:33,373 | INFO     | monitor loop #2149: job 0:6896577829 is in state 'finished'
[2025-11-27 15:46:20] 2025-11-27 20:45:33,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:46:20] 2025-11-27 20:45:34,332 | INFO     | time since job start (38911s) is within the limit (172800.0s)
[2025-11-27 15:46:20] 2025-11-27 20:45:35,886 | INFO     | monitor loop #2150: job 0:6896577829 is in state 'finished'
[2025-11-27 15:46:20] 2025-11-27 20:45:35,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:46:20] 2025-11-27 20:45:36,338 | INFO     | time since job start (38913s) is within the limit (172800.0s)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,346 | INFO     | time since job start (38915s) is within the limit (172800.0s)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,393 | INFO     | monitor loop #2151: job 0:6896577829 is in state 'finished'
[2025-11-27 15:46:20] 2025-11-27 20:45:38,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,420 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 15:46:20] 2025-11-27 20:45:38,425 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.1883203125
[2025-11-27 15:46:20] 2025-11-27 20:45:38,446 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896577829/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,446 | INFO     | extracted standard info from prmon json
[2025-11-27 15:46:20] 2025-11-27 20:45:38,446 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:46:20] 2025-11-27 20:45:38,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:46:20] 2025-11-27 20:45:38,452 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:46:20] 2025-11-27 20:45:38,453 | INFO     | sum of square deviations: 79391453502.30554
[2025-11-27 15:46:20] 2025-11-27 20:45:38,457 | INFO     | sum of deviations: 75943153962.87933
[2025-11-27 15:46:20] 2025-11-27 20:45:38,457 | INFO     | mean x: 1764256924.9669292
[2025-11-27 15:46:20] 2025-11-27 20:45:38,457 | INFO     | mean y: 2784908.518110236
[2025-11-27 15:46:20] 2025-11-27 20:45:38,457 | INFO     | intersect: -1684843033.4359775
[2025-11-27 15:46:20] 2025-11-27 20:45:38,458 | INFO     | chi2: 28.200003799748547
[2025-11-27 15:46:20] 2025-11-27 20:45:38,458 | INFO     | sum of square deviations: 77530870995.09348
[2025-11-27 15:46:20] 2025-11-27 20:45:38,463 | INFO     | sum of deviations: 294951629970.23444
[2025-11-27 15:46:20] 2025-11-27 20:45:38,463 | INFO     | mean x: 1764256772.4746032
[2025-11-27 15:46:20] 2025-11-27 20:45:38,463 | INFO     | mean y: 2802864.1396825397
[2025-11-27 15:46:20] 2025-11-27 20:45:38,463 | INFO     | intersect: -6708980507.420025
[2025-11-27 15:46:20] 2025-11-27 20:45:38,463 | INFO     | chi2: 24.270402690212773
[2025-11-27 15:46:20] 2025-11-27 20:45:38,464 | INFO     | current chi2=24.270402690212773 (change=13.934753829965135 %)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,464 | INFO     | right removable region: 629
[2025-11-27 15:46:20] 2025-11-27 20:45:38,464 | INFO     | sum of square deviations: 77530496455.09344
[2025-11-27 15:46:20] 2025-11-27 20:45:38,469 | INFO     | sum of deviations: -175909752543.58014
[2025-11-27 15:46:20] 2025-11-27 20:45:38,469 | INFO     | mean x: 1764257077.4746032
[2025-11-27 15:46:20] 2025-11-27 20:45:38,469 | INFO     | mean y: 2805543.1825396824
[2025-11-27 15:46:20] 2025-11-27 20:45:38,469 | INFO     | intersect: 4005746838.696823
[2025-11-27 15:46:20] 2025-11-27 20:45:38,469 | INFO     | chi2: 23.849154791025576
[2025-11-27 15:46:20] 2025-11-27 20:45:38,469 | INFO     | current chi2=23.849154791025576 (change=15.428540505238395 %)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,469 | INFO     | left removable region: 10
[2025-11-27 15:46:20] 2025-11-27 20:45:38,470 | INFO     | sum of square deviations: 73539659070.96017
[2025-11-27 15:46:20] 2025-11-27 20:45:38,474 | INFO     | sum of deviations: -137378284413.17128
[2025-11-27 15:46:20] 2025-11-27 20:45:38,474 | INFO     | mean x: 1764257046.9919224
[2025-11-27 15:46:20] 2025-11-27 20:45:38,474 | INFO     | mean y: 2846484.7657512114
[2025-11-27 15:46:20] 2025-11-27 20:45:38,474 | INFO     | intersect: 3298627420.406598
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | chi2: 15.735430901807478
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | current memory leak: -1.87 B/s (using 619 data points, chi2=15.74)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | could have reported an average CPU frequency of 3795 MHz (25 samples)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | ..............................
