Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:04:51 (3574): wrapper (7.7.26015): starting
05:04:51 (3574): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 05:04:51] Arguments: --nthreads 12
[2025-11-27 05:04:51] Threads: 12
[2025-11-27 05:04:51] Checking for CVMFS
[2025-11-27 05:04:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:04:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:04:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:04:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:04:51] 2.11.2.0 6893 118892 94204 153358 2 82 13288057 20275201 1 130560 0 50908363 99.934 6072929 31331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 05:04:51] CVMFS is ok
[2025-11-27 05:04:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:04:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:04:51] Further information can be found at the LHC@home message board.
[2025-11-27 05:04:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:04:51] Checking for apptainer binary...
[2025-11-27 05:04:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:04:51] Running /usr/bin/apptainer --version
[2025-11-27 05:04:51] apptainer version 1.3.2-1.el7
[2025-11-27 05:04:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:04:53] c-205-3.aglt2.org
[2025-11-27 05:04:53] apptainer works
[2025-11-27 05:04:53] Set ATHENA_PROC_NUMBER=12
[2025-11-27 05:04:53] Set ATHENA_CORE_NUMBER=12
[2025-11-27 05:04:53] Starting ATLAS job with PandaID=6897880988
[2025-11-27 05:04:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:11:19]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:11:19] 2025-11-27 17:10:47,647 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-27 12:11:19] 2025-11-27 17:10:47,651 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-27 12:11:19] 2025-11-27 17:10:47,653 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897880988/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,654 | INFO     | extracted standard info from prmon json
[2025-11-27 12:11:19] 2025-11-27 17:10:47,654 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:11:19] 2025-11-27 17:10:47,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:11:19] 2025-11-27 17:10:47,660 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:11:19] 2025-11-27 17:10:47,661 | INFO     | sum of square deviations: 22646799297.7514
[2025-11-27 12:11:19] 2025-11-27 17:10:47,665 | INFO     | sum of deviations: 405688668439.507
[2025-11-27 12:11:19] 2025-11-27 17:10:47,665 | INFO     | mean x: 1764250657.7799044
[2025-11-27 12:11:19] 2025-11-27 17:10:47,665 | INFO     | mean y: 3428633.6794258375
[2025-11-27 12:11:19] 2025-11-27 17:10:47,665 | INFO     | intersect: -31600882895.64645
[2025-11-27 12:11:19] 2025-11-27 17:10:47,665 | INFO     | chi2: 4.90391686480171
[2025-11-27 12:11:19] 2025-11-27 17:10:47,666 | INFO     | sum of square deviations: 21843833879.85467
[2025-11-27 12:11:19] 2025-11-27 17:10:47,670 | INFO     | sum of deviations: 545546696018.7947
[2025-11-27 12:11:19] 2025-11-27 17:10:47,670 | INFO     | mean x: 1764250505.283293
[2025-11-27 12:11:19] 2025-11-27 17:10:47,670 | INFO     | mean y: 3455161.651331719
[2025-11-27 12:11:19] 2025-11-27 17:10:47,670 | INFO     | intersect: -44058454455.52586
[2025-11-27 12:11:19] 2025-11-27 17:10:47,670 | INFO     | chi2: 2.5420373017794597
[2025-11-27 12:11:19] 2025-11-27 17:10:47,671 | INFO     | current chi2=2.5420373017794597 (change=48.163124052425246 %)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,671 | INFO     | sum of square deviations: 21060078124.44867
[2025-11-27 12:11:19] 2025-11-27 17:10:47,675 | INFO     | sum of deviations: 567070490027.1987
