Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 23:53:16 (21820): vboxwrapper version 26210
2025-11-27 23:53:16 (21820): BOINC client version: 8.0.4
2025-11-27 23:53:17 (21820): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-27 23:53:17 (21820): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 23:53:18 (21820): Create VM. (boinc_f9d02ffc3a077cba, slot#1)
2025-11-27 23:53:18 (21820): Setting Memory Size for VM. (4600MB)
2025-11-27 23:53:19 (21820): Setting CPU Count for VM. (6)
2025-11-27 23:53:19 (21820): Setting Chipset Options for VM.
2025-11-27 23:53:19 (21820): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 23:53:19 (21820): Setting Boot Options for VM.
2025-11-27 23:53:20 (21820): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 23:53:20 (21820): Enabling VM Network Access.
2025-11-27 23:53:20 (21820): Disabling USB Support for VM.
2025-11-27 23:53:21 (21820): Disabling COM Port Support for VM.
2025-11-27 23:53:21 (21820): Disabling LPT Port Support for VM.
2025-11-27 23:53:21 (21820): Disabling Audio Support for VM.
2025-11-27 23:53:21 (21820): Disabling Clipboard Support for VM.
2025-11-27 23:53:22 (21820): Disabling Drag and Drop Support for VM.
2025-11-27 23:53:22 (21820): Adding storage controller(s) to VM.
2025-11-27 23:53:22 (21820): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 23:53:24 (21820): Adding VirtualBox Guest Additions to VM.
2025-11-27 23:53:24 (21820): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 23:53:25 (21820): forwarding host port 56309 to guest port 80
2025-11-27 23:53:25 (21820): Enabling remote desktop for VM.
2025-11-27 23:53:25 (21820): Required extension pack not installed, remote desktop not enabled.
2025-11-27 23:53:25 (21820): Enabling shared directory for VM.
2025-11-27 23:53:26 (21820): Starting VM using VBoxManage interface. (boinc_f9d02ffc3a077cba, slot#1)
2025-11-27 23:53:30 (21820): Successfully started VM. (PID = '27168')
2025-11-27 23:53:30 (21820): Reporting VM Process ID to BOINC.
2025-11-27 23:53:30 (21820): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-27 23:53:30 (21820): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 23:53:30 (21820): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 23:53:30 (21820): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 23:53:30 (21820): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 23:53:30 (21820): Detected: Web Application Enabled (http://localhost:56309)
2025-11-27 23:53:30 (21820): Preference change detected
2025-11-27 23:53:30 (21820): Setting CPU throttle for VM. (80%)
2025-11-27 23:53:31 (21820): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 23:53:32 (21820): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 23:53:32 (21820): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 23:53:35 (21820): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 23:53:35 (21820): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 23:53:35 (21820): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 23:53:44 (21820): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 23:53:44 (21820): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-27 23:53:50 (21820): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000100 main     Log opened 2025-11-27T23:53:47.983484000Z
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000172 main     OS Product: Linux
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000193 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000212 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000231 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000232 main     Process ID: 1339
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000232 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 23:53:50 (21820): Guest Log: 00:00:00.000655 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 23:53:50 (21820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 23:53:50 (21820): Guest Log: [INFO] Mounting shared directory
2025-11-27 23:53:50 (21820): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 23:53:54 (21820): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 23:53:54 (21820): Guest Log: [INFO] Detected branch: prod
2025-11-27 23:53:54 (21820): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 23:53:54 (21820): Guest Log: Copying input files
2025-11-27 23:53:55 (21820): Guest Log: Copied input files into RunAtlas.
2025-11-27 23:53:55 (21820): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 23:53:55 (21820): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 23:53:55 (21820): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 23:53:55 (21820): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 23:54:00 (21820): Guest Log: 00:00:10.009227 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 006 165 000ns (GuestNow=1 764 305 639 991 364 000 ns GuestLast=1 764 287 627 985 199 000 ns fSetTimeLastLoop=true )
2025-11-27 23:54:04 (21820): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 23:54:04 (21820): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 23:54:04 (21820): Guest Log: 2.6.3.0 1618 0 30188 153397 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 23:54:07 (21820): Guest Log: copied the webapp to /var/www
2025-11-27 23:54:07 (21820): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-27 23:54:07 (21820): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-27 23:54:07 (21820): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 23:54:07 (21820): Guest Log:  *** Starting ATLAS job. (PandaID=6895372527 taskID=47556137) ***
2025-11-28 01:33:34 (21820): Status Report: Elapsed Time: '6000.000000'
2025-11-28 01:33:34 (21820): Status Report: CPU Time: '30510.328125'
2025-11-28 03:13:37 (21820): Status Report: Elapsed Time: '12000.000000'
2025-11-28 03:13:37 (21820): Status Report: CPU Time: '62916.906250'
2025-11-28 04:53:53 (21820): Status Report: Elapsed Time: '18000.396313'
2025-11-28 04:53:53 (21820): Status Report: CPU Time: '95401.531250'
2025-11-28 06:33:56 (21820): Status Report: Elapsed Time: '24000.396313'
2025-11-28 06:33:56 (21820): Status Report: CPU Time: '127816.015625'
2025-11-28 06:41:32 (21820): Guest Log:  *** Job finished ***
2025-11-28 06:41:32 (21820): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:09,801 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:09,801 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:23,821 | INFO     | [monitor] cgroup control has ended