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . Timing measurements:
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . get job = 0 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . initial setup = 5 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . payload setup = 54 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . stage-in = 0 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . payload execution = 38763 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . stage-out = 6 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,475 | INFO     | . log creation = 1 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,476 | INFO     | ..............................
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | 
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | job summary report
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | --------------------------------------------------
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | PanDA job id: 6896577829
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | task id: 47556161
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | errors: (none)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | pilot state: finished 
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | transexitcode: 0
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | exeerrorcode: 0
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | exeerrordiag: 
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | exitcode: 0
[2025-11-27 15:46:20] 2025-11-27 20:45:38,611 | INFO     | exitmsg: OK
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | cpuconsumptiontime: 135633 s
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | nevents: 1000
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | neventsw: 0
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | pid: 2116075
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | pgrp: 2116075
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | corecount: 8
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | event service: False
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | sizes: {0: 2283433, 1: 2284289, 2: 2284317, 12: 2284317, 23: 2284345, 32: 2284635, 34: 2284791, 38821: 2326668, 38829: 2335662, 38831: 2335718, 38847: 2336028}
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | --------------------------------------------------
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | 
[2025-11-27 15:46:20] 2025-11-27 20:45:38,612 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:46:20] 2025-11-27 20:45:38,702 | INFO     | job 6896577829 has completed (purged errors)
[2025-11-27 15:46:20] 2025-11-27 20:45:38,702 | INFO     | overall cleanup function is called
[2025-11-27 15:46:20] 2025-11-27 20:45:39,720 | INFO     | --- collectZombieJob: --- 10, [2116075]
[2025-11-27 15:46:20] 2025-11-27 20:45:39,720 | INFO     | zombie collector waiting for pid 2116075
[2025-11-27 15:46:20] 2025-11-27 20:45:39,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:46:20] 2025-11-27 20:45:39,721 | INFO     | collected zombie processes
[2025-11-27 15:46:20] 2025-11-27 20:45:39,721 | INFO     | will attempt to kill all subprocesses of pid=2116075
[2025-11-27 15:46:20] 2025-11-27 20:45:45,357 | INFO     | process IDs to be killed: [2116075] (in reverse order)
[2025-11-27 15:46:20] 2025-11-27 20:45:45,651 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:46:20] 2025-11-27 20:45:45,652 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:46:20] 2025-11-27 20:45:46,054 | INFO     | did not find any defunct processes belonging to 2116075
[2025-11-27 15:46:20] 2025-11-27 20:45:46,145 | INFO     | did not find any defunct processes belonging to 2116075
[2025-11-27 15:46:20] 2025-11-27 20:45:46,175 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:46:20] 2025-11-27 20:45:46,175 | INFO     | ready for new job
[2025-11-27 15:46:20] 2025-11-27 20:45:46,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:46:20] 2025-11-27 20:45:46,178 | INFO     | ***************************************
[2025-11-27 15:46:20] 2025-11-27 20:45:46,178 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:46:20] 2025-11-27 20:45:46,178 | INFO     | ***************************************
[2025-11-27 15:46:20] 2025-11-27 20:45:46,178 | INFO     | 
[2025-11-27 15:46:20] 2025-11-27 20:45:46,191 | INFO     | architecture information:
[2025-11-27 15:46:20] 2025-11-27 20:45:46,208 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:46:20] 2025-11-27 20:45:46,312 | INFO     | cat /etc/os-release:
[2025-11-27 15:46:20] NAME="CentOS Linux"
