Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:45:33 (866031): wrapper (7.7.26015): starting
05:45:33 (866031): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 05:45:33] Arguments: --nthreads 8
[2025-11-27 05:45:33] Threads: 8
[2025-11-27 05:45:33] Checking for CVMFS
[2025-11-27 05:45:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 05:45:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 05:45:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 05:45:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 05:45:34] 2.13.3.0 12500 31388 246872 153360 1 670 25862334 32503809 52591 16776704 0 213606518 99.529 248685962 37148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 05:45:34] CVMFS is ok
[2025-11-27 05:45:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 05:45:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 05:45:34] Further information can be found at the LHC@home message board.
[2025-11-27 05:45:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 05:45:34] Checking for apptainer binary...
[2025-11-27 05:45:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 05:45:34] Running /usr/bin/apptainer --version
[2025-11-27 05:45:34] apptainer version 1.4.4-1.el9
[2025-11-27 05:45:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 05:45:34] c7-7-36.aglt2.org
[2025-11-27 05:45:34] apptainer works
[2025-11-27 05:45:34] Set ATHENA_PROC_NUMBER=8
[2025-11-27 05:45:34] Set ATHENA_CORE_NUMBER=8
[2025-11-27 05:45:34] Starting ATLAS job with PandaID=6895346529
[2025-11-27 05:45:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:21:49]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:21:49] 2025-11-28 03:20:35,850 | INFO     | time since job start (59681s) is within the limit (172800.0s)
[2025-11-27 22:21:49] 2025-11-28 03:20:37,373 | INFO     | monitor loop #3278: job 0:6895346529 is in state 'finished'
[2025-11-27 22:21:49] 2025-11-28 03:20:37,374 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:21:49] 2025-11-28 03:20:37,857 | INFO     | time since job start (59683s) is within the limit (172800.0s)
[2025-11-27 22:21:49] 2025-11-28 03:20:39,864 | INFO     | time since job start (59685s) is within the limit (172800.0s)
[2025-11-27 22:21:49] 2025-11-28 03:20:39,888 | INFO     | monitor loop #3279: job 0:6895346529 is in state 'finished'
[2025-11-27 22:21:49] 2025-11-28 03:20:39,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:21:49] 2025-11-28 03:20:41,921 | INFO     | time since job start (59687s) is within the limit (172800.0s)
[2025-11-27 22:21:49] 2025-11-28 03:20:42,396 | INFO     | monitor loop #3280: job 0:6895346529 is in state 'finished'
[2025-11-27 22:21:49] 2025-11-28 03:20:42,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:21:49] 2025-11-28 03:20:43,928 | INFO     | time since job start (59689s) is within the limit (172800.0s)
[2025-11-27 22:21:49] 2025-11-28 03:20:44,900 | INFO     | monitor loop #3281: job 0:6895346529 is in state 'finished'
[2025-11-27 22:21:49] 2025-11-28 03:20:44,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 22:21:49] 2025-11-28 03:20:46,910 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 22:21:49] 2025-11-28 03:20:46,918 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3166.5509479166662
[2025-11-27 22:21:49] 2025-11-28 03:20:46,930 | INFO     | PID=870445 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:21:49] 2025-11-28 03:20:46,930 | INFO     | .. there are 75 such processes running
[2025-11-27 22:21:49] 2025-11-28 03:20:46,969 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895346529/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 22:21:49] 2025-11-28 03:20:46,970 | INFO     | extracted standard info from prmon json
[2025-11-27 22:21:49] 2025-11-28 03:20:46,970 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 22:21:49] 2025-11-28 03:20:46,970 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 22:21:49] 2025-11-28 03:20:47,019 | INFO     | fitting pss+swap vs Time
