Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-27 15:40:38 (11244): vboxwrapper version 26210
2025-11-27 15:40:38 (11244): BOINC client version: 8.0.2
2025-11-27 15:40:39 (11244): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-27 15:40:39 (11244): Successfully copied 'init_data.xml' to the shared directory.
2025-11-27 15:40:39 (11244): Create VM. (boinc_8cfb53195440ba82, slot#3)
2025-11-27 15:40:40 (11244): Setting Memory Size for VM. (4700MB)
2025-11-27 15:40:40 (11244): Setting CPU Count for VM. (7)
2025-11-27 15:40:40 (11244): Setting Chipset Options for VM.
2025-11-27 15:40:41 (11244): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-27 15:40:41 (11244): Setting Boot Options for VM.
2025-11-27 15:40:41 (11244): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-27 15:40:42 (11244): Enabling VM Network Access.
2025-11-27 15:40:42 (11244): Disabling USB Support for VM.
2025-11-27 15:40:42 (11244): Disabling COM Port Support for VM.
2025-11-27 15:40:42 (11244): Disabling LPT Port Support for VM.
2025-11-27 15:40:43 (11244): Disabling Audio Support for VM.
2025-11-27 15:40:43 (11244): Disabling Clipboard Support for VM.
2025-11-27 15:40:43 (11244): Disabling Drag and Drop Support for VM.
2025-11-27 15:40:43 (11244): Adding storage controller(s) to VM.
2025-11-27 15:40:44 (11244): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-27 15:40:45 (11244): Adding VirtualBox Guest Additions to VM.
2025-11-27 15:40:45 (11244): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-27 15:40:45 (11244): forwarding host port 52637 to guest port 80
2025-11-27 15:40:46 (11244): Enabling remote desktop for VM.
2025-11-27 15:40:46 (11244): Required extension pack not installed, remote desktop not enabled.
2025-11-27 15:40:46 (11244): Enabling shared directory for VM.
2025-11-27 15:40:47 (11244): Starting VM using VBoxManage interface. (boinc_8cfb53195440ba82, slot#3)
2025-11-27 15:40:50 (11244): Successfully started VM. (PID = '10512')
2025-11-27 15:40:50 (11244): Reporting VM Process ID to BOINC.
2025-11-27 15:40:50 (11244): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-27 15:40:50 (11244): Guest Log: CPUID EDX: 0x178bfbff
2025-11-27 15:40:50 (11244): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-27 15:40:50 (11244): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-27 15:40:50 (11244): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-27 15:40:50 (11244): Detected: Web Application Enabled (http://localhost:52637)
2025-11-27 15:40:50 (11244): Preference change detected
2025-11-27 15:40:50 (11244): Setting CPU throttle for VM. (100%)
2025-11-27 15:40:51 (11244): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-27 15:40:52 (11244): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-27 15:40:52 (11244): Guest Log: BIOS: Booting from Hard Disk...
2025-11-27 15:40:55 (11244): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-27 15:40:55 (11244): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-27 15:40:55 (11244): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-27 15:41:35 (11244): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-27 15:41:35 (11244): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-27 15:41:40 (11244): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000114 main     Log opened 2025-11-27T15:41:42.261681000Z
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000196 main     OS Product: Linux
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000215 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000230 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000246 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000246 main     Process ID: 1356
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000246 main     Package type: LINUX_64BITS_GENERIC
2025-11-27 15:41:40 (11244): Guest Log: 00:00:00.000889 main     5.2.32 r132073 started. Verbose level = 0
2025-11-27 15:41:40 (11244): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-27 15:41:40 (11244): Guest Log: [INFO] Mounting shared directory
2025-11-27 15:41:40 (11244): Guest Log: [INFO] Checking for init_data.xml
2025-11-27 15:41:44 (11244): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-27 15:41:44 (11244): Guest Log: [INFO] Detected branch: prod
2025-11-27 15:41:44 (11244): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-27 15:41:44 (11244): Guest Log: Copying input files
2025-11-27 15:41:46 (11244): Guest Log: Copied input files into RunAtlas.