[2025-11-27 15:46:20] VERSION="7 (Core)"
[2025-11-27 15:46:20] ID="centos"
[2025-11-27 15:46:20] ID_LIKE="rhel fedora"
[2025-11-27 15:46:20] VERSION_ID="7"
[2025-11-27 15:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:46:20] ANSI_COLOR="0;31"
[2025-11-27 15:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:46:20] HOME_URL="https://www.centos.org/"
[2025-11-27 15:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:46:20] 
[2025-11-27 15:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:46:20] 
[2025-11-27 15:46:20] 2025-11-27 20:45:46,312 | INFO     | ***************************************
[2025-11-27 15:46:20] 2025-11-27 20:45:46,815 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 15:46:20] 2025-11-27 20:45:46,953 | INFO     | sufficient remaining disk space (161815199744 B)
[2025-11-27 15:46:20] 2025-11-27 20:45:46,953 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:46:20] 2025-11-27 20:45:46,953 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:46:20] 2025-11-27 20:45:46,953 | INFO     | update_server=False
[2025-11-27 15:46:20] 2025-11-27 20:45:46,953 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:46:20] 2025-11-27 20:45:46,954 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:46:20] 2025-11-27 20:45:46,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:46:20] 2025-11-27 20:45:47,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:46:20] 2025-11-27 20:45:47,082 | INFO     | aborting loop
[2025-11-27 15:46:20] 2025-11-27 20:45:47,380 | INFO     | all payload control threads have been joined
[2025-11-27 15:46:20] 2025-11-27 20:45:47,672 | INFO     | all data control threads have been joined
[2025-11-27 15:46:20] 2025-11-27 20:45:47,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:46:20] 2025-11-27 20:45:47,969 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,056 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,056 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,077 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,090 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,282 | INFO     | all job control threads have been joined
[2025-11-27 15:46:20] 2025-11-27 20:45:48,386 | INFO     | [payload] control thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,558 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,558 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,563 | INFO     | [job] validate thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,679 | INFO     | [data] control thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,905 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,953 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:48,970 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:49,020 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:49,288 | INFO     | [job] control thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:45:51,000 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:46:20] 2025-11-27 20:46:13,318 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:46:20] 2025-11-27 20:46:13,362 | INFO     | PID=2096107 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:46:20] 2025-11-27 20:46:13,363 | INFO     | .. there are 85 such processes running
[2025-11-27 15:46:20] 2025-11-27 20:46:13,363 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:46:20] 2025-11-27 20:46:13,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:46:20] 2025-11-27 20:46:13,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:46:20] 2025-11-27 20:46:15,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339769849664)>', '<ExcThread(monitor, started 140339037849344)>']
[2025-11-27 15:46:20] 2025-11-27 20:46:15,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:46:20] 2025-11-27 20:46:15,382 | INFO     | [monitor] control thread has ended
[2025-11-27 15:46:20] 2025-11-27 20:46:20,116 | INFO     | all workflow threads have been joined
[2025-11-27 15:46:20] 2025-11-27 20:46:20,116 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:46:20] 2025-11-27 20:46:20,116 | INFO     | traces error code: 0
[2025-11-27 15:46:20] 2025-11-27 20:46:20,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:46:20] 2025-11-27 20:46:20,429 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:46:20] 2025-11-27 20:46:20,442 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:46:20] 2025-11-27 20:46:20,457 [wrapper] pilotpid: 2096107
[2025-11-27 15:46:20] 2025-11-27 20:46:20,478 [wrapper] Pilot exit status: 0
[2025-11-27 15:46:20] 2025-11-27 20:46:20,585 [wrapper] pandaids: 6896577829