[2025-11-27 22:21:49] 2025-11-28 03:20:47,031 | INFO     | sum of square deviations: 290066983673.247
[2025-11-27 22:21:49] 2025-11-28 03:20:47,079 | INFO     | sum of deviations: -932217619134.0306
[2025-11-27 22:21:49] 2025-11-28 03:20:47,079 | INFO     | mean x: 1764270190.1308794
[2025-11-27 22:21:49] 2025-11-28 03:20:47,079 | INFO     | mean y: 4085823.7658486706
[2025-11-27 22:21:49] 2025-11-28 03:20:47,079 | INFO     | intersect: 5674099471.391619
[2025-11-27 22:21:49] 2025-11-28 03:20:47,080 | INFO     | chi2: 27.68164810033722
[2025-11-27 22:21:49] 2025-11-28 03:20:47,081 | INFO     | sum of square deviations: 285641033053.74713
[2025-11-27 22:21:49] 2025-11-28 03:20:47,118 | INFO     | sum of deviations: -421802890449.9733
[2025-11-27 22:21:49] 2025-11-28 03:20:47,118 | INFO     | mean x: 1764270037.6341212
[2025-11-27 22:21:49] 2025-11-28 03:20:47,118 | INFO     | mean y: 4103407.179856115
[2025-11-27 22:21:49] 2025-11-28 03:20:47,118 | INFO     | intersect: 2609381064.428524
[2025-11-27 22:21:49] 2025-11-28 03:20:47,119 | INFO     | chi2: 23.66714020939685
[2025-11-27 22:21:49] 2025-11-28 03:20:47,119 | INFO     | current chi2=23.66714020939685 (change=14.502416461581506 %)
[2025-11-27 22:21:49] 2025-11-28 03:20:47,119 | INFO     | right removable region: 972
[2025-11-27 22:21:49] 2025-11-28 03:20:47,120 | INFO     | sum of square deviations: 285640656683.7475
[2025-11-27 22:21:49] 2025-11-28 03:20:47,155 | INFO     | sum of deviations: -1396691040126.006
[2025-11-27 22:21:49] 2025-11-28 03:20:47,159 | INFO     | mean x: 1764270342.6341212
[2025-11-27 22:21:49] 2025-11-28 03:20:47,160 | INFO     | mean y: 4101814.705035971
[2025-11-27 22:21:49] 2025-11-28 03:20:47,160 | INFO     | intersect: 8630816962.770725
[2025-11-27 22:21:49] 2025-11-28 03:20:47,160 | INFO     | chi2: 24.66944263732693
[2025-11-27 22:21:49] 2025-11-28 03:20:47,161 | INFO     | current chi2=24.66944263732693 (change=10.881597266506667 %)
[2025-11-27 22:21:49] 2025-11-28 03:20:47,161 | INFO     | left removable region: 10
[2025-11-27 22:21:49] 2025-11-28 03:20:47,161 | INFO     | sum of square deviations: 276062400659.88806
[2025-11-27 22:21:49] 2025-11-28 03:20:47,194 | INFO     | sum of deviations: -1038050656910.5411
[2025-11-27 22:21:49] 2025-11-28 03:20:47,194 | INFO     | mean x: 1764270312.1372142
[2025-11-27 22:21:49] 2025-11-28 03:20:47,194 | INFO     | mean y: 4131762.7162162163
[2025-11-27 22:21:49] 2025-11-28 03:20:47,198 | INFO     | intersect: 6638146217.796277
[2025-11-27 22:21:49] 2025-11-28 03:20:47,199 | INFO     | chi2: 19.074778155413213
[2025-11-27 22:21:49] 2025-11-28 03:20:47,199 | INFO     | current memory leak: -3.76 B/s (using 962 data points, chi2=19.07)
[2025-11-27 22:21:49] 2025-11-28 03:20:47,200 | INFO     | could have reported an average CPU frequency of 3203 MHz (36 samples)
[2025-11-27 22:21:49] 2025-11-28 03:20:47,200 | INFO     | ..............................
[2025-11-27 22:21:49] 2025-11-28 03:20:47,200 | INFO     | . Timing measurements:
[2025-11-27 22:21:49] 2025-11-28 03:20:47,200 | INFO     | . get job = 0 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,200 | INFO     | . initial setup = 3 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,200 | INFO     | . payload setup = 10 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,200 | INFO     | . stage-in = 0 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,201 | INFO     | . payload execution = 59635 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,201 | INFO     | . stage-out = 6 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,201 | INFO     | . log creation = 1 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,201 | INFO     | ..............................