2025-11-27 15:41:46 (11244): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-27 15:41:46 (11244): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-27 15:41:46 (11244): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-27 15:41:46 (11244): Guest Log: Further information can be found at the LHC@home message board.
2025-11-27 15:41:49 (11244): Guest Log: 00:00:10.003816 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 630 412 779 000ns (GuestNow=1 764 254 471 850 781 000 ns GuestLast=1 764 258 102 263 560 000 ns fSetTimeLastLoop=true )
2025-11-27 15:41:55 (11244): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-27 15:41:57 (11244): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-27 15:41:57 (11244): Guest Log: 2.6.3.0 1633 0 32180 153368 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-27 15:41:58 (11244): Guest Log: copied the webapp to /var/www
2025-11-27 15:41:58 (11244): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-27 15:41:58 (11244): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-27 15:41:58 (11244): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-27 15:41:58 (11244): Guest Log:  *** Starting ATLAS job. (PandaID=6891572047 taskID=47493068) ***
2025-11-27 17:20:53 (11244): Status Report: Elapsed Time: '6000.000000'
2025-11-27 17:20:53 (11244): Status Report: CPU Time: '39396.953125'
2025-11-27 19:00:55 (11244): Status Report: Elapsed Time: '12000.000000'
2025-11-27 19:00:55 (11244): Status Report: CPU Time: '81351.796875'
2025-11-27 20:40:57 (11244): Status Report: Elapsed Time: '18000.000000'
2025-11-27 20:40:57 (11244): Status Report: CPU Time: '123291.765625'
2025-11-27 22:21:00 (11244): Status Report: Elapsed Time: '24000.000000'
2025-11-27 22:21:00 (11244): Status Report: CPU Time: '165240.203125'
2025-11-28 00:01:02 (11244): Status Report: Elapsed Time: '30000.000000'
2025-11-28 00:01:02 (11244): Status Report: CPU Time: '204736.765625'
2025-11-28 00:05:28 (11244): Guest Log:  *** Job finished ***
2025-11-28 00:05:28 (11244): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:33,884 | INFO     | all workflow threads have been joined
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:33,884 | INFO     | end of generic workflow (traces error code: 0)
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:33,884 | INFO     | traces error code: 0
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:33,884 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,524 | INFO     | PID=6052 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,525 | INFO     | found 0 job(s) in 20 queues
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,525 | INFO     | [monitor] control thread has ended
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,799 [wrapper] ==== pilot stdout END ====
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,803 [wrapper] ==== wrapper stdout RESUME ====
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,808 [wrapper] pilotpid: 6052
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,812 [wrapper] Pilot exit status: 0
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,828 [wrapper] pandaids: 6891572047
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,858 [wrapper] cleanup supervisor_pilot 10631 6053
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,863 [wrapper] Test setup, not cleaning
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,868 [wrapper] apfmon messages muted
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,873 [wrapper] ==== wrapper stdout END ====
2025-11-28 00:05:28 (11244): Guest Log: 2025-11-27 23:13:52,877 [wrapper] ==== wrapper stderr END ====
2025-11-28 00:05:28 (11244): Guest Log:  *** Error codes and diagnostics ***
2025-11-28 00:05:28 (11244): Guest Log:     "exeErrorCode": 0,
2025-11-28 00:05:28 (11244): Guest Log:     "exeErrorDiag": "",
2025-11-28 00:05:28 (11244): Guest Log:     "pilotErrorCode": 0,
2025-11-28 00:05:28 (11244): Guest Log:     "pilotErrorDiag": "",
2025-11-28 00:05:28 (11244): Guest Log:  *** Listing of results directory ***
2025-11-28 00:05:28 (11244): Guest Log: total 902424
2025-11-28 00:05:28 (11244): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:47 pilot3.tar.gz