[2025-11-27 15:46:20] 2025-11-27 20:46:20,747 [wrapper] cleanup supervisor_pilot 2813557 2096108
[2025-11-27 15:46:20] 2025-11-27 20:46:20,750 [wrapper] Test setup, not cleaning
[2025-11-27 15:46:20] 2025-11-27 20:46:20,752 [wrapper] apfmon messages muted
[2025-11-27 15:46:20] 2025-11-27 20:46:20,755 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:46:20] 2025-11-27 20:46:20,764 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:46:20]  *** Error codes and diagnostics ***
[2025-11-27 15:46:20]     "exeErrorCode": 0,
[2025-11-27 15:46:20]     "exeErrorDiag": "",
[2025-11-27 15:46:20]     "pilotErrorCode": 0,
[2025-11-27 15:46:20]     "pilotErrorDiag": "",
[2025-11-27 15:46:20]  *** Listing of results directory ***
[2025-11-27 15:46:20] total 1327624
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 00:23 queuedata.json
[2025-11-27 15:46:20] -rwx------. 1 boincer umatlas     36292 Nov 25 00:24 runpilot2-wrapper.sh
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas       100 Nov 27 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:46:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 04:55 run_atlas
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas       105 Nov 27 04:55 job.xml
[2025-11-27 15:46:20] -rw-r--r--. 2 boincer umatlas 412027301 Nov 27 04:55 EVNT.47483658._002102.pool.root.1
[2025-11-27 15:46:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:55 start_atlas.sh
[2025-11-27 15:46:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 04:55 shared
[2025-11-27 15:46:20] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 04:55 input.tar.gz
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas         0 Nov 27 04:55 boinc_lockfile
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 04:55 pandaJob.out
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas        57 Nov 27 04:55 setup.sh.local
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas    991551 Nov 27 04:56 agis_schedconf.cvmfs.json
[2025-11-27 15:46:20] drwx------. 5 boincer umatlas      4096 Nov 27 04:57 pilot3
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas       533 Nov 27 15:12 boinc_task_state.xml
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas 930448271 Nov 27 15:44 HITS.47556161._000859.pool.root.1
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas      1059 Nov 27 15:45 memory_monitor_summary.json
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:45 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas   1841491 Nov 27 15:45 log.47556161._000859.job.log.tgz.1
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas      8604 Nov 27 15:45 heartbeat.json
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas      7175 Nov 27 15:45 init_data.xml
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas        95 Nov 27 15:46 pilot_heartbeat.json
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:46 boinc_mmap_file
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas      4825 Nov 27 15:46 pilotlog.txt
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:46 wrapper_checkpoint.txt
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas   4702183 Nov 27 15:46 log.47556161._000859.job.log.1
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas       353 Nov 27 15:46 output.list
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:46 runtime_log
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas   6563840 Nov 27 15:46 result.tar.gz
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas       660 Nov 27 15:46 ZwPODmZi0h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1LJKDmnx2Zdm.diag
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 15:46 runtime_log.err
[2025-11-27 15:46:20] -rw-r--r--. 1 boincer umatlas     21834 Nov 27 15:46 stderr.txt
[2025-11-27 15:46:20] HITS file was successfully produced:
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas 930448271 Nov 27 15:44 shared/HITS.pool.root.1
[2025-11-27 15:46:20]  *** Contents of shared directory: ***
[2025-11-27 15:46:20] total 1318032
[2025-11-27 15:46:20] -rw-r--r--. 2 boincer umatlas 412027301 Nov 27 04:55 ATLAS.root_0
[2025-11-27 15:46:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 04:55 start_atlas.sh
[2025-11-27 15:46:20] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 04:55 input.tar.gz
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas 930448271 Nov 27 15:44 HITS.pool.root.1
[2025-11-27 15:46:20] -rw-------. 1 boincer umatlas   6563840 Nov 27 15:46 result.tar.gz
15:46:22 (2084601): run_atlas exited; CPU time 136461.160022
15:46:22 (2084601): called boinc_finish(0)

</stderr_txt>
]]>

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