[2025-11-27 22:21:49] 2025-11-28 03:20:47,845 | INFO     | 
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | job summary report
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | --------------------------------------------------
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | PanDA job id: 6895346529
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | task id: 47556137
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | errors: (none)
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | pilot state: finished 
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | transexitcode: 0
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | exeerrorcode: 0
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | exeerrordiag: 
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | exitcode: 0
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | exitmsg: OK
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | cpuconsumptiontime: 197075 s
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | nevents: 1000
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | neventsw: 0
[2025-11-27 22:21:49] 2025-11-28 03:20:47,846 | INFO     | pid: 878916
[2025-11-27 22:21:49] 2025-11-28 03:20:47,847 | INFO     | pgrp: 878916
[2025-11-27 22:21:49] 2025-11-28 03:20:47,847 | INFO     | corecount: 8
[2025-11-27 22:21:49] 2025-11-28 03:20:47,847 | INFO     | event service: False
[2025-11-27 22:21:49] 2025-11-28 03:20:47,847 | INFO     | sizes: {0: 2284263, 8: 2284525, 11: 2284553, 59647: 2336903, 59654: 2345953, 59673: 2346143}
[2025-11-27 22:21:49] 2025-11-28 03:20:47,847 | INFO     | --------------------------------------------------
[2025-11-27 22:21:49] 2025-11-28 03:20:47,847 | INFO     | 
[2025-11-27 22:21:49] 2025-11-28 03:20:47,847 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 22:21:49] 2025-11-28 03:20:47,905 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,905 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,905 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,905 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,906 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 22:21:49] 2025-11-28 03:20:47,907 | INFO     | job 6895346529 has completed (purged errors)
[2025-11-27 22:21:49] 2025-11-28 03:20:47,907 | INFO     | overall cleanup function is called
[2025-11-27 22:21:49] 2025-11-28 03:20:48,924 | INFO     | --- collectZombieJob: --- 10, [878916]
[2025-11-27 22:21:49] 2025-11-28 03:20:48,924 | INFO     | zombie collector waiting for pid 878916
[2025-11-27 22:21:49] 2025-11-28 03:20:48,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 22:21:49] 2025-11-28 03:20:48,925 | INFO     | collected zombie processes
[2025-11-27 22:21:49] 2025-11-28 03:20:48,925 | INFO     | will attempt to kill all subprocesses of pid=878916
[2025-11-27 22:21:49] 2025-11-28 03:20:51,210 | INFO     | process IDs to be killed: [878916] (in reverse order)
[2025-11-27 22:21:49] 2025-11-28 03:20:51,572 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 22:21:49] 2025-11-28 03:20:51,572 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 22:21:49] 2025-11-28 03:20:51,675 | INFO     | did not find any defunct processes belonging to 878916
[2025-11-27 22:21:49] 2025-11-28 03:20:51,751 | INFO     | did not find any defunct processes belonging to 878916
[2025-11-27 22:21:49] 2025-11-28 03:20:51,774 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:21:49] 2025-11-28 03:20:51,775 | INFO     | ready for new job
[2025-11-27 22:21:49] 2025-11-28 03:20:51,775 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:21:49] 2025-11-28 03:20:51,779 | INFO     | ***************************************
[2025-11-27 22:21:49] 2025-11-28 03:20:51,784 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:21:49] 2025-11-28 03:20:51,784 | INFO     | ***************************************
[2025-11-27 22:21:49] 2025-11-28 03:20:51,785 | INFO     | 
[2025-11-27 22:21:49] 2025-11-28 03:20:51,812 | INFO     | architecture information:
[2025-11-27 22:21:49] 2025-11-28 03:20:51,822 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:21:49] 2025-11-28 03:20:51,906 | INFO     | cat /etc/os-release:
[2025-11-27 22:21:49] NAME="CentOS Linux"
[2025-11-27 22:21:49] VERSION="7 (Core)"
[2025-11-27 22:21:49] ID="centos"
[2025-11-27 22:21:49] ID_LIKE="rhel fedora"
[2025-11-27 22:21:49] VERSION_ID="7"
[2025-11-27 22:21:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:21:49] ANSI_COLOR="0;31"
[2025-11-27 22:21:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:21:49] HOME_URL="https://www.centos.org/"
[2025-11-27 22:21:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:21:49] 