2025-11-28 00:05:28 (11244): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 16:16 queuedata.json
2025-11-28 00:05:28 (11244): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 16:16 runpilot2-wrapper.sh
2025-11-28 00:05:28 (11244): Guest Log: -rwxr-xr-x. 1 atlas atlas      9126 Nov 27 14:41 init_data.xml
2025-11-28 00:05:28 (11244): Guest Log: -rwxr-xr-x. 1 atlas atlas    590098 Nov 27 14:41 input.tar.gz
2025-11-28 00:05:28 (11244): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 27 14:41 start_atlas.sh
2025-11-28 00:05:28 (11244): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 27 14:41 EVNT.47493065._000324.pool.root.1 -> /data/./ATLAS.root_0
2025-11-28 00:05:28 (11244): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 27 14:41 pandaJob.out
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas    991580 Nov 27 14:41 agis_schedconf.cvmfs.json
2025-11-28 00:05:28 (11244): Guest Log: drwx------. 5 atlas atlas      4096 Nov 27 14:41 pilot3
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas 908374851 Nov 27 23:12 HITS.47493068._003232.pool.root.1
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas      1037 Nov 27 23:13 memory_monitor_summary.json
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 23:13 agis_ddmendpoints.agis.ALL.json
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas   1680087 Nov 27 23:13 log.47493068._003232.job.log.tgz.1
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas      8653 Nov 27 23:13 heartbeat.json
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas        96 Nov 27 23:13 pilot_heartbeat.json
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 23:13 pilotlog.txt
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas   4248484 Nov 27 23:13 log.47493068._003232.job.log.1
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 23:13 output.list
2025-11-28 00:05:28 (11244): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 23:13 runtime_log
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas   5949440 Nov 27 23:13 result.tar.gz
2025-11-28 00:05:28 (11244): Guest Log: -rw-r--r--. 1 atlas atlas      8634 Nov 27 23:13 runtime_log.err
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas       659 Nov 27 23:13 FUtMDmhYdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnSFKDm6njZpn.diag
2025-11-28 00:05:28 (11244): Guest Log: Looking for outputfile HITS.47493068._003232.pool.root.1
2025-11-28 00:05:28 (11244): Guest Log: HITS file was successfully produced
2025-11-28 00:05:28 (11244): Guest Log: -rw-------. 1 atlas atlas 908374851 Nov 27 23:12 /home/atlas/RunAtlas/HITS.47493068._003232.pool.root.1
2025-11-28 00:05:32 (11244): Guest Log: Successfully finished the ATLAS job!
2025-11-28 00:05:32 (11244): Guest Log: Copying the results back to the shared directory!
2025-11-28 00:05:32 (11244): Guest Log:  *** Contents of shared directory: ***
2025-11-28 00:05:32 (11244): Guest Log: total 1293868
2025-11-28 00:05:32 (11244): Guest Log: -rwxrwxrwx. 1 root root 409965540 Nov 27 14:40 ATLAS.root_0
2025-11-28 00:05:32 (11244): Guest Log: -rwxrwxrwx. 1 root root 908374851 Nov 27 23:05 HITS.pool.root.1
2025-11-28 00:05:32 (11244): Guest Log: -rwxrwxrwx. 1 root root      9126 Nov 27 14:40 init_data.xml
2025-11-28 00:05:32 (11244): Guest Log: -rwxrwxrwx. 1 root root    590098 Nov 27 09:27 input.tar.gz
2025-11-28 00:05:32 (11244): Guest Log: -rwxrwxrwx. 1 root root   5949440 Nov 27 23:05 result.tar.gz
2025-11-28 00:05:32 (11244): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 27 09:27 start_atlas.sh
2025-11-28 00:05:32 (11244): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-28 00:05:33 (11244): VM Completion File Detected.
2025-11-28 00:05:33 (11244): Powering off VM.
2025-11-28 00:05:34 (11244): Successfully stopped VM.
2025-11-28 00:05:34 (11244): Deregistering VM. (boinc_8cfb53195440ba82, slot#3)
2025-11-28 00:05:34 (11244): Removing network bandwidth throttle group from VM.
2025-11-28 00:05:34 (11244): Removing VM from VirtualBox.
2025-11-28 00:05:39 (11244): called boinc_finish(0)

</stderr_txt>
]]>

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