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:24,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850641000256)>', '<ExcThread(monitor, started 139849797445376)>']
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:24,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:24,915 | INFO     | [monitor] control thread has ended
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,517 | INFO     | all workflow threads have been joined
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,517 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,517 | INFO     | traces error code: 0
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,586 [wrapper] ==== pilot stdout END ====
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,588 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,591 [wrapper] pilotpid: 6034
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,593 [wrapper] Pilot exit status: 0
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,603 [wrapper] pandaids: 6895372527
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,620 [wrapper] cleanup supervisor_pilot  1150 6035
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,622 [wrapper] Test setup, not cleaning
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,626 [wrapper] apfmon messages muted
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,629 [wrapper] ==== wrapper stdout END ====
2025-11-28 06:41:32 (21820): Guest Log: 2025-11-28 11:41:29,632 [wrapper] ==== wrapper stderr END ====
2025-11-28 06:41:32 (21820): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 06:41:32 (21820): Guest Log:     "exeErrorCode": 0,
2025-11-28 06:41:32 (21820): Guest Log:     "exeErrorDiag": "",
2025-11-28 06:41:32 (21820): Guest Log:     "pilotErrorCode": 0,
2025-11-28 06:41:32 (21820): Guest Log:     "pilotErrorDiag": "",
2025-11-28 06:41:32 (21820): Guest Log:  *** Listing of results directory ***
2025-11-28 06:41:32 (21820): Guest Log: total 913688
2025-11-28 06:41:32 (21820): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 23 21:23 pilot3.tar.gz
2025-11-28 06:41:32 (21820): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 23 21:48 runpilot2-wrapper.sh
2025-11-28 06:41:32 (21820): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 23 21:48 queuedata.json
2025-11-28 06:41:32 (21820): Guest Log: -rwxr-xr-x. 1 atlas atlas      8891 Nov 28 04:53 init_data.xml
2025-11-28 06:41:32 (21820): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 28 04:53 start_atlas.sh
2025-11-28 06:41:32 (21820): Guest Log: -rwxr-xr-x. 1 atlas atlas    590100 Nov 28 04:53 input.tar.gz
2025-11-28 06:41:32 (21820): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 28 04:53 EVNT.47483658._000905.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 06:41:32 (21820): Guest Log: -rw-r--r--. 1 atlas atlas      2785 Nov 28 04:54 pandaJob.out
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas    991858 Nov 28 04:54 agis_schedconf.cvmfs.json
2025-11-28 06:41:32 (21820): Guest Log: drwx------. 5 atlas atlas      4096 Nov 28 04:54 pilot3
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas 922391007 Nov 28 11:40 HITS.47556137._008915.pool.root.1
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 28 11:40 memory_monitor_summary.json
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 28 11:40 agis_ddmendpoints.agis.ALL.json
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas   1461681 Nov 28 11:40 log.47556137._008915.job.log.tgz.1
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas      8626 Nov 28 11:40 heartbeat.json
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas        95 Nov 28 11:41 pilot_heartbeat.json
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 28 11:41 pilotlog.txt
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas   3226253 Nov 28 11:41 log.47556137._008915.job.log.1
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas       353 Nov 28 11:41 output.list
2025-11-28 06:41:32 (21820): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 28 11:41 runtime_log
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas   4710400 Nov 28 11:41 result.tar.gz
2025-11-28 06:41:32 (21820): Guest Log: -rw-r--r--. 1 atlas atlas      8762 Nov 28 11:41 runtime_log.err
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas       665 Nov 28 11:41 q15LDmS7Wh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiCLKDmSGmkmm.diag
2025-11-28 06:41:32 (21820): Guest Log: Looking for outputfile HITS.47556137._008915.pool.root.1
2025-11-28 06:41:32 (21820): Guest Log: HITS file was successfully produced
2025-11-28 06:41:32 (21820): Guest Log: -rw-------. 1 atlas atlas 922391007 Nov 28 11:40 /home/atlas/RunAtlas/HITS.47556137._008915.pool.root.1
2025-11-28 06:41:36 (21820): Guest Log: Successfully finished the ATLAS job!
2025-11-28 06:41:36 (21820): Guest Log: Copying the results back to the shared directory!
2025-11-28 06:41:36 (21820): Guest Log:  *** Contents of shared directory: ***
2025-11-28 06:41:36 (21820): Guest Log: total 1305528
2025-11-28 06:41:36 (21820): Guest Log: -rwxrwxrwx. 1 root root 409131222 Nov 28 04:53 ATLAS.root_0
2025-11-28 06:41:36 (21820): Guest Log: -rwxrwxrwx. 1 root root 922391007 Nov 28  2025 HITS.pool.root.1
2025-11-28 06:41:36 (21820): Guest Log: -rwxrwxrwx. 1 root root      8891 Nov 28 04:53 init_data.xml
2025-11-28 06:41:36 (21820): Guest Log: -rwxrwxrwx. 1 root root    590100 Nov 27 09:39 input.tar.gz
2025-11-28 06:41:36 (21820): Guest Log: -rwxrwxrwx. 1 root root   4710400 Nov 28  2025 result.tar.gz
2025-11-28 06:41:36 (21820): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 27 09:39 start_atlas.sh
2025-11-28 06:41:36 (21820): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 06:41:36 (21820): VM Completion File Detected.
2025-11-28 06:41:36 (21820): Powering off VM.
2025-11-28 06:41:39 (21820): Successfully stopped VM.
2025-11-28 06:41:39 (21820): Deregistering VM. (boinc_f9d02ffc3a077cba, slot#1)
2025-11-28 06:41:39 (21820): Removing network bandwidth throttle group from VM.
2025-11-28 06:41:39 (21820): Removing VM from VirtualBox.
2025-11-28 06:41:45 (21820): called boinc_finish(0)

</stderr_txt>
]]>

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