[2025-11-27 22:21:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:21:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:21:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:21:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:21:49] 
[2025-11-27 22:21:49] 2025-11-28 03:20:51,906 | INFO     | ***************************************
[2025-11-27 22:21:49] 2025-11-28 03:20:52,409 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 22:21:49] 2025-11-28 03:20:52,473 | INFO     | sufficient remaining disk space (88458919936 B)
[2025-11-27 22:21:49] 2025-11-28 03:20:52,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:21:49] 2025-11-28 03:20:52,473 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:21:49] 2025-11-28 03:20:52,473 | INFO     | update_server=False
[2025-11-27 22:21:49] 2025-11-28 03:20:52,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:21:49] 2025-11-28 03:20:52,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:21:49] 2025-11-28 03:20:52,474 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:21:49] 2025-11-28 03:20:52,503 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 22:21:49] 2025-11-28 03:20:52,504 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 22:21:49] 2025-11-28 03:20:52,504 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:21:49] 2025-11-28 03:20:52,504 | INFO     | will abort loop
[2025-11-27 22:21:49] 2025-11-28 03:20:52,994 | INFO     | all job control threads have been joined
[2025-11-27 22:21:49] 2025-11-28 03:20:53,135 | INFO     | all data control threads have been joined
[2025-11-27 22:21:49] 2025-11-28 03:20:53,390 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:21:49] 2025-11-28 03:20:53,478 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:53,479 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:53,514 | INFO     | [job] validate thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:53,515 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:53,555 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:53,604 | INFO     | all payload control threads have been joined
[2025-11-27 22:21:49] 2025-11-28 03:20:53,969 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,005 | INFO     | [job] control thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,028 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,074 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,137 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,153 | INFO     | [data] control thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,333 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,459 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:54,611 | INFO     | [payload] control thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:55,398 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:20:56,503 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:21:49] 2025-11-28 03:21:20,518 | INFO     | PID=870445 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 22:21:49] 2025-11-28 03:21:20,518 | INFO     | .. there are 75 such processes running
[2025-11-27 22:21:49] 2025-11-28 03:21:20,518 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:21:49] 2025-11-28 03:21:20,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:21:49] 2025-11-28 03:21:20,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:21:49] 2025-11-28 03:21:41,229 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:21:49] 2025-11-28 03:21:42,635 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140617711798080)>', '<ExcThread(monitor, started 140616616896256)>']
[2025-11-27 22:21:49] 2025-11-28 03:21:42,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:21:49] 2025-11-28 03:21:42,685 | INFO     | [monitor] control thread has ended
[2025-11-27 22:21:49] 2025-11-28 03:21:47,661 | INFO     | all workflow threads have been joined
[2025-11-27 22:21:49] 2025-11-28 03:21:47,662 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:21:49] 2025-11-28 03:21:47,662 | INFO     | traces error code: 0
[2025-11-27 22:21:49] 2025-11-28 03:21:47,662 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:21:49] 2025-11-28 03:21:48,040 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:21:49] 2025-11-28 03:21:48,081 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:21:49] 2025-11-28 03:21:48,083 [wrapper] pilotpid: 870445
[2025-11-27 22:21:49] 2025-11-28 03:21:48,085 [wrapper] Pilot exit status: 0
[2025-11-27 22:21:49] 2025-11-28 03:21:48,249 [wrapper] pandaids: 6895346529
[2025-11-27 22:21:49] 2025-11-28 03:21:48,425 [wrapper] cleanup supervisor_pilot 2667140 870446