[2025-11-27 12:11:19] 2025-11-27 17:10:47,675 | INFO     | mean x: 1764250352.7867646
[2025-11-27 12:11:19] 2025-11-27 17:10:47,675 | INFO     | mean y: 3459302.036764706
[2025-11-27 12:11:19] 2025-11-27 17:10:47,675 | INFO     | intersect: -47501317564.105064
[2025-11-27 12:11:19] 2025-11-27 17:10:47,675 | INFO     | chi2: 2.2705719648850455
[2025-11-27 12:11:19] 2025-11-27 17:10:47,675 | INFO     | current chi2=2.2705719648850455 (change=10.679046161296881 %)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,676 | INFO     | right removable region: 407
[2025-11-27 12:11:19] 2025-11-27 17:10:47,676 | INFO     | sum of square deviations: 21843762509.854668
[2025-11-27 12:11:19] 2025-11-27 17:10:47,680 | INFO     | sum of deviations: 279034693127.51544
[2025-11-27 12:11:19] 2025-11-27 17:10:47,680 | INFO     | mean x: 1764250810.283293
[2025-11-27 12:11:19] 2025-11-27 17:10:47,680 | INFO     | mean y: 3452597.9443099275
[2025-11-27 12:11:19] 2025-11-27 17:10:47,680 | INFO     | intersect: -22533286813.376293
[2025-11-27 12:11:19] 2025-11-27 17:10:47,680 | INFO     | chi2: 2.7944323131747635
[2025-11-27 12:11:19] 2025-11-27 17:10:47,681 | INFO     | current chi2=2.7944323131747635 (change=43.0163196029679 %)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,681 | INFO     | sum of square deviations: 21059960577.019634
[2025-11-27 12:11:19] 2025-11-27 17:10:47,685 | INFO     | sum of deviations: 248185954109.13702
[2025-11-27 12:11:19] 2025-11-27 17:10:47,685 | INFO     | mean x: 1764250962.7843137
[2025-11-27 12:11:19] 2025-11-27 17:10:47,685 | INFO     | mean y: 3458592.7401960786
[2025-11-27 12:11:19] 2025-11-27 17:10:47,685 | INFO     | intersect: -20787763066.25846
[2025-11-27 12:11:19] 2025-11-27 17:10:47,686 | INFO     | chi2: 2.7507497400488274
[2025-11-27 12:11:19] 2025-11-27 17:10:47,686 | INFO     | current chi2=2.7507497400488274 (change=1.5632002578837967 %)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,686 | INFO     | left removable region: 20
[2025-11-27 12:11:19] 2025-11-27 17:10:47,686 | INFO     | sum of square deviations: 17972637236.00512
[2025-11-27 12:11:19] 2025-11-27 17:10:47,690 | INFO     | sum of deviations: 353437497786.6304
[2025-11-27 12:11:19] 2025-11-27 17:10:47,690 | INFO     | mean x: 1764250932.2919896
[2025-11-27 12:11:19] 2025-11-27 17:10:47,690 | INFO     | mean y: 3501786.622739018
[2025-11-27 12:11:19] 2025-11-27 17:10:47,690 | INFO     | intersect: -34691041189.398026
[2025-11-27 12:11:19] 2025-11-27 17:10:47,690 | INFO     | chi2: 0.05225437125939896
[2025-11-27 12:11:19] 2025-11-27 17:10:47,691 | INFO     | current memory leak: 19.67 B/s (using 387 data points, chi2=0.05)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,691 | INFO     | could have reported an average CPU frequency of 2323 MHz (18 samples)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,691 | INFO     | ..............................
[2025-11-27 12:11:19] 2025-11-27 17:10:47,691 | INFO     | . Timing measurements:
[2025-11-27 12:11:19] 2025-11-27 17:10:47,691 | INFO     | . get job = 0 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,691 | INFO     | . initial setup = 2 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,691 | INFO     | . payload setup = 8 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,692 | INFO     | . stage-in = 0 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,692 | INFO     | . payload execution = 25497 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,692 | INFO     | . stage-out = 3 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,692 | INFO     | . log creation = 0 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,692 | INFO     | ..............................
[2025-11-27 12:11:19] 2025-11-27 17:10:47,773 | INFO     | 
[2025-11-27 12:11:19] 2025-11-27 17:10:47,774 | INFO     | job summary report
[2025-11-27 12:11:19] 2025-11-27 17:10:47,774 | INFO     | --------------------------------------------------
[2025-11-27 12:11:19] 2025-11-27 17:10:47,774 | INFO     | PanDA job id: 6897880988
[2025-11-27 12:11:19] 2025-11-27 17:10:47,774 | INFO     | task id: 47556161
[2025-11-27 12:11:19] 2025-11-27 17:10:47,774 | INFO     | errors: (none)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,774 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:11:19] 2025-11-27 17:10:47,775 | INFO     | pilot state: finished 
[2025-11-27 12:11:19] 2025-11-27 17:10:47,775 | INFO     | transexitcode: 0
[2025-11-27 12:11:19] 2025-11-27 17:10:47,775 | INFO     | exeerrorcode: 0
[2025-11-27 12:11:19] 2025-11-27 17:10:47,775 | INFO     | exeerrordiag: 
[2025-11-27 12:11:19] 2025-11-27 17:10:47,775 | INFO     | exitcode: 0
[2025-11-27 12:11:19] 2025-11-27 17:10:47,775 | INFO     | exitmsg: OK
[2025-11-27 12:11:19] 2025-11-27 17:10:47,775 | INFO     | cpuconsumptiontime: 292868 s
[2025-11-27 12:11:19] 2025-11-27 17:10:47,776 | INFO     | nevents: 1000
[2025-11-27 12:11:19] 2025-11-27 17:10:47,776 | INFO     | neventsw: 0
[2025-11-27 12:11:19] 2025-11-27 17:10:47,776 | INFO     | pid: 14877
[2025-11-27 12:11:19] 2025-11-27 17:10:47,776 | INFO     | pgrp: 14877
[2025-11-27 12:11:19] 2025-11-27 17:10:47,776 | INFO     | corecount: 12
[2025-11-27 12:11:19] 2025-11-27 17:10:47,776 | INFO     | event service: False
[2025-11-27 12:11:19] 2025-11-27 17:10:47,777 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 11: 2284582, 25510: 2321706, 25514: 2330700, 25515: 2330884, 25523: 2331130}
[2025-11-27 12:11:19] 2025-11-27 17:10:47,777 | INFO     | --------------------------------------------------
[2025-11-27 12:11:19] 2025-11-27 17:10:47,777 | INFO     | 
[2025-11-27 12:11:19] 2025-11-27 17:10:47,777 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 12:11:19] 2025-11-27 17:10:47,807 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,808 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,808 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,808 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,808 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,808 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,808 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,809 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,809 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,809 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,809 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,809 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,809 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,810 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,810 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,810 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,810 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,810 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,811 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,811 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:11:19] 2025-11-27 17:10:47,811 | INFO     | job 6897880988 has completed (purged errors)
[2025-11-27 12:11:19] 2025-11-27 17:10:47,811 | INFO     | overall cleanup function is called
[2025-11-27 12:11:19] 2025-11-27 17:10:48,828 | INFO     | --- collectZombieJob: --- 10, [14877]
[2025-11-27 12:11:19] 2025-11-27 17:10:48,828 | INFO     | zombie collector waiting for pid 14877
[2025-11-27 12:11:19] 2025-11-27 17:10:48,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:11:19] 2025-11-27 17:10:48,829 | INFO     | collected zombie processes
[2025-11-27 12:11:19] 2025-11-27 17:10:48,829 | INFO     | will attempt to kill all subprocesses of pid=14877
[2025-11-27 12:11:19] 2025-11-27 17:10:48,920 | INFO     | process IDs to be killed: [14877] (in reverse order)
[2025-11-27 12:11:19] 2025-11-27 17:10:48,976 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:11:19] 2025-11-27 17:10:48,976 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:11:19] 2025-11-27 17:10:48,980 | INFO     | did not find any defunct processes belonging to 14877
[2025-11-27 12:11:19] 2025-11-27 17:10:48,983 | INFO     | did not find any defunct processes belonging to 14877
[2025-11-27 12:11:19] 2025-11-27 17:10:48,985 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:11:19] 2025-11-27 17:10:48,985 | INFO     | ready for new job
[2025-11-27 12:11:19] 2025-11-27 17:10:48,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:11:19] 2025-11-27 17:10:48,988 | INFO     | ***************************************
[2025-11-27 12:11:19] 2025-11-27 17:10:48,988 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:11:19] 2025-11-27 17:10:48,988 | INFO     | ***************************************
[2025-11-27 12:11:19] 2025-11-27 17:10:48,988 | INFO     | 
[2025-11-27 12:11:19] 2025-11-27 17:10:48,989 | INFO     | architecture information:
[2025-11-27 12:11:19] 2025-11-27 17:10:48,990 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:11:19] 2025-11-27 17:10:49,005 | INFO     | cat /etc/os-release:
[2025-11-27 12:11:19] NAME="CentOS Linux"
[2025-11-27 12:11:19] VERSION="7 (Core)"
[2025-11-27 12:11:19] ID="centos"
[2025-11-27 12:11:19] ID_LIKE="rhel fedora"
[2025-11-27 12:11:19] VERSION_ID="7"
[2025-11-27 12:11:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:11:19] ANSI_COLOR="0;31"
[2025-11-27 12:11:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:11:19] HOME_URL="https://www.centos.org/"
[2025-11-27 12:11:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:11:19] 
[2025-11-27 12:11:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:11:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:11:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:11:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:11:19] 
[2025-11-27 12:11:19] 2025-11-27 17:10:49,006 | INFO     | ***************************************
[2025-11-27 12:11:19] 2025-11-27 17:10:49,509 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 12:11:19] 2025-11-27 17:10:49,529 | INFO     | sufficient remaining disk space (28374466560 B)
[2025-11-27 12:11:19] 2025-11-27 17:10:49,529 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:11:19] 2025-11-27 17:10:49,529 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:11:19] 2025-11-27 17:10:49,530 | INFO     | update_server=False
[2025-11-27 12:11:19] 2025-11-27 17:10:49,530 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:11:19] 2025-11-27 17:10:49,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:11:19] 2025-11-27 17:10:49,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:11:19] 2025-11-27 17:10:49,785 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 12:11:19] 2025-11-27 17:10:49,785 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 12:11:19] 2025-11-27 17:10:49,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:11:19] 2025-11-27 17:10:49,786 | INFO     | will abort loop
[2025-11-27 12:11:19] 2025-11-27 17:10:50,118 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:11:19] 2025-11-27 17:10:50,335 | INFO     | all job control threads have been joined
[2025-11-27 12:11:19] 2025-11-27 17:10:50,534 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:50,535 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:50,555 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:50,599 | INFO     | all data control threads have been joined
[2025-11-27 12:11:19] 2025-11-27 17:10:50,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:11:19] 2025-11-27 17:10:50,633 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:50,791 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:50,980 | INFO     | all payload control threads have been joined
[2025-11-27 12:11:19] 2025-11-27 17:10:51,079 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,114 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,327 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,340 | INFO     | [job] control thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,536 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,605 | INFO     | [data] control thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,630 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,915 | INFO     | [job] validate thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:51,985 | INFO     | [payload] control thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:10:54,616 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:11:00,104 | INFO     | job.realtimelogging is not enabled
[2025-11-27 12:11:19] 2025-11-27 17:11:01,109 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:11:19] 2025-11-27 17:11:02,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139621577418560)>', '<ExcThread(monitor, started 139620830394112)>']
[2025-11-27 12:11:19] 2025-11-27 17:11:07,446 | INFO     | all workflow threads have been joined
[2025-11-27 12:11:19] 2025-11-27 17:11:07,446 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:11:19] 2025-11-27 17:11:07,447 | INFO     | traces error code: 0
[2025-11-27 12:11:19] 2025-11-27 17:11:07,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:11:19] 2025-11-27 17:11:19,108 | INFO     | PID=7747 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 12:11:19] 2025-11-27 17:11:19,109 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:11:19] 2025-11-27 17:11:19,109 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:11:19] 2025-11-27 17:11:19,109 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:11:19] 2025-11-27 17:11:19,110 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:11:19] 2025-11-27 17:11:19,110 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 12:11:19] 2025-11-27 17:11:19,110 | INFO     | [monitor] control thread has ended
[2025-11-27 12:11:19] 2025-11-27 17:11:19,208 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:11:19] 2025-11-27 17:11:19,211 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:11:19] 2025-11-27 17:11:19,215 [wrapper] pilotpid: 7747
[2025-11-27 12:11:19] 2025-11-27 17:11:19,219 [wrapper] Pilot exit status: 0
[2025-11-27 12:11:19] 2025-11-27 17:11:19,233 [wrapper] pandaids: 6897880988
[2025-11-27 12:11:19] 2025-11-27 17:11:19,271 [wrapper] cleanup supervisor_pilot  8284 7748
[2025-11-27 12:11:19] 2025-11-27 17:11:19,275 [wrapper] Test setup, not cleaning
[2025-11-27 12:11:19] 2025-11-27 17:11:19,279 [wrapper] apfmon messages muted
[2025-11-27 12:11:19] 2025-11-27 17:11:19,283 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:11:19] 2025-11-27 17:11:19,287 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:11:19]  *** Error codes and diagnostics ***
[2025-11-27 12:11:19]     "exeErrorCode": 0,
[2025-11-27 12:11:19]     "exeErrorDiag": "",
[2025-11-27 12:11:19]     "pilotErrorCode": 0,
[2025-11-27 12:11:19]     "pilotErrorDiag": "",
[2025-11-27 12:11:19]  *** Listing of results directory ***
[2025-11-27 12:11:19] total 1310556
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-11-27 12:11:19] -rwx------ 1 boincer umatlas     36292 Nov 25 20:46 runpilot2-wrapper.sh
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 20:46 queuedata.json
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas       100 Nov 27 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:11:19] -rwxr-xr-x 1 boincer umatlas      7986 Nov 27 05:04 run_atlas
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas       105 Nov 27 05:04 job.xml
[2025-11-27 12:11:19] -rw-r--r-- 2 boincer umatlas 408446726 Nov 27 05:04 EVNT.47483658._002355.pool.root.1
[2025-11-27 12:11:19] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 05:04 start_atlas.sh
[2025-11-27 12:11:19] drwxrwx--x 2 boincer umatlas      4096 Nov 27 05:04 shared
[2025-11-27 12:11:19] -rw-r--r-- 2 boincer umatlas    590100 Nov 27 05:04 input.tar.gz
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas         0 Nov 27 05:04 boinc_lockfile
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas      2785 Nov 27 05:04 pandaJob.out
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas        57 Nov 27 05:04 setup.sh.local
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas    991551 Nov 27 05:05 agis_schedconf.cvmfs.json
[2025-11-27 12:11:19] drwx------ 5 boincer umatlas      4096 Nov 27 05:05 pilot3
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas       533 Nov 27 12:01 boinc_task_state.xml
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas 918072063 Nov 27 12:10 HITS.47556161._003372.pool.root.1
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas      1061 Nov 27 12:10 memory_monitor_summary.json
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas   1516240 Nov 27 12:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas   2184671 Nov 27 12:10 log.47556161._003372.job.log.tgz.1
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas      8658 Nov 27 12:10 heartbeat.json
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas      5955 Nov 27 12:10 init_data.xml
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas        29 Nov 27 12:10 wrapper_checkpoint.txt
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas      8192 Nov 27 12:10 boinc_mmap_file
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas        95 Nov 27 12:11 pilot_heartbeat.json
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas       814 Nov 27 12:11 pilotlog.txt
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas   3599493 Nov 27 12:11 log.47556161._003372.job.log.1
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas       353 Nov 27 12:11 output.list
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas       620 Nov 27 12:11 runtime_log
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas   5806080 Nov 27 12:11 result.tar.gz
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas      9340 Nov 27 12:11 runtime_log.err
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas       669 Nov 27 12:11 fH5NDm6mJi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5fMKDmQtbDxn.diag
[2025-11-27 12:11:19] -rw-r--r-- 1 boincer umatlas     21245 Nov 27 12:11 stderr.txt
[2025-11-27 12:11:19] HITS file was successfully produced:
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas 918072063 Nov 27 12:10 shared/HITS.pool.root.1
[2025-11-27 12:11:19]  *** Contents of shared directory: ***
[2025-11-27 12:11:19] total 1301708
[2025-11-27 12:11:19] -rw-r--r-- 2 boincer umatlas 408446726 Nov 27 05:04 ATLAS.root_0
[2025-11-27 12:11:19] -rw-r--r-- 2 boincer umatlas     15847 Nov 27 05:04 start_atlas.sh
[2025-11-27 12:11:19] -rw-r--r-- 2 boincer umatlas    590100 Nov 27 05:04 input.tar.gz
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas 918072063 Nov 27 12:10 HITS.pool.root.1
[2025-11-27 12:11:19] -rw------- 1 boincer umatlas   5806080 Nov 27 12:11 result.tar.gz
12:11:21 (3574): run_atlas exited; CPU time 286117.446808
12:11:21 (3574): called boinc_finish(0)

</stderr_txt>
]]>

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