[2025-11-27 22:21:49] 2025-11-28 03:21:48,440 [wrapper] Test setup, not cleaning
[2025-11-27 22:21:49] 2025-11-28 03:21:48,459 [wrapper] apfmon messages muted
[2025-11-27 22:21:49] 2025-11-28 03:21:48,509 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:21:49] 2025-11-28 03:21:48,554 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:21:49]  *** Error codes and diagnostics ***
[2025-11-27 22:21:49]     "exeErrorCode": 0,
[2025-11-27 22:21:49]     "exeErrorDiag": "",
[2025-11-27 22:21:49]     "pilotErrorCode": 0,
[2025-11-27 22:21:49]     "pilotErrorDiag": "",
[2025-11-27 22:21:49]  *** Listing of results directory ***
[2025-11-27 22:21:49] total 1322880
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 12:43 pilot3.tar.gz
[2025-11-27 22:21:49] -rwx------. 1 boincer umatlas     36292 Nov 22 13:26 runpilot2-wrapper.sh
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 13:26 queuedata.json
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas       100 Nov 27 05:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:21:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 05:45 run_atlas
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas       105 Nov 27 05:45 job.xml
[2025-11-27 22:21:49] -rw-r--r--. 2 boincer umatlas 410225676 Nov 27 05:45 EVNT.47483658._000462.pool.root.1
[2025-11-27 22:21:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 05:45 shared
[2025-11-27 22:21:49] -rw-r--r--. 2 boincer umatlas    590094 Nov 27 05:45 input.tar.gz
[2025-11-27 22:21:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 05:45 start_atlas.sh
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas         0 Nov 27 05:45 boinc_lockfile
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas      2784 Nov 27 05:45 pandaJob.out
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas        57 Nov 27 05:45 setup.sh.local
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas    991564 Nov 27 05:45 agis_schedconf.cvmfs.json
[2025-11-27 22:21:49] drwx------. 5 boincer umatlas      4096 Nov 27 05:45 pilot3
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas       533 Nov 27 21:48 boinc_task_state.xml
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas 921737451 Nov 27 22:19 HITS.47556137._004572.pool.root.1
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 22:20 init_data.xml
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas      1075 Nov 27 22:20 memory_monitor_summary.json
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas   1516240 Nov 27 22:20 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas   2122833 Nov 27 22:20 log.47556137._004572.job.log.tgz.1
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas        95 Nov 27 22:20 pilot_heartbeat.json
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas      8630 Nov 27 22:20 heartbeat.json
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 22:21 boinc_mmap_file
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas      5009 Nov 27 22:21 pilotlog.txt
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas        29 Nov 27 22:21 wrapper_checkpoint.txt
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas   7248590 Nov 27 22:21 log.47556137._004572.job.log.1
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas       353 Nov 27 22:21 output.list
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas       620 Nov 27 22:21 runtime_log
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas   9390080 Nov 27 22:21 result.tar.gz
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas       664 Nov 27 22:21 x6hKDmmU7g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpDIKDmndH1Io.diag
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas      9338 Nov 27 22:21 runtime_log.err
[2025-11-27 22:21:49] -rw-r--r--. 1 boincer umatlas     21783 Nov 27 22:21 stderr.txt
[2025-11-27 22:21:49] HITS file was successfully produced:
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas 921737451 Nov 27 22:19 shared/HITS.pool.root.1
[2025-11-27 22:21:49]  *** Contents of shared directory: ***
[2025-11-27 22:21:49] total 1310524
[2025-11-27 22:21:49] -rw-r--r--. 2 boincer umatlas 410225676 Nov 27 05:45 ATLAS.root_0
[2025-11-27 22:21:49] -rw-r--r--. 2 boincer umatlas    590094 Nov 27 05:45 input.tar.gz
[2025-11-27 22:21:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 05:45 start_atlas.sh
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas 921737451 Nov 27 22:19 HITS.pool.root.1
[2025-11-27 22:21:49] -rw-------. 1 boincer umatlas   9390080 Nov 27 22:21 result.tar.gz
22:21:50 (866031): run_atlas exited; CPU time 199066.522266
22:21:50 (866031): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN